RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 PHF7Q9BWX1 381 aaPredicted RBP12.09□□□□□ -0.47
SCN9A-204ENST00000452182 TRPV4Q9HBA0 871 aa12.09□□□□□ -0.47
SCN9A-204ENST00000452182 TRPC7Q9HCX4 862 aa12.09□□□□□ -0.47
SCN9A-204ENST00000452182 EPS15L1Q9UBC2 864 aa12.09□□□□□ -0.47
SCN9A-204ENST00000452182 MYO1AQ9UBC5 1043 aa12.09□□□□□ -0.47
SCN9A-204ENST00000452182 LCMT1Q9UIC8 334 aa12.09□□□□□ -0.47
SCN9A-204ENST00000452182 ARHGAP26Q9UNA1 814 aa12.09□□□□□ -0.47
SCN9A-204ENST00000452182 ENDOD1O94919 500 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 TBX18O95935 607 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 CKMP06732 381 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 CCDC175P0C221 793 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 LAMP2P13473 410 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 TCF3P15923 654 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 PDGFRAP16234 1089 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 GPD1P21695 349 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 SDC4P31431 198 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 KPNA1P52294 538 aaPredicted RBP12.08□□□□□ -0.48
SCN9A-204ENST00000452182 ZNF143P52747 638 aaPredicted RBP12.08□□□□□ -0.48
SCN9A-204ENST00000452182 HADHBP55084 474 aaKnown RBP12.08□□□□□ -0.48
SCN9A-204ENST00000452182 ZNF662Q6ZS27 426 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 EMC1Q8N766 993 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 KIAA1958Q8N8K9 716 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 ARL14EPQ8N8R7 260 aaPredicted RBP12.08□□□□□ -0.48
SCN9A-204ENST00000452182 ZSCAN18Q8TBC5 510 aaPredicted RBP12.08□□□□□ -0.48
SCN9A-204ENST00000452182 RXFP2Q8WXD0 754 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 CENPIQ92674 756 aaPredicted RBP12.08□□□□□ -0.48
SCN9A-204ENST00000452182 SMARCD2Q92925 531 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 ACSF2Q96CM8 615 aaPredicted RBP12.08□□□□□ -0.48
SCN9A-204ENST00000452182 CALR3Q96L12 384 aaKnown RBP12.08□□□□□ -0.48
SCN9A-204ENST00000452182 ZNF830Q96NB3 372 aaPredicted RBP12.08□□□□□ -0.48
SCN9A-204ENST00000452182 ASB16Q96NS5 453 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 SERPINB11Q96P15 392 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 MYADMQ96S97 322 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 CYP2S1Q96SQ9 504 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 DESI2Q9BSY9 194 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 NACA2Q9H009 215 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 SLITRK6Q9H5Y7 841 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 KIF9Q9HAQ2 790 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 PRDM6Q9NQX0 595 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 MARCH2Q9P0N8 246 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 CTTNBP2NLQ9P2B4 639 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 NUDT5Q9UKK9 219 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 RCCD1A6NED2 376 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 GJB6O95452 261 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 TRUB2O95900 331 aaKnown RBP12.08□□□□□ -0.48
SCN9A-204ENST00000452182 F9P00740 461 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 MBL2P11226 248 aaPredicted RBP12.08□□□□□ -0.48
SCN9A-204ENST00000452182 GBP1P32455 592 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 GBP2P32456 591 aaPredicted RBP12.08□□□□□ -0.48
SCN9A-204ENST00000452182 COG7P83436 770 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 TFF2Q03403 129 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 EFEMP1Q12805 493 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 KIF5AQ12840 1032 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 ACAP1Q15027 740 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 CCDC14Q49A88 953 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 STRADAQ7RTN6 431 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 KIAA1328Q86T90 577 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 ARID3BQ8IVW6 561 aaPredicted RBP12.08□□□□□ -0.48
SCN9A-204ENST00000452182 SLC35G2Q8TBE7 412 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 ZNF564Q8TBZ8 553 aaPredicted RBP12.08□□□□□ -0.48
SCN9A-204ENST00000452182 SLC39A7Q92504 469 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 E2F7Q96AV8 911 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 ZFRQ96KR1 1074 aaKnown RBP12.08□□□□□ -0.48
SCN9A-204ENST00000452182 CFAP57Q96MR6 1250 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 CNPY3Q9BT09 278 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 KLF16Q9BXK1 252 aaPredicted RBP12.08□□□□□ -0.48
SCN9A-204ENST00000452182 TDP1Q9NUW8 608 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 OBP2AQ9NY56 170 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 TLR6Q9Y2C9 796 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 HBS1LQ9Y450 684 aaKnown RBP12.08□□□□□ -0.48
SCN9A-204ENST00000452182 NR2E1Q9Y466 385 aa12.08□□□□□ -0.48
SCN9A-204ENST00000452182 MYO1FO00160 1098 aa12.07□□□□□ -0.48
SCN9A-204ENST00000452182 IRAK2O43187 625 aa12.07□□□□□ -0.48
SCN9A-204ENST00000452182 DESP17661 470 aa12.07□□□□□ -0.48
SCN9A-204ENST00000452182 ARHGAP25P42331 645 aa12.07□□□□□ -0.48
SCN9A-204ENST00000452182 OGDHQ02218 1023 aa12.07□□□□□ -0.48
SCN9A-204ENST00000452182 RING1Q06587 406 aa12.07□□□□□ -0.48
SCN9A-204ENST00000452182 PIGHQ14442 188 aaPredicted RBP12.07□□□□□ -0.48
SCN9A-204ENST00000452182 TRIP4Q15650 581 aaPredicted RBP12.07□□□□□ -0.48
SCN9A-204ENST00000452182 HS1BP3Q53T59 392 aa12.07□□□□□ -0.48
SCN9A-204ENST00000452182 FAM78AQ5JUQ0 283 aa12.07□□□□□ -0.48
SCN9A-204ENST00000452182 OTUD1Q5VV17 481 aaPredicted RBP12.07□□□□□ -0.48
SCN9A-204ENST00000452182 TAC4Q86UU9 113 aa12.07□□□□□ -0.48
SCN9A-204ENST00000452182 DDX42Q86XP3 938 aaKnown RBP eCLIP12.07□□□□□ -0.48
SCN9A-204ENST00000452182 CELF5Q8N6W0 485 aaKnown RBP12.07□□□□□ -0.48
SCN9A-204ENST00000452182 NIPA2Q8N8Q9 360 aa12.07□□□□□ -0.48
SCN9A-204ENST00000452182 ATXN2LQ8WWM7 1075 aaKnown RBP12.07□□□□□ -0.48
SCN9A-204ENST00000452182 USP13Q92995 863 aaPredicted RBP12.07□□□□□ -0.48
SCN9A-204ENST00000452182 NCAPGQ9BPX3 1015 aa12.07□□□□□ -0.48
SCN9A-204ENST00000452182 TSGA10Q9BZW7 698 aa12.07□□□□□ -0.48
SCN9A-204ENST00000452182 LACRTQ9GZZ8 138 aa12.07□□□□□ -0.48
SCN9A-204ENST00000452182 OSGEPQ9NPF4 335 aa12.07□□□□□ -0.48
SCN9A-204ENST00000452182 SFMBT1Q9UHJ3 866 aa12.07□□□□□ -0.48
SCN9A-204ENST00000452182 RASAL2Q9UJF2 1139 aa12.07□□□□□ -0.48
SCN9A-204ENST00000452182 ANAPC7Q9UJX3 599 aa12.07□□□□□ -0.48
SCN9A-204ENST00000452182 PPP2R2CQ9Y2T4 447 aa12.07□□□□□ -0.48
SCN9A-204ENST00000452182 CPQQ9Y646 472 aa12.07□□□□□ -0.48
SCN9A-204ENST00000452182 M0QYT0 321 aa12.06□□□□□ -0.48
SCN9A-204ENST00000452182 MDM4O15151 490 aa12.06□□□□□ -0.48
SCN9A-204ENST00000452182 PRAMEF12O95522 483 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms