RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 ZSCAN5CA6NGD5 496 aaPredicted RBP14.01□□□□□ -0.17
LIMS1-204ENST00000409441 TBX10O75333 385 aa14.01□□□□□ -0.17
LIMS1-204ENST00000409441 ZBED1O96006 694 aa14.01□□□□□ -0.17
LIMS1-204ENST00000409441 ERBB2P04626 1255 aa14.01□□□□□ -0.17
LIMS1-204ENST00000409441 POU2F2P09086 479 aa14.01□□□□□ -0.17
LIMS1-204ENST00000409441 GABRB2P47870 512 aa14.01□□□□□ -0.17
LIMS1-204ENST00000409441 TAF10Q12962 218 aa14.01□□□□□ -0.17
LIMS1-204ENST00000409441 PM20D1Q6GTS8 502 aa14.01□□□□□ -0.17
LIMS1-204ENST00000409441 GPR149Q86SP6 731 aa14.01□□□□□ -0.17
LIMS1-204ENST00000409441 IPO4Q8TEX9 1081 aaKnown RBP14.01□□□□□ -0.17
LIMS1-204ENST00000409441 NDRG1Q92597 394 aaKnown RBP14.01□□□□□ -0.17
LIMS1-204ENST00000409441 ALG3Q92685 438 aa14.01□□□□□ -0.17
LIMS1-204ENST00000409441 TRMT2BQ96GJ1 504 aaKnown RBP14.01□□□□□ -0.17
LIMS1-204ENST00000409441 HINFPQ9BQA5 517 aa14.01□□□□□ -0.17
LIMS1-204ENST00000409441 TTLL2Q9BWV7 592 aa14.01□□□□□ -0.17
LIMS1-204ENST00000409441 LRRC3Q9BY71 257 aa14.01□□□□□ -0.17
LIMS1-204ENST00000409441 ULBP1Q9BZM6 244 aa14.01□□□□□ -0.17
LIMS1-204ENST00000409441 S1PR5Q9H228 398 aa14.01□□□□□ -0.17
LIMS1-204ENST00000409441 ADAM7Q9H2U9 754 aa14.01□□□□□ -0.17
LIMS1-204ENST00000409441 CNGB3Q9NQW8 809 aa14.01□□□□□ -0.17
LIMS1-204ENST00000409441 SCML2Q9UQR0 700 aa14.01□□□□□ -0.17
LIMS1-204ENST00000409441 PTPRDP23468 1912 aa14.01□□□□□ -0.17
LIMS1-204ENST00000409441 ESYT3A0FGR9 886 aa14.01□□□□□ -0.17
LIMS1-204ENST00000409441 FAM92AA1XBS5 289 aa14.01□□□□□ -0.17
LIMS1-204ENST00000409441 TMEM110-MUSTN1A8MSY1 372 aa14.01□□□□□ -0.17
LIMS1-204ENST00000409441 PAPSS1O43252 624 aaPredicted RBP14.01□□□□□ -0.17
LIMS1-204ENST00000409441 ATMINO43313 823 aaPredicted RBP14.01□□□□□ -0.17
LIMS1-204ENST00000409441 SPOPO43791 374 aa14.01□□□□□ -0.17
LIMS1-204ENST00000409441 FBXO21O94952 628 aa14.01□□□□□ -0.17
LIMS1-204ENST00000409441 HSPA9P38646 679 aaKnown RBP14.01□□□□□ -0.17
LIMS1-204ENST00000409441 SLC1A1P43005 524 aa14.01□□□□□ -0.17
LIMS1-204ENST00000409441 PTP4A2Q12974 167 aa14.01□□□□□ -0.17
LIMS1-204ENST00000409441 CYP4A22Q5TCH4 519 aa14.01□□□□□ -0.17
LIMS1-204ENST00000409441 GRASPQ7Z6J2 395 aaPredicted RBP14.01□□□□□ -0.17
LIMS1-204ENST00000409441 TSEN2Q8NCE0 465 aaKnown RBP14.01□□□□□ -0.17
LIMS1-204ENST00000409441 FBXO32Q969P5 355 aa14.01□□□□□ -0.17
LIMS1-204ENST00000409441 MSLNLQ96KJ4 702 aa14.01□□□□□ -0.17
LIMS1-204ENST00000409441 PKNOX2Q96KN3 472 aa14.01□□□□□ -0.17
LIMS1-204ENST00000409441 C11orf70Q9BRQ4 267 aa14.01□□□□□ -0.17
LIMS1-204ENST00000409441 ASAH2Q9NR71 780 aa14.01□□□□□ -0.17
LIMS1-204ENST00000409441 UTP11Q9Y3A2 253 aaKnown RBP14.01□□□□□ -0.17
LIMS1-204ENST00000409441 MTCL1Q9Y4B5 1905 aaKnown RBP14.01□□□□□ -0.17
LIMS1-204ENST00000409441 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14□□□□□ -0.17
LIMS1-204ENST00000409441 PHF2O75151 1096 aa14□□□□□ -0.17
LIMS1-204ENST00000409441 CALB1P05937 261 aa14□□□□□ -0.17
LIMS1-204ENST00000409441 RHOP08100 348 aa14□□□□□ -0.17
LIMS1-204ENST00000409441 MYL4P12829 197 aa14□□□□□ -0.17
LIMS1-204ENST00000409441 CHRNA3P32297 505 aa14□□□□□ -0.17
LIMS1-204ENST00000409441 RWDD2BP57060 319 aa14□□□□□ -0.17
LIMS1-204ENST00000409441 NTHL1P78549 312 aa14□□□□□ -0.17
LIMS1-204ENST00000409441 MRPS5P82675 430 aaKnown RBP14□□□□□ -0.17
LIMS1-204ENST00000409441 ZNF268Q14587 947 aaPredicted RBP14□□□□□ -0.17
LIMS1-204ENST00000409441 ATAT1Q5SQI0 421 aa14□□□□□ -0.17
LIMS1-204ENST00000409441 CFAP58Q5T655 872 aa14□□□□□ -0.17
LIMS1-204ENST00000409441 OR6B2Q6IFH4 312 aa14□□□□□ -0.17
LIMS1-204ENST00000409441 CES5AQ6NT32 575 aa14□□□□□ -0.17
LIMS1-204ENST00000409441 MON1BQ7L1V2 547 aa14□□□□□ -0.17
LIMS1-204ENST00000409441 PHLDB2Q86SQ0 1253 aa14□□□□□ -0.17
LIMS1-204ENST00000409441 MON1AQ86VX9 555 aa14□□□□□ -0.17
LIMS1-204ENST00000409441 CLEC4CQ8WTT0 213 aa14□□□□□ -0.17
LIMS1-204ENST00000409441 KRT35Q92764 455 aa14□□□□□ -0.17
LIMS1-204ENST00000409441 LRRC45Q96CN5 670 aa14□□□□□ -0.17
LIMS1-204ENST00000409441 SLITRK1Q96PX8 696 aa14□□□□□ -0.17
LIMS1-204ENST00000409441 IL21Q9HBE4 155 aa14□□□□□ -0.17
LIMS1-204ENST00000409441 ZNF334Q9HCZ1 680 aaPredicted RBP14□□□□□ -0.17
LIMS1-204ENST00000409441 UXTQ9UBK9 157 aaPredicted RBP14□□□□□ -0.17
LIMS1-204ENST00000409441 AMACRQ9UHK6 382 aa14□□□□□ -0.17
LIMS1-204ENST00000409441 RASAL2Q9UJF2 1139 aa14□□□□□ -0.17
LIMS1-204ENST00000409441 TTI1O43156 1089 aa13.99□□□□□ -0.17
LIMS1-204ENST00000409441 F11P03951 625 aa13.99□□□□□ -0.17
LIMS1-204ENST00000409441 FAM153BP0C7A2 387 aa13.99□□□□□ -0.17
LIMS1-204ENST00000409441 GABRR2P28476 465 aa13.99□□□□□ -0.17
LIMS1-204ENST00000409441 ECHS1P30084 290 aa13.99□□□□□ -0.17
LIMS1-204ENST00000409441 GBP1P32455 592 aa13.99□□□□□ -0.17
LIMS1-204ENST00000409441 PGFP49763 221 aa13.99□□□□□ -0.17
LIMS1-204ENST00000409441 EPHA5P54756 1037 aa13.99□□□□□ -0.17
LIMS1-204ENST00000409441 DAOAP59103 153 aa13.99□□□□□ -0.17
LIMS1-204ENST00000409441 SLC6A3Q01959 620 aa13.99□□□□□ -0.17
LIMS1-204ENST00000409441 ZNF211Q13398 564 aaPredicted RBP13.99□□□□□ -0.17
LIMS1-204ENST00000409441 HLTFQ14527 1009 aaKnown RBP eCLIP13.99□□□□□ -0.17
LIMS1-204ENST00000409441 FAM153CQ494X1 144 aa13.99□□□□□ -0.17
LIMS1-204ENST00000409441 PABPC1LQ4VXU2 614 aaKnown RBP13.99□□□□□ -0.17
LIMS1-204ENST00000409441 FAM183BPQ6ZVS7 135 aa13.99□□□□□ -0.17
LIMS1-204ENST00000409441 XYLT1Q86Y38 959 aa13.99□□□□□ -0.17
LIMS1-204ENST00000409441 TMC8Q8IU68 726 aa13.99□□□□□ -0.17
LIMS1-204ENST00000409441 ZDHHC17Q8IUH5 632 aa13.99□□□□□ -0.17
LIMS1-204ENST00000409441 IQCKQ8N0W5 287 aa13.99□□□□□ -0.17
LIMS1-204ENST00000409441 SCML4Q8N228 414 aa13.99□□□□□ -0.17
LIMS1-204ENST00000409441 LEMD2Q8NC56 503 aa13.99□□□□□ -0.17
LIMS1-204ENST00000409441 IRGQQ8WZA9 623 aa13.99□□□□□ -0.17
LIMS1-204ENST00000409441 FAM204AQ9H8W3 233 aa13.99□□□□□ -0.17
LIMS1-204ENST00000409441 MRPL47Q9HD33 250 aaKnown RBP13.99□□□□□ -0.17
LIMS1-204ENST00000409441 GMIPQ9P107 970 aa13.99□□□□□ -0.17
LIMS1-204ENST00000409441 FAM153AQ9UHL3 310 aa13.99□□□□□ -0.17
LIMS1-204ENST00000409441 STRIP2Q9ULQ0 834 aa13.99□□□□□ -0.17
LIMS1-204ENST00000409441 ZNF840PA6NDX5 716 aa13.98□□□□□ -0.17
LIMS1-204ENST00000409441 YJEFN3A6XGL0 299 aa13.98□□□□□ -0.17
LIMS1-204ENST00000409441 E7ENQ6 273 aa13.98□□□□□ -0.17
LIMS1-204ENST00000409441 GOLGA8SH3BPF8 625 aa13.98□□□□□ -0.17
LIMS1-204ENST00000409441 H3BQ06 376 aaPredicted RBP13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms