RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 GBE1Q04446 702 aa16.66■□□□□ 0.26
PCDH1-203ENST00000394536 MOGSQ13724 837 aa16.66■□□□□ 0.26
PCDH1-203ENST00000394536 PDK2Q15119 407 aa16.66■□□□□ 0.26
PCDH1-203ENST00000394536 KIZQ2M2Z5 673 aa16.66■□□□□ 0.26
PCDH1-203ENST00000394536 LRRC23Q53EV4 343 aaPredicted RBP16.66■□□□□ 0.26
PCDH1-203ENST00000394536 PLEKHG4Q58EX7 1191 aa16.66■□□□□ 0.26
PCDH1-203ENST00000394536 ASRGL1Q7L266 308 aa16.66■□□□□ 0.26
PCDH1-203ENST00000394536 CCNJLQ8IV13 435 aa16.66■□□□□ 0.26
PCDH1-203ENST00000394536 NAT8LQ8N9F0 302 aa16.66■□□□□ 0.26
PCDH1-203ENST00000394536 ABTB1Q969K4 478 aaPredicted RBP16.66■□□□□ 0.26
PCDH1-203ENST00000394536 ANKRD27Q96NW4 1050 aa16.66■□□□□ 0.26
PCDH1-203ENST00000394536 CDT1Q9H211 546 aa16.66■□□□□ 0.26
PCDH1-203ENST00000394536 RNPEPQ9H4A4 650 aa16.66■□□□□ 0.26
PCDH1-203ENST00000394536 HMGXB4Q9UGU5 601 aa16.66■□□□□ 0.26
PCDH1-203ENST00000394536 CXorf49A8MYA2 514 aaPredicted RBP16.66■□□□□ 0.26
PCDH1-203ENST00000394536 WFS1O76024 890 aa16.66■□□□□ 0.26
PCDH1-203ENST00000394536 SOX11P35716 441 aa16.66■□□□□ 0.26
PCDH1-203ENST00000394536 ZNF143P52747 638 aaPredicted RBP16.66■□□□□ 0.26
PCDH1-203ENST00000394536 PEX6Q13608 980 aa16.66■□□□□ 0.26
PCDH1-203ENST00000394536 ULK2Q8IYT8 1036 aa16.66■□□□□ 0.26
PCDH1-203ENST00000394536 OLIG1Q8TAK6 271 aa16.66■□□□□ 0.26
PCDH1-203ENST00000394536 DCPSQ96C86 337 aaKnown RBP16.66■□□□□ 0.26
PCDH1-203ENST00000394536 NMD3Q96D46 503 aaKnown RBP16.66■□□□□ 0.26
PCDH1-203ENST00000394536 C20orf96Q9NUD7 363 aaPredicted RBP16.66■□□□□ 0.26
PCDH1-203ENST00000394536 HUS1O60921 280 aa16.65■□□□□ 0.26
PCDH1-203ENST00000394536 SMNDC1O75940 238 aaKnown RBP eCLIP16.65■□□□□ 0.26
PCDH1-203ENST00000394536 TPH1P17752 444 aa16.65■□□□□ 0.26
PCDH1-203ENST00000394536 TMEM63BQ5T3F8 832 aa16.65■□□□□ 0.26
PCDH1-203ENST00000394536 IYDQ6PHW0 289 aa16.65■□□□□ 0.26
PCDH1-203ENST00000394536 ACAD11Q709F0 780 aa16.65■□□□□ 0.26
PCDH1-203ENST00000394536 XYLT1Q86Y38 959 aa16.65■□□□□ 0.26
PCDH1-203ENST00000394536 CHST13Q8NET6 341 aa16.65■□□□□ 0.26
PCDH1-203ENST00000394536 BEST2Q8NFU1 509 aa16.65■□□□□ 0.26
PCDH1-203ENST00000394536 DENND1AQ8TEH3 1009 aa16.65■□□□□ 0.26
PCDH1-203ENST00000394536 LGMNQ99538 433 aa16.65■□□□□ 0.26
PCDH1-203ENST00000394536 TMEM134Q9H6X4 195 aa16.65■□□□□ 0.26
PCDH1-203ENST00000394536 BARX2Q9UMQ3 279 aaPredicted RBP16.65■□□□□ 0.26
PCDH1-203ENST00000394536 CRCPO75575 148 aa16.65■□□□□ 0.26
PCDH1-203ENST00000394536 ETS2P15036 469 aa16.65■□□□□ 0.26
PCDH1-203ENST00000394536 AVPR1AP37288 418 aa16.65■□□□□ 0.26
PCDH1-203ENST00000394536 KRT80Q6KB66 452 aa16.65■□□□□ 0.26
PCDH1-203ENST00000394536 TLDC1Q6P9B6 456 aa16.65■□□□□ 0.26
PCDH1-203ENST00000394536 TRIML2Q8N7C3 387 aa16.65■□□□□ 0.26
PCDH1-203ENST00000394536 SLC17A6Q9P2U8 582 aa16.65■□□□□ 0.26
PCDH1-203ENST00000394536 ARAP2Q8WZ64 1704 aa16.65■□□□□ 0.26
PCDH1-203ENST00000394536 INSRRP14616 1297 aa16.65■□□□□ 0.26
PCDH1-203ENST00000394536 CPA3P15088 417 aa16.65■□□□□ 0.26
PCDH1-203ENST00000394536 ANPEPP15144 967 aa16.65■□□□□ 0.26
PCDH1-203ENST00000394536 RXRBP28702 533 aa16.65■□□□□ 0.26
PCDH1-203ENST00000394536 PSEN1P49768 467 aa16.65■□□□□ 0.26
PCDH1-203ENST00000394536 USP10Q14694 798 aaKnown RBP16.65■□□□□ 0.26
PCDH1-203ENST00000394536 DRICH1Q6PGQ1 229 aaPredicted RBP16.65■□□□□ 0.26
PCDH1-203ENST00000394536 UNC5BQ8IZJ1 945 aa16.65■□□□□ 0.26
PCDH1-203ENST00000394536 PIWIL2Q8TC59 973 aaKnown RBP16.65■□□□□ 0.26
PCDH1-203ENST00000394536 EBF4Q9BQW3 602 aa16.65■□□□□ 0.26
PCDH1-203ENST00000394536 FRMD8Q9BZ67 464 aaPredicted RBP16.65■□□□□ 0.26
PCDH1-203ENST00000394536 EPS15L1Q9UBC2 864 aa16.65■□□□□ 0.26
PCDH1-203ENST00000394536 PLLPQ9Y342 182 aa16.65■□□□□ 0.26
PCDH1-203ENST00000394536 HES2Q9Y543 173 aa16.65■□□□□ 0.26
PCDH1-203ENST00000394536 BHMG1C9JSJ3 638 aaPredicted RBP16.64■□□□□ 0.25
PCDH1-203ENST00000394536 HBP1O60381 514 aa16.64■□□□□ 0.25
PCDH1-203ENST00000394536 GLRA3O75311 464 aa16.64■□□□□ 0.25
PCDH1-203ENST00000394536 SRGAP2BP0DMP2 458 aa16.64■□□□□ 0.25
PCDH1-203ENST00000394536 GRIA1P42261 906 aa16.64■□□□□ 0.25
PCDH1-203ENST00000394536 PDCD2Q16342 344 aaPredicted RBP16.64■□□□□ 0.25
PCDH1-203ENST00000394536 VWA5B1Q5TIE3 1220 aa16.64■□□□□ 0.25
PCDH1-203ENST00000394536 PDPK2PQ6A1A2 396 aa16.64■□□□□ 0.25
PCDH1-203ENST00000394536 LAYNQ6UX15 382 aa16.64■□□□□ 0.25
PCDH1-203ENST00000394536 UNC5AQ6ZN44 842 aa16.64■□□□□ 0.25
PCDH1-203ENST00000394536 PLD5Q8N7P1 536 aa16.64■□□□□ 0.25
PCDH1-203ENST00000394536 ADAM32Q8TC27 787 aa16.64■□□□□ 0.25
PCDH1-203ENST00000394536 DCAKDQ8WVC6 231 aa16.64■□□□□ 0.25
PCDH1-203ENST00000394536 USP13Q92995 863 aaPredicted RBP16.64■□□□□ 0.25
PCDH1-203ENST00000394536 TWNKQ96RR1 684 aa16.64■□□□□ 0.25
PCDH1-203ENST00000394536 ELOVL4Q9GZR5 314 aa16.64■□□□□ 0.25
PCDH1-203ENST00000394536 FNDC3AQ9Y2H6 1198 aaKnown RBP16.64■□□□□ 0.25
PCDH1-203ENST00000394536 TPP1O14773 563 aa16.64■□□□□ 0.25
PCDH1-203ENST00000394536 ARL2P36404 184 aa16.64■□□□□ 0.25
PCDH1-203ENST00000394536 RANBP1P43487 201 aa16.64■□□□□ 0.25
PCDH1-203ENST00000394536 YWHAZP63104 245 aaKnown RBP16.64■□□□□ 0.25
PCDH1-203ENST00000394536 PRPSAP1Q14558 356 aa16.64■□□□□ 0.25
PCDH1-203ENST00000394536 STRA8Q7Z7C7 330 aa16.64■□□□□ 0.25
PCDH1-203ENST00000394536 NUF2Q9BZD4 464 aa16.64■□□□□ 0.25
PCDH1-203ENST00000394536 PNPOQ9NVS9 261 aa16.64■□□□□ 0.25
PCDH1-203ENST00000394536 ZNF212Q9UDV6 495 aa16.64■□□□□ 0.25
PCDH1-203ENST00000394536 CHADO15335 359 aa16.64■□□□□ 0.25
PCDH1-203ENST00000394536 T-ENOLP0DO92 83 aa16.64■□□□□ 0.25
PCDH1-203ENST00000394536 HSP90AA5PQ58FG0 334 aa16.64■□□□□ 0.25
PCDH1-203ENST00000394536 SYT15Q9BQS2 421 aa16.64■□□□□ 0.25
PCDH1-203ENST00000394536 HAPLN2Q9GZV7 340 aa16.64■□□□□ 0.25
PCDH1-203ENST00000394536 BTBD7Q9P203 1132 aa16.64■□□□□ 0.25
PCDH1-203ENST00000394536 PDP2Q9P2J9 529 aa16.64■□□□□ 0.25
PCDH1-203ENST00000394536 ARHGAP26Q9UNA1 814 aa16.64■□□□□ 0.25
PCDH1-203ENST00000394536 M0QYT0 321 aa16.63■□□□□ 0.25
PCDH1-203ENST00000394536 F7P08709 466 aaPredicted RBP16.63■□□□□ 0.25
PCDH1-203ENST00000394536 SPRP35270 261 aaPredicted RBP16.63■□□□□ 0.25
PCDH1-203ENST00000394536 ZNF252P-AS1Q0IIN9 211 aa16.63■□□□□ 0.25
PCDH1-203ENST00000394536 TBL3Q12788 808 aaKnown RBP16.63■□□□□ 0.25
PCDH1-203ENST00000394536 USP4Q13107 963 aa16.63■□□□□ 0.25
PCDH1-203ENST00000394536 NOMO1Q15155 1222 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms