RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 ITGA7Q13683 1181 aa11.55□□□□□ -0.56
TCOF1-203ENST00000394269 HEATR6Q6AI08 1181 aaKnown RBP11.55□□□□□ -0.56
TCOF1-203ENST00000394269 VSTM1Q6UX27 236 aa11.55□□□□□ -0.56
TCOF1-203ENST00000394269 ARHGEF18Q6ZSZ5 1173 aa11.55□□□□□ -0.56
TCOF1-203ENST00000394269 SERINC5Q86VE9 423 aa11.55□□□□□ -0.56
TCOF1-203ENST00000394269 CEP57Q86XR8 500 aa11.55□□□□□ -0.56
TCOF1-203ENST00000394269 SCN4BQ8IWT1 228 aa11.55□□□□□ -0.56
TCOF1-203ENST00000394269 TOP6BLQ8N6T0 577 aa11.55□□□□□ -0.56
TCOF1-203ENST00000394269 NAT8LQ8N9F0 302 aa11.55□□□□□ -0.56
TCOF1-203ENST00000394269 SENP6Q9GZR1 1112 aaPredicted RBP11.55□□□□□ -0.56
TCOF1-203ENST00000394269 ANK1P16157 1881 aa11.55□□□□□ -0.56
TCOF1-203ENST00000394269 KCNK1O00180 336 aa11.55□□□□□ -0.56
TCOF1-203ENST00000394269 XPO1O14980 1071 aaKnown RBP11.55□□□□□ -0.56
TCOF1-203ENST00000394269 KRT4P19013 534 aa11.55□□□□□ -0.56
TCOF1-203ENST00000394269 GBP2P32456 591 aaPredicted RBP11.55□□□□□ -0.56
TCOF1-203ENST00000394269 SP3Q02447 781 aa11.55□□□□□ -0.56
TCOF1-203ENST00000394269 RNASELQ05823 741 aaKnown RBP11.55□□□□□ -0.56
TCOF1-203ENST00000394269 CCDC121Q6ZUS5 278 aa11.55□□□□□ -0.56
TCOF1-203ENST00000394269 RAET1EQ8TD07 263 aa11.55□□□□□ -0.56
TCOF1-203ENST00000394269 DEPDC1BQ8WUY9 529 aa11.55□□□□□ -0.56
TCOF1-203ENST00000394269 HSFY1Q96LI6 401 aa11.55□□□□□ -0.56
TCOF1-203ENST00000394269 SMC6Q96SB8 1091 aa11.55□□□□□ -0.56
TCOF1-203ENST00000394269 HNRNPABQ99729 332 aaKnown RBP11.55□□□□□ -0.56
TCOF1-203ENST00000394269 TLL2Q9Y6L7 1015 aa11.55□□□□□ -0.56
TCOF1-203ENST00000394269 MYO18AQ92614 2054 aaKnown RBP11.54□□□□□ -0.56
TCOF1-203ENST00000394269 KBTBD13C9JR72 458 aa11.54□□□□□ -0.56
TCOF1-203ENST00000394269 PHBP35232 272 aa11.54□□□□□ -0.56
TCOF1-203ENST00000394269 DEFB115Q30KQ5 88 aa11.54□□□□□ -0.56
TCOF1-203ENST00000394269 EMC10Q5UCC4 262 aa11.54□□□□□ -0.56
TCOF1-203ENST00000394269 SDHAF4Q5VUM1 108 aa11.54□□□□□ -0.56
TCOF1-203ENST00000394269 MFSD5Q6N075 450 aa11.54□□□□□ -0.56
TCOF1-203ENST00000394269 MICALCLQ6ZW33 695 aa11.54□□□□□ -0.56
TCOF1-203ENST00000394269 ZDHHC17Q8IUH5 632 aa11.54□□□□□ -0.56
TCOF1-203ENST00000394269 PPM1NQ8N819 430 aa11.54□□□□□ -0.56
TCOF1-203ENST00000394269 ATP11CQ8NB49 1132 aa11.54□□□□□ -0.56
TCOF1-203ENST00000394269 CD99L2Q8TCZ2 262 aa11.54□□□□□ -0.56
TCOF1-203ENST00000394269 STK32AQ8WU08 396 aa11.54□□□□□ -0.56
TCOF1-203ENST00000394269 ATXN2LQ8WWM7 1075 aaKnown RBP11.54□□□□□ -0.56
TCOF1-203ENST00000394269 TTC25Q96NG3 672 aa11.54□□□□□ -0.56
TCOF1-203ENST00000394269 USP29Q9HBJ7 922 aa11.54□□□□□ -0.56
TCOF1-203ENST00000394269 PIGVQ9NUD9 493 aa11.54□□□□□ -0.56
TCOF1-203ENST00000394269 FARP1Q9Y4F1 1045 aaPredicted RBP11.54□□□□□ -0.56
TCOF1-203ENST00000394269 PRUNE2Q8WUY3 3088 aa11.54□□□□□ -0.56
TCOF1-203ENST00000394269 TMEM88BA6NKF7 163 aa11.54□□□□□ -0.56
TCOF1-203ENST00000394269 FAM155BO75949 473 aa11.54□□□□□ -0.56
TCOF1-203ENST00000394269 METTL18O95568 372 aa11.54□□□□□ -0.56
TCOF1-203ENST00000394269 ATP2A2P16615 1042 aaKnown RBP11.54□□□□□ -0.56
TCOF1-203ENST00000394269 GSCP56915 257 aaPredicted RBP11.54□□□□□ -0.56
TCOF1-203ENST00000394269 FAM35AQ86V20 835 aa11.54□□□□□ -0.56
TCOF1-203ENST00000394269 SCAMP5Q8TAC9 235 aa11.54□□□□□ -0.56
TCOF1-203ENST00000394269 SMOQ99835 787 aa11.54□□□□□ -0.56
TCOF1-203ENST00000394269 TMEM109Q9BVC6 243 aa11.54□□□□□ -0.56
TCOF1-203ENST00000394269 KLC2Q9H0B6 622 aa11.54□□□□□ -0.56
TCOF1-203ENST00000394269 STAP1Q9ULZ2 295 aa11.54□□□□□ -0.56
TCOF1-203ENST00000394269 CLUHO75153 1309 aa11.54□□□□□ -0.56
TCOF1-203ENST00000394269 KPNA6O60684 536 aa11.54□□□□□ -0.56
TCOF1-203ENST00000394269 SESN2P58004 480 aaPredicted RBP11.54□□□□□ -0.56
TCOF1-203ENST00000394269 SPARCL1Q14515 664 aa11.54□□□□□ -0.56
TCOF1-203ENST00000394269 SLC25A52Q3SY17 297 aa11.54□□□□□ -0.56
TCOF1-203ENST00000394269 CEP128Q6ZU80 1094 aa11.54□□□□□ -0.56
TCOF1-203ENST00000394269 SPOCK2Q92563 424 aa11.54□□□□□ -0.56
TCOF1-203ENST00000394269 PGLYRP2Q96PD5 576 aa11.54□□□□□ -0.56
TCOF1-203ENST00000394269 TGS1Q96RS0 853 aaKnown RBP11.54□□□□□ -0.56
TCOF1-203ENST00000394269 PAFAH2Q99487 392 aa11.54□□□□□ -0.56
TCOF1-203ENST00000394269 FAM72CH0Y354 149 aa11.53□□□□□ -0.56
TCOF1-203ENST00000394269 DRD4P21917 467 aa11.53□□□□□ -0.56
TCOF1-203ENST00000394269 WARSP23381 471 aaKnown RBP11.53□□□□□ -0.56
TCOF1-203ENST00000394269 OR1G1P47890 313 aa11.53□□□□□ -0.56
TCOF1-203ENST00000394269 LPIN1Q14693 890 aa11.53□□□□□ -0.56
TCOF1-203ENST00000394269 KBTBD12Q3ZCT8 623 aa11.53□□□□□ -0.56
TCOF1-203ENST00000394269 FAM72AQ5TYM5 149 aa11.53□□□□□ -0.56
TCOF1-203ENST00000394269 FAM72DQ6L9T8 149 aa11.53□□□□□ -0.56
TCOF1-203ENST00000394269 RWDD4Q6NW29 188 aaKnown RBP11.53□□□□□ -0.56
TCOF1-203ENST00000394269 FAM72BQ86X60 149 aa11.53□□□□□ -0.56
TCOF1-203ENST00000394269 METTL23Q86XA0 190 aa11.53□□□□□ -0.56
TCOF1-203ENST00000394269 VPS52Q8N1B4 723 aa11.53□□□□□ -0.56
TCOF1-203ENST00000394269 MYLPFQ96A32 169 aa11.53□□□□□ -0.56
TCOF1-203ENST00000394269 GLT1D1Q96MS3 346 aa11.53□□□□□ -0.56
TCOF1-203ENST00000394269 POPDC2Q9HBU9 364 aa11.53□□□□□ -0.56
TCOF1-203ENST00000394269 DTLQ9NZJ0 730 aa11.53□□□□□ -0.56
TCOF1-203ENST00000394269 PAK5Q9P286 719 aa11.53□□□□□ -0.56
TCOF1-203ENST00000394269 ZC3H7BQ9UGR2 993 aaKnown RBP11.53□□□□□ -0.56
TCOF1-203ENST00000394269 CAPN7Q9Y6W3 813 aa11.53□□□□□ -0.56
TCOF1-203ENST00000394269 LRPAP1P30533 357 aa11.53□□□□□ -0.56
TCOF1-203ENST00000394269 RPA3P35244 121 aaPredicted RBP11.53□□□□□ -0.56
TCOF1-203ENST00000394269 LHX1P48742 406 aa11.53□□□□□ -0.56
TCOF1-203ENST00000394269 GEMIN4P57678 1058 aaKnown RBP11.53□□□□□ -0.56
TCOF1-203ENST00000394269 TAZQ16635 292 aa11.53□□□□□ -0.56
TCOF1-203ENST00000394269 XKR4Q5GH76 650 aa11.53□□□□□ -0.56
TCOF1-203ENST00000394269 EFHC2Q5JST6 749 aa11.53□□□□□ -0.56
TCOF1-203ENST00000394269 GPR152Q8TDT2 470 aa11.53□□□□□ -0.56
TCOF1-203ENST00000394269 UBN1Q9NPG3 1134 aa11.53□□□□□ -0.56
TCOF1-203ENST00000394269 MTMR10Q9NXD2 777 aa11.53□□□□□ -0.56
TCOF1-203ENST00000394269 EEF2KO00418 725 aaKnown RBP11.53□□□□□ -0.56
TCOF1-203ENST00000394269 MDM4O15151 490 aa11.53□□□□□ -0.56
TCOF1-203ENST00000394269 ADAMTS4O75173 837 aa11.53□□□□□ -0.56
TCOF1-203ENST00000394269 ENDOD1O94919 500 aa11.53□□□□□ -0.56
TCOF1-203ENST00000394269 MOCS2O96007 188 aaPredicted RBP11.53□□□□□ -0.56
TCOF1-203ENST00000394269 GRIK1P39086 918 aa11.53□□□□□ -0.56
TCOF1-203ENST00000394269 PTPN9P43378 593 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms