RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 CYP1A1P04798 512 aaPredicted RBP22.67■■□□□ 1.22
CLN3-207ENST00000395653 TPM3P06753 285 aa22.67■■□□□ 1.22
CLN3-207ENST00000395653 HMBSP08397 361 aa22.67■■□□□ 1.22
CLN3-207ENST00000395653 TRIP4Q15650 581 aaPredicted RBP22.67■■□□□ 1.22
CLN3-207ENST00000395653 OR6B2Q6IFH4 312 aa22.67■■□□□ 1.22
CLN3-207ENST00000395653 OLFML1Q6UWY5 402 aa22.67■■□□□ 1.22
CLN3-207ENST00000395653 FAM183BPQ6ZVS7 135 aa22.67■■□□□ 1.22
CLN3-207ENST00000395653 ERICH1Q86X53 443 aa22.67■■□□□ 1.22
CLN3-207ENST00000395653 MSANTD4Q8NCY6 345 aa22.67■■□□□ 1.22
CLN3-207ENST00000395653 RNF214Q8ND24 703 aa22.67■■□□□ 1.22
CLN3-207ENST00000395653 DQX1Q8TE96 717 aaKnown RBP22.67■■□□□ 1.22
CLN3-207ENST00000395653 PRRX2Q99811 253 aa22.67■■□□□ 1.22
CLN3-207ENST00000395653 SPHK2Q9NRA0 654 aa22.67■■□□□ 1.22
CLN3-207ENST00000395653 NAALADL1Q9UQQ1 740 aa22.67■■□□□ 1.22
CLN3-207ENST00000395653 LRRC53A6NM62 1247 aa22.66■■□□□ 1.22
CLN3-207ENST00000395653 HSF2BPO75031 334 aa22.66■■□□□ 1.22
CLN3-207ENST00000395653 CHRNB1P11230 501 aa22.66■■□□□ 1.22
CLN3-207ENST00000395653 ADH5P11766 374 aa22.66■■□□□ 1.22
CLN3-207ENST00000395653 CORO1AP31146 461 aaKnown RBP22.66■■□□□ 1.22
CLN3-207ENST00000395653 SLC6A3Q01959 620 aa22.66■■□□□ 1.22
CLN3-207ENST00000395653 LRRC32Q14392 662 aa22.66■■□□□ 1.22
CLN3-207ENST00000395653 GAB4Q2WGN9 574 aa22.66■■□□□ 1.22
CLN3-207ENST00000395653 TMEM196Q5HYL7 178 aa22.66■■□□□ 1.22
CLN3-207ENST00000395653 LY6G5CQ5SRR4 150 aa22.66■■□□□ 1.22
CLN3-207ENST00000395653 NAA35Q5VZE5 725 aa22.66■■□□□ 1.22
CLN3-207ENST00000395653 SLC26A9Q7LBE3 791 aa22.66■■□□□ 1.22
CLN3-207ENST00000395653 IRF2BP2Q7Z5L9 587 aa22.66■■□□□ 1.22
CLN3-207ENST00000395653 ZNF397Q8NF99 534 aaPredicted RBP22.66■■□□□ 1.22
CLN3-207ENST00000395653 C18orf8Q96DM3 657 aa22.66■■□□□ 1.22
CLN3-207ENST00000395653 IQCDQ96DY2 449 aa22.66■■□□□ 1.22
CLN3-207ENST00000395653 SERPINB11Q96P15 392 aa22.66■■□□□ 1.22
CLN3-207ENST00000395653 MSI1O43347 362 aaKnown RBP22.65■■□□□ 1.22
CLN3-207ENST00000395653 COL9A1P20849 921 aa22.65■■□□□ 1.22
CLN3-207ENST00000395653 SCNN1AP37088 669 aa22.65■■□□□ 1.22
CLN3-207ENST00000395653 HARS2P49590 506 aaKnown RBP22.65■■□□□ 1.22
CLN3-207ENST00000395653 GAD2Q05329 585 aa22.65■■□□□ 1.22
CLN3-207ENST00000395653 RING1Q06587 406 aa22.65■■□□□ 1.22
CLN3-207ENST00000395653 NNTQ13423 1086 aa22.65■■□□□ 1.22
CLN3-207ENST00000395653 TAF5Q15542 800 aa22.65■■□□□ 1.22
CLN3-207ENST00000395653 SYPL2Q5VXT5 272 aa22.65■■□□□ 1.22
CLN3-207ENST00000395653 DTWD2Q8NBA8 298 aa22.65■■□□□ 1.22
CLN3-207ENST00000395653 CD101Q93033 1021 aa22.65■■□□□ 1.22
CLN3-207ENST00000395653 SLC2A13Q96QE2 648 aa22.65■■□□□ 1.22
CLN3-207ENST00000395653 P2RY13Q9BPV8 354 aa22.65■■□□□ 1.22
CLN3-207ENST00000395653 XPO4Q9C0E2 1151 aaKnown RBP22.65■■□□□ 1.22
CLN3-207ENST00000395653 AGO1Q9UL18 857 aaKnown RBP22.65■■□□□ 1.22
CLN3-207ENST00000395653 HOXC11O43248 304 aaPredicted RBP22.65■■□□□ 1.22
CLN3-207ENST00000395653 GALR2O43603 387 aaPredicted RBP22.65■■□□□ 1.22
CLN3-207ENST00000395653 IGLV3-27P01718 113 aa22.65■■□□□ 1.22
CLN3-207ENST00000395653 GALK1P51570 392 aa22.65■■□□□ 1.22
CLN3-207ENST00000395653 GRSF1Q12849 480 aaKnown RBP eCLIP22.65■■□□□ 1.22
CLN3-207ENST00000395653 CCINQ13939 588 aa22.65■■□□□ 1.22
CLN3-207ENST00000395653 DGKKQ5KSL6 1271 aa22.65■■□□□ 1.22
CLN3-207ENST00000395653 CPA5Q8WXQ8 436 aa22.65■■□□□ 1.22
CLN3-207ENST00000395653 AGPAT1Q99943 283 aa22.65■■□□□ 1.22
CLN3-207ENST00000395653 IER2Q9BTL4 223 aa22.65■■□□□ 1.22
CLN3-207ENST00000395653 LMAN1LQ9HAT1 526 aa22.65■■□□□ 1.22
CLN3-207ENST00000395653 AIPL1Q9NZN9 384 aa22.65■■□□□ 1.22
CLN3-207ENST00000395653 MARK1Q9P0L2 795 aa22.65■■□□□ 1.22
CLN3-207ENST00000395653 A0A1W2PQJ5 194 aa22.64■■□□□ 1.21
CLN3-207ENST00000395653 CBFA2T2O43439 604 aa22.64■■□□□ 1.21
CLN3-207ENST00000395653 LATS1O95835 1130 aa22.64■■□□□ 1.21
CLN3-207ENST00000395653 UNGP13051 313 aaPredicted RBP22.64■■□□□ 1.21
CLN3-207ENST00000395653 DRD1P21728 446 aa22.64■■□□□ 1.21
CLN3-207ENST00000395653 CHKAP35790 457 aa22.64■■□□□ 1.21
CLN3-207ENST00000395653 OPRD1P41143 372 aa22.64■■□□□ 1.21
CLN3-207ENST00000395653 EIF2DP41214 584 aaKnown RBP22.64■■□□□ 1.21
CLN3-207ENST00000395653 TBX4P57082 545 aa22.64■■□□□ 1.21
CLN3-207ENST00000395653 SFMBT2Q5VUG0 894 aa22.64■■□□□ 1.21
CLN3-207ENST00000395653 NUGGCQ68CJ6 796 aa22.64■■□□□ 1.21
CLN3-207ENST00000395653 FSTL4Q6MZW2 842 aa22.64■■□□□ 1.21
CLN3-207ENST00000395653 TAC4Q86UU9 113 aa22.64■■□□□ 1.21
CLN3-207ENST00000395653 XYLT1Q86Y38 959 aa22.64■■□□□ 1.21
CLN3-207ENST00000395653 TMEM25Q86YD3 366 aa22.64■■□□□ 1.21
CLN3-207ENST00000395653 DENND1CQ8IV53 801 aa22.64■■□□□ 1.21
CLN3-207ENST00000395653 DEFB106AQ8N104 65 aa22.64■■□□□ 1.21
CLN3-207ENST00000395653 SYNPOQ8N3V7 929 aa22.64■■□□□ 1.21
CLN3-207ENST00000395653 PCDHB18PQ96TA0 734 aa22.64■■□□□ 1.21
CLN3-207ENST00000395653 CHRDQ9H2X0 955 aa22.64■■□□□ 1.21
CLN3-207ENST00000395653 TLR6Q9Y2C9 796 aa22.64■■□□□ 1.21
CLN3-207ENST00000395653 ITIH6Q6UXX5 1313 aa22.64■■□□□ 1.21
CLN3-207ENST00000395653 DAB1O75553 588 aa22.63■■□□□ 1.21
CLN3-207ENST00000395653 IGLV3-25P01717 112 aa22.63■■□□□ 1.21
CLN3-207ENST00000395653 MMP8P22894 467 aa22.63■■□□□ 1.21
CLN3-207ENST00000395653 CENPCQ03188 943 aa22.63■■□□□ 1.21
CLN3-207ENST00000395653 ASIC2Q16515 512 aa22.63■■□□□ 1.21
CLN3-207ENST00000395653 DCAF6Q58WW2 860 aa22.63■■□□□ 1.21
CLN3-207ENST00000395653 NAIF1Q69YI7 327 aaPredicted RBP22.63■■□□□ 1.21
CLN3-207ENST00000395653 UNC45BQ8IWX7 931 aa22.63■■□□□ 1.21
CLN3-207ENST00000395653 FAM217AQ8IXS0 508 aa22.63■■□□□ 1.21
CLN3-207ENST00000395653 CPXM2Q8N436 756 aa22.63■■□□□ 1.21
CLN3-207ENST00000395653 SYT11Q9BT88 431 aa22.63■■□□□ 1.21
CLN3-207ENST00000395653 FBRSL1Q9HCM7 1045 aaKnown RBP22.63■■□□□ 1.21
CLN3-207ENST00000395653 STOML2Q9UJZ1 356 aa22.63■■□□□ 1.21
CLN3-207ENST00000395653 GRAP2O75791 330 aa22.62■■□□□ 1.21
CLN3-207ENST00000395653 TRUB2O95900 331 aaKnown RBP22.62■■□□□ 1.21
CLN3-207ENST00000395653 PRKCIP41743 596 aa22.62■■□□□ 1.21
CLN3-207ENST00000395653 CLEC16AQ2KHT3 1053 aa22.62■■□□□ 1.21
CLN3-207ENST00000395653 ANO4Q32M45 955 aa22.62■■□□□ 1.21
CLN3-207ENST00000395653 ETFBKMTQ8IXQ9 262 aa22.62■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms