RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 WASH3PC4AMC7 463 aa16.92■□□□□ 0.3
COL7A1-204ENST00000462475 ZNF217O75362 1048 aa16.92■□□□□ 0.3
COL7A1-204ENST00000462475 PSEN1P49768 467 aa16.92■□□□□ 0.3
COL7A1-204ENST00000462475 ADAM9Q13443 819 aa16.92■□□□□ 0.3
COL7A1-204ENST00000462475 DUOXA1Q1HG43 343 aa16.92■□□□□ 0.3
COL7A1-204ENST00000462475 KRT39Q6A163 491 aa16.92■□□□□ 0.3
COL7A1-204ENST00000462475 SDE2Q6IQ49 451 aa16.92■□□□□ 0.3
COL7A1-204ENST00000462475 KRBA2Q6ZNG9 492 aa16.92■□□□□ 0.3
COL7A1-204ENST00000462475 CCDC150Q8NCX0 1101 aa16.92■□□□□ 0.3
COL7A1-204ENST00000462475 EEF2KMTQ96G04 330 aa16.92■□□□□ 0.3
COL7A1-204ENST00000462475 MRGPRX1Q96LB2 322 aa16.92■□□□□ 0.3
COL7A1-204ENST00000462475 HSPA12BQ96MM6 686 aa16.92■□□□□ 0.3
COL7A1-204ENST00000462475 ARID3AQ99856 593 aa16.92■□□□□ 0.3
COL7A1-204ENST00000462475 GTPBP2Q9BX10 602 aaKnown RBP16.92■□□□□ 0.3
COL7A1-204ENST00000462475 CAPN10Q9HC96 672 aa16.92■□□□□ 0.3
COL7A1-204ENST00000462475 CLIC5Q9NZA1 410 aa16.92■□□□□ 0.3
COL7A1-204ENST00000462475 FBXO10Q9UK96 956 aa16.92■□□□□ 0.3
COL7A1-204ENST00000462475 SLC6A14Q9UN76 642 aa16.92■□□□□ 0.3
COL7A1-204ENST00000462475 ASCC3Q8N3C0 2202 aaKnown RBP16.92■□□□□ 0.3
COL7A1-204ENST00000462475 MYH10P35580 1976 aa16.91■□□□□ 0.3
COL7A1-204ENST00000462475 ZBTB24O43167 697 aaPredicted RBP16.91■□□□□ 0.3
COL7A1-204ENST00000462475 PENKP01210 267 aaPredicted RBP16.91■□□□□ 0.3
COL7A1-204ENST00000462475 HMBSP08397 361 aa16.91■□□□□ 0.3
COL7A1-204ENST00000462475 SERPINF2P08697 491 aa16.91■□□□□ 0.3
COL7A1-204ENST00000462475 RALAP11233 206 aa16.91■□□□□ 0.3
COL7A1-204ENST00000462475 RPL13P26373 211 aaKnown RBP16.91■□□□□ 0.3
COL7A1-204ENST00000462475 MXI1P50539 228 aa16.91■□□□□ 0.3
COL7A1-204ENST00000462475 EFEMP1Q12805 493 aa16.91■□□□□ 0.3
COL7A1-204ENST00000462475 FYB2Q5VWT5 728 aa16.91■□□□□ 0.3
COL7A1-204ENST00000462475 PIP4P1Q86T03 277 aa16.91■□□□□ 0.3
COL7A1-204ENST00000462475 TADA2BQ86TJ2 420 aa16.91■□□□□ 0.3
COL7A1-204ENST00000462475 SMYD4Q8IYR2 804 aaPredicted RBP16.91■□□□□ 0.3
COL7A1-204ENST00000462475 ZNF276Q8N554 614 aa16.91■□□□□ 0.3
COL7A1-204ENST00000462475 TRIML1Q8N9V2 468 aa16.91■□□□□ 0.3
COL7A1-204ENST00000462475 SLC4A11Q8NBS3 891 aa16.91■□□□□ 0.3
COL7A1-204ENST00000462475 OR2I1PQ8NGU4 316 aa16.91■□□□□ 0.3
COL7A1-204ENST00000462475 CEP76Q8TAP6 659 aa16.91■□□□□ 0.3
COL7A1-204ENST00000462475 HEXIM2Q96MH2 286 aaKnown RBP16.91■□□□□ 0.3
COL7A1-204ENST00000462475 TMEM121BQ9BXQ6 578 aaPredicted RBP16.91■□□□□ 0.3
COL7A1-204ENST00000462475 ADAM33Q9BZ11 813 aa16.91■□□□□ 0.3
COL7A1-204ENST00000462475 CISHQ9NSE2 258 aa16.91■□□□□ 0.3
COL7A1-204ENST00000462475 SPEGQ15772 3267 aa16.91■□□□□ 0.3
COL7A1-204ENST00000462475 AKAP13Q12802 2813 aa16.91■□□□□ 0.3
COL7A1-204ENST00000462475 CACNA1EQ15878 2313 aa16.9■□□□□ 0.3
COL7A1-204ENST00000462475 CORO1AP31146 461 aaKnown RBP16.9■□□□□ 0.3
COL7A1-204ENST00000462475 GTF2H1P32780 548 aa16.9■□□□□ 0.3
COL7A1-204ENST00000462475 ATXN3P54252 364 aaPredicted RBP16.9■□□□□ 0.3
COL7A1-204ENST00000462475 RAD23BP54727 409 aa16.9■□□□□ 0.3
COL7A1-204ENST00000462475 MFAP3P55082 362 aa16.9■□□□□ 0.3
COL7A1-204ENST00000462475 MCCD1P59942 119 aaPredicted RBP16.9■□□□□ 0.3
COL7A1-204ENST00000462475 GFPT1Q06210 699 aaPredicted RBP16.9■□□□□ 0.3
COL7A1-204ENST00000462475 SEMA3BQ13214 749 aa16.9■□□□□ 0.3
COL7A1-204ENST00000462475 GEN1Q17RS7 908 aa16.9■□□□□ 0.3
COL7A1-204ENST00000462475 KIAA1324Q6UXG2 1013 aaKnown RBP16.9■□□□□ 0.3
COL7A1-204ENST00000462475 PIGZQ86VD9 579 aa16.9■□□□□ 0.3
COL7A1-204ENST00000462475 CDK5RAP1Q96SZ6 601 aaKnown RBP16.9■□□□□ 0.3
COL7A1-204ENST00000462475 SCNM1Q9BWG6 230 aa16.9■□□□□ 0.3
COL7A1-204ENST00000462475 SLC32A1Q9H598 525 aa16.9■□□□□ 0.3
COL7A1-204ENST00000462475 SLC27A6Q9Y2P4 619 aa16.9■□□□□ 0.3
COL7A1-204ENST00000462475 STON1Q9Y6Q2 735 aa16.9■□□□□ 0.3
COL7A1-204ENST00000462475 PCDH15Q96QU1 1955 aa16.89■□□□□ 0.3
COL7A1-204ENST00000462475 SPAARA0A1B0GVQ0 90 aa16.89■□□□□ 0.29
COL7A1-204ENST00000462475 A0A1W2PQ27 194 aa16.89■□□□□ 0.29
COL7A1-204ENST00000462475 A0A1W2PQ64 194 aa16.89■□□□□ 0.29
COL7A1-204ENST00000462475 A0A1W2PQD8 194 aa16.89■□□□□ 0.29
COL7A1-204ENST00000462475 GFRA2O00451 464 aa16.89■□□□□ 0.29
COL7A1-204ENST00000462475 IL12RB1P42701 662 aa16.89■□□□□ 0.29
COL7A1-204ENST00000462475 COG7P83436 770 aa16.89■□□□□ 0.29
COL7A1-204ENST00000462475 EDRF1Q3B7T1 1238 aa16.89■□□□□ 0.29
COL7A1-204ENST00000462475 FUT11Q495W5 492 aa16.89■□□□□ 0.29
COL7A1-204ENST00000462475 HDDC3Q8N4P3 179 aa16.89■□□□□ 0.29
COL7A1-204ENST00000462475 MINDY1Q8N5J2 469 aa16.89■□□□□ 0.29
COL7A1-204ENST00000462475 FBXL13Q8NEE6 735 aa16.89■□□□□ 0.29
COL7A1-204ENST00000462475 TMEM176AQ96HP8 235 aa16.89■□□□□ 0.29
COL7A1-204ENST00000462475 DNAI2Q9GZS0 605 aa16.89■□□□□ 0.29
COL7A1-204ENST00000462475 RAB20Q9NX57 234 aa16.89■□□□□ 0.29
COL7A1-204ENST00000462475 AGO1Q9UL18 857 aaKnown RBP16.89■□□□□ 0.29
COL7A1-204ENST00000462475 CLEC4EQ9ULY5 219 aa16.89■□□□□ 0.29
COL7A1-204ENST00000462475 ZNF510Q9Y2H8 683 aa16.89■□□□□ 0.29
COL7A1-204ENST00000462475 UPK3BL1B0FP48 263 aa16.88■□□□□ 0.29
COL7A1-204ENST00000462475 UPK3BL2E5RIL1 263 aa16.88■□□□□ 0.29
COL7A1-204ENST00000462475 ZNF202O95125 648 aa16.88■□□□□ 0.29
COL7A1-204ENST00000462475 STARD3Q14849 445 aa16.88■□□□□ 0.29
COL7A1-204ENST00000462475 RAB41Q5JT25 222 aa16.88■□□□□ 0.29
COL7A1-204ENST00000462475 ARHGAP17Q68EM7 881 aa16.88■□□□□ 0.29
COL7A1-204ENST00000462475 RABEPKQ7Z6M1 372 aa16.88■□□□□ 0.29
COL7A1-204ENST00000462475 DENND1CQ8IV53 801 aa16.88■□□□□ 0.29
COL7A1-204ENST00000462475 NDRG1Q92597 394 aaKnown RBP16.88■□□□□ 0.29
COL7A1-204ENST00000462475 GATA6Q92908 595 aa16.88■□□□□ 0.29
COL7A1-204ENST00000462475 TATDN2Q93075 761 aa16.88■□□□□ 0.29
COL7A1-204ENST00000462475 ZNF419Q96HQ0 510 aaPredicted RBP16.88■□□□□ 0.29
COL7A1-204ENST00000462475 FAXDC2Q96IV6 333 aa16.88■□□□□ 0.29
COL7A1-204ENST00000462475 DCLK3Q9C098 648 aa16.88■□□□□ 0.29
COL7A1-204ENST00000462475 MKRN2Q9H000 416 aaKnown RBP16.88■□□□□ 0.29
COL7A1-204ENST00000462475 GDPD2Q9HCC8 539 aa16.88■□□□□ 0.29
COL7A1-204ENST00000462475 MARCH2Q9P0N8 246 aa16.88■□□□□ 0.29
COL7A1-204ENST00000462475 THAP10Q9P2Z0 257 aaPredicted RBP16.88■□□□□ 0.29
COL7A1-204ENST00000462475 RALYQ9UKM9 306 aaKnown RBP16.88■□□□□ 0.29
COL7A1-204ENST00000462475 ZMIZ1Q9ULJ6 1067 aa16.88■□□□□ 0.29
COL7A1-204ENST00000462475 PI4KAP42356 2102 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms