RNA–Protein interactions for RNA: ENST00000378726.1

SSU72-204, Transcript of SSU72 homolog, RNA polymerase II CTD phosphatase, humanhuman

TSL 2

Gene SSU72, Length 2,238 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72-204ENST00000378726 CXorf56Q9H5V9 222 aa20.18■□□□□ 0.82
SSU72-204ENST00000378726 ELAC1Q9H777 363 aaKnown RBP20.18■□□□□ 0.82
SSU72-204ENST00000378726 C10orf88Q9H8K7 445 aa20.18■□□□□ 0.82
SSU72-204ENST00000378726 POPDC2Q9HBU9 364 aa20.18■□□□□ 0.82
SSU72-204ENST00000378726 CNGB3Q9NQW8 809 aa20.18■□□□□ 0.82
SSU72-204ENST00000378726 HHLA1C9JL84 531 aa20.18■□□□□ 0.82
SSU72-204ENST00000378726 USP17L7P0C7H9 530 aa20.18■□□□□ 0.82
SSU72-204ENST00000378726 RARGP13631 454 aa20.18■□□□□ 0.82
SSU72-204ENST00000378726 DAOAP59103 153 aa20.18■□□□□ 0.82
SSU72-204ENST00000378726 TSPY1Q01534 308 aa20.18■□□□□ 0.82
SSU72-204ENST00000378726 XRCC4Q13426 336 aa20.18■□□□□ 0.82
SSU72-204ENST00000378726 SNCBQ16143 134 aa20.18■□□□□ 0.82
SSU72-204ENST00000378726 P3H1Q32P28 736 aa20.18■□□□□ 0.82
SSU72-204ENST00000378726 PPP6R3Q5H9R7 873 aaPredicted RBP20.18■□□□□ 0.82
SSU72-204ENST00000378726 C6orf118Q5T5N4 469 aa20.18■□□□□ 0.82
SSU72-204ENST00000378726 SYPL2Q5VXT5 272 aa20.18■□□□□ 0.82
SSU72-204ENST00000378726 CCDC25Q86WR0 208 aa20.18■□□□□ 0.82
SSU72-204ENST00000378726 ABI1Q8IZP0 508 aa20.18■□□□□ 0.82
SSU72-204ENST00000378726 P3H4Q92791 437 aa20.18■□□□□ 0.82
SSU72-204ENST00000378726 SGSM3Q96HU1 749 aa20.18■□□□□ 0.82
SSU72-204ENST00000378726 PKMYT1Q99640 499 aa20.18■□□□□ 0.82
SSU72-204ENST00000378726 PRMT1Q99873 361 aaKnown RBP20.18■□□□□ 0.82
SSU72-204ENST00000378726 DHX35Q9H5Z1 703 aaKnown RBP20.18■□□□□ 0.82
SSU72-204ENST00000378726 PRG3Q9Y2Y8 225 aaPredicted RBP20.18■□□□□ 0.82
SSU72-204ENST00000378726 YJEFN3A6XGL0 299 aa20.17■□□□□ 0.82
SSU72-204ENST00000378726 E7ENQ6 273 aa20.17■□□□□ 0.82
SSU72-204ENST00000378726 RIPK2O43353 540 aa20.17■□□□□ 0.82
SSU72-204ENST00000378726 AGTP01019 485 aa20.17■□□□□ 0.82
SSU72-204ENST00000378726 IFNB1P01574 187 aa20.17■□□□□ 0.82
SSU72-204ENST00000378726 L1CAMP32004 1257 aa20.17■□□□□ 0.82
SSU72-204ENST00000378726 EIF3EP60228 445 aaKnown RBP20.17■□□□□ 0.82
SSU72-204ENST00000378726 MAPRE1Q15691 268 aaKnown RBP20.17■□□□□ 0.82
SSU72-204ENST00000378726 IZUMO3Q5VZ72 239 aa20.17■□□□□ 0.82
SSU72-204ENST00000378726 PIGWQ7Z7B1 504 aa20.17■□□□□ 0.82
SSU72-204ENST00000378726 NT5C3BQ969T7 300 aa20.17■□□□□ 0.82
SSU72-204ENST00000378726 MAGEB5Q9BZ81 275 aa20.17■□□□□ 0.82
SSU72-204ENST00000378726 INTS9Q9NV88 658 aaKnown RBP20.17■□□□□ 0.82
SSU72-204ENST00000378726 TPX2Q9ULW0 747 aaKnown RBP20.17■□□□□ 0.82
SSU72-204ENST00000378726 NAALADL1Q9UQQ1 740 aa20.17■□□□□ 0.82
SSU72-204ENST00000378726 CAPN9O14815 690 aa20.17■□□□□ 0.82
SSU72-204ENST00000378726 TADA2AO75478 443 aa20.17■□□□□ 0.82
SSU72-204ENST00000378726 DNAJC8O75937 253 aaPredicted RBP20.17■□□□□ 0.82
SSU72-204ENST00000378726 PITX1P78337 314 aaPredicted RBP20.17■□□□□ 0.82
SSU72-204ENST00000378726 NPNTQ6UXI9 565 aa20.17■□□□□ 0.82
SSU72-204ENST00000378726 CCDC185Q8N715 623 aa20.17■□□□□ 0.82
SSU72-204ENST00000378726 SLC2A13Q96QE2 648 aa20.17■□□□□ 0.82
SSU72-204ENST00000378726 NPY6RQ99463 290 aa20.17■□□□□ 0.82
SSU72-204ENST00000378726 STAP1Q9ULZ2 295 aa20.17■□□□□ 0.82
SSU72-204ENST00000378726 TMEM189-UBE2V1I3L0A0 370 aa20.16■□□□□ 0.82
SSU72-204ENST00000378726 FYNP06241 537 aa20.16■□□□□ 0.82
SSU72-204ENST00000378726 RDXP35241 583 aaKnown RBP20.16■□□□□ 0.82
SSU72-204ENST00000378726 GPS1Q13098 491 aa20.16■□□□□ 0.82
SSU72-204ENST00000378726 DPYSL2Q16555 572 aa20.16■□□□□ 0.82
SSU72-204ENST00000378726 FAM131BQ86XD5 332 aa20.16■□□□□ 0.82
SSU72-204ENST00000378726 PLD5Q8N7P1 536 aa20.16■□□□□ 0.82
SSU72-204ENST00000378726 PCDH19Q8TAB3 1148 aa20.16■□□□□ 0.82
SSU72-204ENST00000378726 RSAD2Q8WXG1 361 aa20.16■□□□□ 0.82
SSU72-204ENST00000378726 SCLYQ96I15 445 aa20.16■□□□□ 0.82
SSU72-204ENST00000378726 AAASQ9NRG9 546 aa20.16■□□□□ 0.82
SSU72-204ENST00000378726 LRFN2Q9ULH4 789 aa20.16■□□□□ 0.82
SSU72-204ENST00000378726 AP4E1Q9UPM8 1137 aa20.16■□□□□ 0.82
SSU72-204ENST00000378726 M0QYT0 321 aa20.15■□□□□ 0.82
SSU72-204ENST00000378726 MCF2LO15068 1137 aa20.15■□□□□ 0.82
SSU72-204ENST00000378726 ZBED1O96006 694 aa20.15■□□□□ 0.82
SSU72-204ENST00000378726 RBP3P10745 1247 aa20.15■□□□□ 0.82
SSU72-204ENST00000378726 CHKAP35790 457 aa20.15■□□□□ 0.82
SSU72-204ENST00000378726 AUHQ13825 339 aaKnown RBP20.15■□□□□ 0.82
SSU72-204ENST00000378726 PREPLQ4J6C6 727 aaPredicted RBP20.15■□□□□ 0.82
SSU72-204ENST00000378726 CCDC38Q502W7 563 aa20.15■□□□□ 0.82
SSU72-204ENST00000378726 C1orf228Q6PIY5 440 aa20.15■□□□□ 0.82
SSU72-204ENST00000378726 CTU1Q7Z7A3 348 aaKnown RBP20.15■□□□□ 0.82
SSU72-204ENST00000378726 VSIG1Q86XK7 387 aa20.15■□□□□ 0.82
SSU72-204ENST00000378726 PQLC3Q8N755 202 aa20.15■□□□□ 0.82
SSU72-204ENST00000378726 ELAC2Q9BQ52 826 aaKnown RBP20.15■□□□□ 0.82
SSU72-204ENST00000378726 ZNF670Q9BS34 389 aa20.15■□□□□ 0.82
SSU72-204ENST00000378726 TMEM109Q9BVC6 243 aa20.15■□□□□ 0.82
SSU72-204ENST00000378726 SYNJ2BP-COX16A0A087WUM0 186 aa20.15■□□□□ 0.82
SSU72-204ENST00000378726 CCL23P55773 120 aa20.15■□□□□ 0.82
SSU72-204ENST00000378726 TCTN1Q2MV58 587 aa20.15■□□□□ 0.82
SSU72-204ENST00000378726 TNFAIP8L3Q5GJ75 292 aa20.15■□□□□ 0.82
SSU72-204ENST00000378726 SLC39A5Q6ZMH5 540 aa20.15■□□□□ 0.82
SSU72-204ENST00000378726 APBB2Q92870 758 aa20.15■□□□□ 0.82
SSU72-204ENST00000378726 NRDE2Q9H7Z3 1164 aa20.15■□□□□ 0.82
SSU72-204ENST00000378726 PCDH9Q9HC56 1237 aa20.15■□□□□ 0.82
SSU72-204ENST00000378726 DMAP1Q9NPF5 467 aaPredicted RBP20.15■□□□□ 0.82
SSU72-204ENST00000378726 MTMR10Q9NXD2 777 aa20.15■□□□□ 0.82
SSU72-204ENST00000378726 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP20.15■□□□□ 0.82
SSU72-204ENST00000378726 COX16Q9P0S2 106 aa20.15■□□□□ 0.82
SSU72-204ENST00000378726 DNALI1O14645 258 aaPredicted RBP20.14■□□□□ 0.81
SSU72-204ENST00000378726 APOL1O14791 398 aa20.14■□□□□ 0.81
SSU72-204ENST00000378726 RASGRF2O14827 1237 aa20.14■□□□□ 0.81
SSU72-204ENST00000378726 IFNAR2P48551 515 aa20.14■□□□□ 0.81
SSU72-204ENST00000378726 GATMP50440 423 aa20.14■□□□□ 0.81
SSU72-204ENST00000378726 GDF10P55107 478 aa20.14■□□□□ 0.81
SSU72-204ENST00000378726 BCAR1P56945 870 aa20.14■□□□□ 0.81
SSU72-204ENST00000378726 NME3Q13232 169 aa20.14■□□□□ 0.81
SSU72-204ENST00000378726 OTUD1Q5VV17 481 aaPredicted RBP20.14■□□□□ 0.81
SSU72-204ENST00000378726 HIBCHQ6NVY1 386 aaPredicted RBP20.14■□□□□ 0.81
SSU72-204ENST00000378726 BNIPLQ7Z465 357 aa20.14■□□□□ 0.81
SSU72-204ENST00000378726 ZC3H18Q86VM9 953 aaKnown RBP20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms