RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 NSFP46459 744 aaKnown RBP13.03□□□□□ -0.32
SKA1-203ENST00000417656 GABRB2P47870 512 aa13.03□□□□□ -0.32
SKA1-203ENST00000417656 SNX16P57768 344 aa13.03□□□□□ -0.32
SKA1-203ENST00000417656 YWHAZP63104 245 aaKnown RBP13.03□□□□□ -0.32
SKA1-203ENST00000417656 PITX1P78337 314 aaPredicted RBP13.03□□□□□ -0.32
SKA1-203ENST00000417656 ZBED6P86452 979 aa13.03□□□□□ -0.32
SKA1-203ENST00000417656 SLC6A3Q01959 620 aa13.03□□□□□ -0.32
SKA1-203ENST00000417656 PRKCQQ04759 706 aa13.03□□□□□ -0.32
SKA1-203ENST00000417656 KLHL30Q0D2K2 578 aa13.03□□□□□ -0.32
SKA1-203ENST00000417656 TRIM14Q14142 442 aa13.03□□□□□ -0.32
SKA1-203ENST00000417656 TDRD12Q587J7 1177 aaKnown RBP13.03□□□□□ -0.32
SKA1-203ENST00000417656 FAM102AQ5T9C2 384 aaPredicted RBP13.03□□□□□ -0.32
SKA1-203ENST00000417656 SYPL2Q5VXT5 272 aa13.03□□□□□ -0.32
SKA1-203ENST00000417656 SLC26A9Q7LBE3 791 aa13.03□□□□□ -0.32
SKA1-203ENST00000417656 ZNF571Q7Z3V5 609 aaPredicted RBP13.03□□□□□ -0.32
SKA1-203ENST00000417656 DEFB106AQ8N104 65 aa13.03□□□□□ -0.32
SKA1-203ENST00000417656 KIAA1958Q8N8K9 716 aa13.03□□□□□ -0.32
SKA1-203ENST00000417656 FLCNQ8NFG4 579 aa13.03□□□□□ -0.32
SKA1-203ENST00000417656 ADAM32Q8TC27 787 aa13.03□□□□□ -0.32
SKA1-203ENST00000417656 PBXIP1Q96AQ6 731 aa13.03□□□□□ -0.32
SKA1-203ENST00000417656 C18orf8Q96DM3 657 aa13.03□□□□□ -0.32
SKA1-203ENST00000417656 SLC2A13Q96QE2 648 aa13.03□□□□□ -0.32
SKA1-203ENST00000417656 TRIM62Q9BVG3 475 aa13.03□□□□□ -0.32
SKA1-203ENST00000417656 TRIM5Q9C035 493 aa13.03□□□□□ -0.32
SKA1-203ENST00000417656 ECT2Q9H8V3 914 aa13.03□□□□□ -0.32
SKA1-203ENST00000417656 POPDC2Q9HBU9 364 aa13.03□□□□□ -0.32
SKA1-203ENST00000417656 ASNSD1Q9NWL6 643 aa13.03□□□□□ -0.32
SKA1-203ENST00000417656 LUC7L2Q9Y383 392 aaKnown RBP13.03□□□□□ -0.32
SKA1-203ENST00000417656 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.03□□□□□ -0.32
SKA1-203ENST00000417656 KLKB1P03952 638 aa13.02□□□□□ -0.33
SKA1-203ENST00000417656 GLI1P08151 1106 aa13.02□□□□□ -0.33
SKA1-203ENST00000417656 TNFAIP3P21580 790 aa13.02□□□□□ -0.33
SKA1-203ENST00000417656 VCPP55072 806 aaKnown RBP13.02□□□□□ -0.33
SKA1-203ENST00000417656 STARD6P59095 220 aa13.02□□□□□ -0.33
SKA1-203ENST00000417656 COG7P83436 770 aa13.02□□□□□ -0.33
SKA1-203ENST00000417656 PTP4A2Q12974 167 aa13.02□□□□□ -0.33
SKA1-203ENST00000417656 UBXN2BQ14CS0 331 aa13.02□□□□□ -0.33
SKA1-203ENST00000417656 EFHC1Q5JVL4 640 aa13.02□□□□□ -0.33
SKA1-203ENST00000417656 TXNDC11Q6PKC3 985 aa13.02□□□□□ -0.33
SKA1-203ENST00000417656 Q6ZNB5 142 aa13.02□□□□□ -0.33
SKA1-203ENST00000417656 HTR3DQ70Z44 454 aa13.02□□□□□ -0.33
SKA1-203ENST00000417656 BEND5Q7L4P6 421 aa13.02□□□□□ -0.33
SKA1-203ENST00000417656 TMC6Q7Z403 805 aa13.02□□□□□ -0.33
SKA1-203ENST00000417656 BMP8AQ7Z5Y6 402 aa13.02□□□□□ -0.33
SKA1-203ENST00000417656 PHLDB2Q86SQ0 1253 aa13.02□□□□□ -0.33
SKA1-203ENST00000417656 ZDHHC17Q8IUH5 632 aa13.02□□□□□ -0.33
SKA1-203ENST00000417656 FBXL6Q8N531 539 aa13.02□□□□□ -0.33
SKA1-203ENST00000417656 ZNF397Q8NF99 534 aaPredicted RBP13.02□□□□□ -0.33
SKA1-203ENST00000417656 PLD4Q96BZ4 506 aa13.02□□□□□ -0.33
SKA1-203ENST00000417656 CHFRQ96EP1 664 aa13.02□□□□□ -0.33
SKA1-203ENST00000417656 SHDQ96IW2 340 aa13.02□□□□□ -0.33
SKA1-203ENST00000417656 LRFN3Q9BTN0 628 aa13.02□□□□□ -0.33
SKA1-203ENST00000417656 DDX23Q9BUQ8 820 aaKnown RBP13.02□□□□□ -0.33
SKA1-203ENST00000417656 NUCKS1Q9H1E3 243 aaKnown RBP13.02□□□□□ -0.33
SKA1-203ENST00000417656 FAM204AQ9H8W3 233 aa13.02□□□□□ -0.33
SKA1-203ENST00000417656 LTB4R2Q9NPC1 389 aa13.02□□□□□ -0.33
SKA1-203ENST00000417656 METTL5Q9NRN9 209 aaKnown RBP13.02□□□□□ -0.33
SKA1-203ENST00000417656 TAS2R14Q9NYV8 317 aa13.02□□□□□ -0.33
SKA1-203ENST00000417656 TBC1D14Q9P2M4 693 aa13.02□□□□□ -0.33
SKA1-203ENST00000417656 HBS1LQ9Y450 684 aaKnown RBP13.02□□□□□ -0.33
SKA1-203ENST00000417656 STK25O00506 426 aa13.01□□□□□ -0.33
SKA1-203ENST00000417656 PLEKP08567 350 aaPredicted RBP13.01□□□□□ -0.33
SKA1-203ENST00000417656 TARSP26639 723 aaKnown RBP13.01□□□□□ -0.33
SKA1-203ENST00000417656 SCNN1AP37088 669 aa13.01□□□□□ -0.33
SKA1-203ENST00000417656 DHCR24Q15392 516 aa13.01□□□□□ -0.33
SKA1-203ENST00000417656 TRIP4Q15650 581 aaPredicted RBP13.01□□□□□ -0.33
SKA1-203ENST00000417656 DCAF6Q58WW2 860 aa13.01□□□□□ -0.33
SKA1-203ENST00000417656 HGSNATQ68CP4 663 aa13.01□□□□□ -0.33
SKA1-203ENST00000417656 NAIF1Q69YI7 327 aaPredicted RBP13.01□□□□□ -0.33
SKA1-203ENST00000417656 MON1BQ7L1V2 547 aa13.01□□□□□ -0.33
SKA1-203ENST00000417656 RALGPS2Q86X27 583 aaPredicted RBP13.01□□□□□ -0.33
SKA1-203ENST00000417656 PHF13Q86YI8 300 aaPredicted RBP13.01□□□□□ -0.33
SKA1-203ENST00000417656 DENND1CQ8IV53 801 aa13.01□□□□□ -0.33
SKA1-203ENST00000417656 SUGP1Q8IWZ8 645 aaKnown RBP13.01□□□□□ -0.33
SKA1-203ENST00000417656 FAM3CQ92520 227 aa13.01□□□□□ -0.33
SKA1-203ENST00000417656 SYN2Q92777 582 aaPredicted RBP13.01□□□□□ -0.33
SKA1-203ENST00000417656 OTUB2Q96DC9 234 aa13.01□□□□□ -0.33
SKA1-203ENST00000417656 MSANTD3Q96H12 275 aa13.01□□□□□ -0.33
SKA1-203ENST00000417656 SERPINB11Q96P15 392 aa13.01□□□□□ -0.33
SKA1-203ENST00000417656 C8orf33Q9H7E9 229 aaPredicted RBP13.01□□□□□ -0.33
SKA1-203ENST00000417656 ADAM22Q9P0K1 906 aa13.01□□□□□ -0.33
SKA1-203ENST00000417656 NDRG2Q9UN36 371 aaKnown RBP13.01□□□□□ -0.33
SKA1-203ENST00000417656 SYNJ2BP-COX16A0A087WUM0 186 aa13□□□□□ -0.33
SKA1-203ENST00000417656 KANSL1LA0AUZ9 987 aa13□□□□□ -0.33
SKA1-203ENST00000417656 TMCO5BA8MYB1 307 aa13□□□□□ -0.33
SKA1-203ENST00000417656 DDX3XO00571 662 aaKnown RBP eCLIP13□□□□□ -0.332e-9■■■■■ 31.8
SKA1-203ENST00000417656 IRAK2O43187 625 aa13□□□□□ -0.33
SKA1-203ENST00000417656 MFAP3LO75121 409 aa13□□□□□ -0.33
SKA1-203ENST00000417656 GJB6O95452 261 aa13□□□□□ -0.33
SKA1-203ENST00000417656 TRUB2O95900 331 aaKnown RBP13□□□□□ -0.33
SKA1-203ENST00000417656 ADH1CP00326 375 aa13□□□□□ -0.33
SKA1-203ENST00000417656 IGLV3-25P01717 112 aa13□□□□□ -0.33
SKA1-203ENST00000417656 IGLV3-27P01718 113 aa13□□□□□ -0.33
SKA1-203ENST00000417656 SERPING1P05155 500 aa13□□□□□ -0.33
SKA1-203ENST00000417656 CALB1P05937 261 aa13□□□□□ -0.33
SKA1-203ENST00000417656 ADH5P11766 374 aa13□□□□□ -0.33
SKA1-203ENST00000417656 GLULP15104 373 aa13□□□□□ -0.33
SKA1-203ENST00000417656 GJA4P35212 333 aa13□□□□□ -0.33
SKA1-203ENST00000417656 FLT3P36888 993 aa13□□□□□ -0.33
SKA1-203ENST00000417656 ZNF75DP51815 510 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms