RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 NMUR2Q9GZQ4 415 aa11.7□□□□□ -0.54
USP4-205ENST00000431357 ASCC2Q9H1I8 757 aaPredicted RBP11.7□□□□□ -0.54
USP4-205ENST00000431357 NGRNQ9NPE2 291 aaKnown RBP11.7□□□□□ -0.54
USP4-205ENST00000431357 DPP3Q9NY33 737 aa11.7□□□□□ -0.54
USP4-205ENST00000431357 ERAP1Q9NZ08 941 aa11.7□□□□□ -0.54
USP4-205ENST00000431357 PCDHA11Q9Y5I1 949 aa11.7□□□□□ -0.54
USP4-205ENST00000431357 CAPN14A8MX76 684 aa11.69□□□□□ -0.54
USP4-205ENST00000431357 SPECC1L-ADORA2AF8WAN1 911 aa11.69□□□□□ -0.54
USP4-205ENST00000431357 ECM2O94769 699 aaPredicted RBP11.69□□□□□ -0.54
USP4-205ENST00000431357 BPGMP07738 259 aa11.69□□□□□ -0.54
USP4-205ENST00000431357 IQCF3P0C7M6 154 aa11.69□□□□□ -0.54
USP4-205ENST00000431357 WASHC5Q12768 1159 aa11.69□□□□□ -0.54
USP4-205ENST00000431357 CHI3L2Q15782 390 aa11.69□□□□□ -0.54
USP4-205ENST00000431357 DNAL1Q4LDG9 190 aa11.69□□□□□ -0.54
USP4-205ENST00000431357 C1QTNF12Q5T7M4 302 aa11.69□□□□□ -0.54
USP4-205ENST00000431357 SNX30Q5VWJ9 437 aa11.69□□□□□ -0.54
USP4-205ENST00000431357 IRGCQ6NXR0 463 aa11.69□□□□□ -0.54
USP4-205ENST00000431357 KYAT3Q6YP21 454 aaKnown RBP11.69□□□□□ -0.54
USP4-205ENST00000431357 PDCD7Q8N8D1 485 aaKnown RBP11.69□□□□□ -0.54
USP4-205ENST00000431357 ACMSDQ8TDX5 336 aa11.69□□□□□ -0.54
USP4-205ENST00000431357 NRDE2Q9H7Z3 1164 aa11.69□□□□□ -0.54
USP4-205ENST00000431357 PLAC1Q9HBJ0 212 aa11.69□□□□□ -0.54
USP4-205ENST00000431357 GGA3Q9NZ52 723 aa11.69□□□□□ -0.54
USP4-205ENST00000431357 TAGLN3Q9UI15 199 aa11.69□□□□□ -0.54
USP4-205ENST00000431357 LRCH1Q9Y2L9 728 aa11.69□□□□□ -0.54
USP4-205ENST00000431357 B2RBV5 119 aa11.69□□□□□ -0.54
USP4-205ENST00000431357 SNNO75324 88 aaPredicted RBP11.69□□□□□ -0.54
USP4-205ENST00000431357 PTPN9P43378 593 aa11.69□□□□□ -0.54
USP4-205ENST00000431357 VGLL4Q14135 290 aa11.69□□□□□ -0.54
USP4-205ENST00000431357 PKDCCQ504Y2 493 aa11.69□□□□□ -0.54
USP4-205ENST00000431357 TEX44Q53QW1 395 aa11.69□□□□□ -0.54
USP4-205ENST00000431357 SYCP2LQ5T4T6 812 aa11.69□□□□□ -0.54
USP4-205ENST00000431357 LRRC74BQ6ZQY2 392 aa11.69□□□□□ -0.54
USP4-205ENST00000431357 NET1Q7Z628 596 aaPredicted RBP11.69□□□□□ -0.54
USP4-205ENST00000431357 ARID3BQ8IVW6 561 aaPredicted RBP11.69□□□□□ -0.54
USP4-205ENST00000431357 NDUFAF2Q8N183 169 aa11.69□□□□□ -0.54
USP4-205ENST00000431357 TRPM4Q8TD43 1214 aa11.69□□□□□ -0.54
USP4-205ENST00000431357 PRR11Q96HE9 360 aaPredicted RBP11.69□□□□□ -0.54
USP4-205ENST00000431357 ACAP3Q96P50 834 aa11.69□□□□□ -0.54
USP4-205ENST00000431357 SLC13A1Q9BZW2 595 aa11.69□□□□□ -0.54
USP4-205ENST00000431357 STN1Q9H668 368 aaKnown RBP11.69□□□□□ -0.54
USP4-205ENST00000431357 PRDM16Q9HAZ2 1276 aa11.69□□□□□ -0.54
USP4-205ENST00000431357 SMYD2Q9NRG4 433 aa11.69□□□□□ -0.54
USP4-205ENST00000431357 GPATCH2LQ9NWQ4 482 aa11.69□□□□□ -0.54
USP4-205ENST00000431357 NMRK1Q9NWW6 199 aa11.69□□□□□ -0.54
USP4-205ENST00000431357 PPARGC1AQ9UBK2 798 aaKnown RBP11.69□□□□□ -0.54
USP4-205ENST00000431357 HESX1Q9UBX0 185 aa11.69□□□□□ -0.54
USP4-205ENST00000431357 ANGPTL2Q9UKU9 493 aa11.69□□□□□ -0.54
USP4-205ENST00000431357 A6NJR5 290 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 CAPN9O14815 690 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 PEX10O60683 326 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 GRAP2O75791 330 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 CIB2O75838 187 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 KRT36O76013 467 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 CSH1P0DML2 217 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 CSH2P0DML3 217 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 TXNP10599 105 aaKnown RBP11.68□□□□□ -0.54
USP4-205ENST00000431357 MLNP12872 115 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 CYP2F1P24903 491 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 SCNN1AP37088 669 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 GCLCP48506 637 aaPredicted RBP11.68□□□□□ -0.54
USP4-205ENST00000431357 AP1B1Q10567 949 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 STX3Q13277 289 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 NAB1Q13506 487 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 SEMA5AQ13591 1074 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 TTLL4Q14679 1199 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 DPYSL2Q16555 572 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 RAB6CQ53S08 254 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 FAXCQ5TGI0 409 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 GADL1Q6ZQY3 521 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 TTC7BQ86TV6 843 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 ALYREFQ86V81 257 aaKnown RBP11.68□□□□□ -0.54
USP4-205ENST00000431357 CCNJLQ8IV13 435 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 STKLD1Q8NE28 680 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 DEPDC1BQ8WUY9 529 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 PIWIL1Q96J94 861 aaKnown RBP11.68□□□□□ -0.54
USP4-205ENST00000431357 FGD4Q96M96 766 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 QKIQ96PU8 341 aaKnown RBP eCLIP11.68□□□□□ -0.54
USP4-205ENST00000431357 RAB6CQ9H0N0 254 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 C1orf21Q9H246 121 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 VCXQ9H320 206 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 FAM96AQ9H5X1 160 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 ARHGEF4Q9NR80 690 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 THAP1Q9NVV9 213 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 MAD1L1Q9Y6D9 718 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 MGAMO43451 1857 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 DNAJC25-GNG10A0A024R161 153 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 A0A087WZ62 844 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 HACD1B0YJ81 288 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 PIK3R2O00459 728 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 CNMDO75829 334 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 SERPINA6P08185 405 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 CYP2C8P10632 490 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 CDC25CP30307 473 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 FDFT1P37268 417 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 RGS7P49802 495 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 KCTD2Q14681 263 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 CA9Q16790 459 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 TRMT5Q32P41 509 aaKnown RBP11.68□□□□□ -0.54
USP4-205ENST00000431357 STEAP4Q687X5 459 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms