RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 CLUL1Q15846 466 aa14.81□□□□□ -0.04
SKA1-202ENST00000398452 DUSP6Q16828 381 aa14.81□□□□□ -0.04
SKA1-202ENST00000398452 C15orf59Q2T9L4 293 aaPredicted RBP14.81□□□□□ -0.04
SKA1-202ENST00000398452 C10orf120Q5SQS8 335 aa14.81□□□□□ -0.04
SKA1-202ENST00000398452 LRRC38Q5VT99 294 aa14.81□□□□□ -0.04
SKA1-202ENST00000398452 ZNF687Q8N1G0 1237 aa14.81□□□□□ -0.04
SKA1-202ENST00000398452 LEMD2Q8NC56 503 aa14.81□□□□□ -0.04
SKA1-202ENST00000398452 MRPS31Q92665 395 aaKnown RBP14.81□□□□□ -0.04
SKA1-202ENST00000398452 PBKQ96KB5 322 aa14.81□□□□□ -0.04
SKA1-202ENST00000398452 MYRFLQ96LU7 910 aa14.81□□□□□ -0.04
SKA1-202ENST00000398452 TBCBQ99426 244 aa14.81□□□□□ -0.04
SKA1-202ENST00000398452 ZWILCHQ9H900 591 aa14.81□□□□□ -0.04
SKA1-202ENST00000398452 DZANK1Q9NVP4 752 aa14.81□□□□□ -0.04
SKA1-202ENST00000398452 DDIT4Q9NX09 232 aa14.81□□□□□ -0.04
SKA1-202ENST00000398452 ZDHHC7Q9NXF8 308 aa14.81□□□□□ -0.04
SKA1-202ENST00000398452 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.81□□□□□ -0.04
SKA1-202ENST00000398452 PCSK1NQ9UHG2 260 aa14.81□□□□□ -0.04
SKA1-202ENST00000398452 USP18Q9UMW8 372 aa14.81□□□□□ -0.04
SKA1-202ENST00000398452 PACSIN2Q9UNF0 486 aaPredicted RBP14.81□□□□□ -0.04
SKA1-202ENST00000398452 PTPRDP23468 1912 aa14.81□□□□□ -0.04
SKA1-202ENST00000398452 CCL16O15467 120 aa14.8□□□□□ -0.04
SKA1-202ENST00000398452 LRCH4O75427 683 aa14.8□□□□□ -0.04
SKA1-202ENST00000398452 TRUB2O95900 331 aaKnown RBP14.8□□□□□ -0.04
SKA1-202ENST00000398452 MYL4P12829 197 aa14.8□□□□□ -0.04
SKA1-202ENST00000398452 PTPN2P17706 415 aa14.8□□□□□ -0.04
SKA1-202ENST00000398452 CTNNA1P35221 906 aaKnown RBP14.8□□□□□ -0.04
SKA1-202ENST00000398452 ATP5C1P36542 298 aaKnown RBP14.8□□□□□ -0.04
SKA1-202ENST00000398452 PAFAH1B1P43034 410 aa14.8□□□□□ -0.04
SKA1-202ENST00000398452 KPNA1P52294 538 aaPredicted RBP14.8□□□□□ -0.04
SKA1-202ENST00000398452 ARHGAP15Q53QZ3 475 aa14.8□□□□□ -0.04
SKA1-202ENST00000398452 BOLA3Q53S33 107 aa14.8□□□□□ -0.04
SKA1-202ENST00000398452 ARSIQ5FYB1 569 aa14.8□□□□□ -0.04
SKA1-202ENST00000398452 HECTD3Q5T447 861 aa14.8□□□□□ -0.04
SKA1-202ENST00000398452 PDZD4Q76G19 769 aaPredicted RBP14.8□□□□□ -0.04
SKA1-202ENST00000398452 POLNQ7Z5Q5 900 aa14.8□□□□□ -0.04
SKA1-202ENST00000398452 CCDC50Q8IVM0 306 aa14.8□□□□□ -0.04
SKA1-202ENST00000398452 MAP7D3Q8IWC1 876 aa14.8□□□□□ -0.04
SKA1-202ENST00000398452 KHSRPQ92945 711 aaKnown RBP eCLIP14.8□□□□□ -0.047e-7■■■□□ 16.7
SKA1-202ENST00000398452 HES6Q96HZ4 224 aa14.8□□□□□ -0.04
SKA1-202ENST00000398452 RBM41Q96IZ5 413 aaKnown RBP14.8□□□□□ -0.04
SKA1-202ENST00000398452 NPY6RQ99463 290 aa14.8□□□□□ -0.04
SKA1-202ENST00000398452 CORO1BQ9BR76 489 aa14.8□□□□□ -0.04
SKA1-202ENST00000398452 IGFLR1Q9H665 355 aa14.8□□□□□ -0.04
SKA1-202ENST00000398452 LMCD1Q9NZU5 365 aa14.8□□□□□ -0.04
SKA1-202ENST00000398452 SLC12A6Q9UHW9 1150 aa14.8□□□□□ -0.04
SKA1-202ENST00000398452 SNX12Q9UMY4 172 aa14.8□□□□□ -0.04
SKA1-202ENST00000398452 PCDHA3Q9Y5H8 950 aa14.8□□□□□ -0.04
SKA1-202ENST00000398452 HCFC2Q9Y5Z7 792 aa14.8□□□□□ -0.04
SKA1-202ENST00000398452 MYO7AQ13402 2215 aa14.8□□□□□ -0.04
SKA1-202ENST00000398452 TLR5O60602 858 aa14.79□□□□□ -0.04
SKA1-202ENST00000398452 ZRANB2O95218 330 aaKnown RBP eCLIP14.79□□□□□ -0.04
SKA1-202ENST00000398452 KRT1P04264 644 aa14.79□□□□□ -0.04
SKA1-202ENST00000398452 SLC2A3P11169 496 aa14.79□□□□□ -0.04
SKA1-202ENST00000398452 PRLRP16471 622 aa14.79□□□□□ -0.04
SKA1-202ENST00000398452 HMGA1P17096 107 aaKnown RBP14.79□□□□□ -0.04
SKA1-202ENST00000398452 POU3F3P20264 500 aaPredicted RBP14.79□□□□□ -0.04
SKA1-202ENST00000398452 GABRR2P28476 465 aa14.79□□□□□ -0.04
SKA1-202ENST00000398452 MIPP30301 263 aa14.79□□□□□ -0.04
SKA1-202ENST00000398452 CKAP4Q07065 602 aaKnown RBP14.79□□□□□ -0.04
SKA1-202ENST00000398452 ZNF252P-AS1Q0IIN9 211 aa14.79□□□□□ -0.04
SKA1-202ENST00000398452 EFEMP1Q12805 493 aa14.79□□□□□ -0.04
SKA1-202ENST00000398452 KRT81Q14533 505 aa14.79□□□□□ -0.04
SKA1-202ENST00000398452 AAK1Q2M2I8 961 aa14.79□□□□□ -0.04
SKA1-202ENST00000398452 SYPL2Q5VXT5 272 aa14.79□□□□□ -0.04
SKA1-202ENST00000398452 PAPD7Q5XG87 772 aaKnown RBP14.79□□□□□ -0.04
SKA1-202ENST00000398452 ADGRD2Q7Z7M1 963 aa14.79□□□□□ -0.04
SKA1-202ENST00000398452 SCD5Q86SK9 330 aa14.79□□□□□ -0.04
SKA1-202ENST00000398452 DQX1Q8TE96 717 aaKnown RBP14.79□□□□□ -0.04
SKA1-202ENST00000398452 SLC22A17Q8WUG5 538 aa14.79□□□□□ -0.04
SKA1-202ENST00000398452 HLA-CQ95604 372 aa14.79□□□□□ -0.04
SKA1-202ENST00000398452 OSBPL9Q96SU4 736 aa14.79□□□□□ -0.04
SKA1-202ENST00000398452 PSMB7Q99436 277 aa14.79□□□□□ -0.04
SKA1-202ENST00000398452 NAP1L3Q99457 506 aaPredicted RBP14.79□□□□□ -0.04
SKA1-202ENST00000398452 TLR10Q9BXR5 811 aa14.79□□□□□ -0.04
SKA1-202ENST00000398452 ATXN3LQ9H3M9 355 aa14.79□□□□□ -0.04
SKA1-202ENST00000398452 SMOC2Q9H3U7 446 aa14.79□□□□□ -0.04
SKA1-202ENST00000398452 WDCPQ9H6R7 721 aa14.79□□□□□ -0.04
SKA1-202ENST00000398452 SFXN1Q9H9B4 322 aa14.79□□□□□ -0.04
SKA1-202ENST00000398452 NMUR1Q9HB89 426 aa14.79□□□□□ -0.04
SKA1-202ENST00000398452 TRPC7Q9HCX4 862 aa14.79□□□□□ -0.04
SKA1-202ENST00000398452 MTPAPQ9NVV4 582 aaKnown RBP eCLIP14.79□□□□□ -0.04
SKA1-202ENST00000398452 RASAL2Q9UJF2 1139 aa14.79□□□□□ -0.04
SKA1-202ENST00000398452 ZNF197O14709 1029 aa14.78□□□□□ -0.04
SKA1-202ENST00000398452 CEP104O60308 925 aa14.78□□□□□ -0.04
SKA1-202ENST00000398452 APOEP02649 317 aa14.78□□□□□ -0.04
SKA1-202ENST00000398452 BMP1P13497 986 aa14.78□□□□□ -0.04
SKA1-202ENST00000398452 TUBP50607 506 aa14.78□□□□□ -0.04
SKA1-202ENST00000398452 AIF1P55008 147 aa14.78□□□□□ -0.04
SKA1-202ENST00000398452 MTA1Q13330 715 aa14.78□□□□□ -0.04
SKA1-202ENST00000398452 EFHC2Q5JST6 749 aa14.78□□□□□ -0.04
SKA1-202ENST00000398452 BHLHA9Q7RTU4 235 aa14.78□□□□□ -0.04
SKA1-202ENST00000398452 RCOR2Q8IZ40 523 aa14.78□□□□□ -0.04
SKA1-202ENST00000398452 KCTD6Q8NC69 237 aa14.78□□□□□ -0.04
SKA1-202ENST00000398452 ADAM32Q8TC27 787 aa14.78□□□□□ -0.04
SKA1-202ENST00000398452 HSPH1Q92598 858 aa14.78□□□□□ -0.04
SKA1-202ENST00000398452 CENPIQ92674 756 aaPredicted RBP14.78□□□□□ -0.04
SKA1-202ENST00000398452 PGAP3Q96FM1 320 aaPredicted RBP14.78□□□□□ -0.04
SKA1-202ENST00000398452 CARD9Q9H257 536 aa14.78□□□□□ -0.04
SKA1-202ENST00000398452 MARCH2Q9P0N8 246 aa14.78□□□□□ -0.04
SKA1-202ENST00000398452 RNF14Q9UBS8 474 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms