RNA–Protein interactions for RNA: ENST00000378161.5

NPHP4-202, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,370 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-202ENST00000378161 ZNF34Q8IZ26 560 aa12.12□□□□□ -0.47
NPHP4-202ENST00000378161 TRUB1Q8WWH5 349 aaKnown RBP12.12□□□□□ -0.47
NPHP4-202ENST00000378161 NSUN4Q96CB9 384 aaKnown RBP12.12□□□□□ -0.47
NPHP4-202ENST00000378161 MAGED4Q96JG8 741 aa12.12□□□□□ -0.47
NPHP4-202ENST00000378161 MTMR12Q9C0I1 747 aa12.12□□□□□ -0.47
NPHP4-202ENST00000378161 REXO4Q9GZR2 422 aaKnown RBP12.12□□□□□ -0.47
NPHP4-202ENST00000378161 MAGEE1Q9HCI5 957 aa12.12□□□□□ -0.47
NPHP4-202ENST00000378161 POLHQ9Y253 713 aa12.12□□□□□ -0.47
NPHP4-202ENST00000378161 MRPL11Q9Y3B7 192 aaKnown RBP12.12□□□□□ -0.47
NPHP4-202ENST00000378161 MEIS1O00470 390 aa12.12□□□□□ -0.47
NPHP4-202ENST00000378161 M6PRP20645 277 aa12.12□□□□□ -0.47
NPHP4-202ENST00000378161 CDK18Q07002 472 aa12.12□□□□□ -0.47
NPHP4-202ENST00000378161 TRIM60Q495X7 471 aa12.12□□□□□ -0.47
NPHP4-202ENST00000378161 C12orf60Q5U649 245 aa12.12□□□□□ -0.47
NPHP4-202ENST00000378161 PPP1R18Q6NYC8 613 aa12.12□□□□□ -0.47
NPHP4-202ENST00000378161 GALNT12Q8IXK2 581 aa12.12□□□□□ -0.47
NPHP4-202ENST00000378161 DEFB107AQ8IZN7 70 aa12.12□□□□□ -0.47
NPHP4-202ENST00000378161 SLC44A5Q8NCS7 719 aa12.12□□□□□ -0.47
NPHP4-202ENST00000378161 PSMA8Q8TAA3 256 aa12.12□□□□□ -0.47
NPHP4-202ENST00000378161 SDCCAG3Q96C92 435 aa12.12□□□□□ -0.47
NPHP4-202ENST00000378161 CDK5RAP1Q96SZ6 601 aaKnown RBP12.12□□□□□ -0.47
NPHP4-202ENST00000378161 CIB1Q99828 191 aa12.12□□□□□ -0.47
NPHP4-202ENST00000378161 TEKT3Q9BXF9 490 aa12.12□□□□□ -0.47
NPHP4-202ENST00000378161 ANO3Q9BYT9 981 aa12.12□□□□□ -0.47
NPHP4-202ENST00000378161 KANSL2Q9H9L4 492 aa12.12□□□□□ -0.47
NPHP4-202ENST00000378161 COPS7BQ9H9Q2 264 aaPredicted RBP12.12□□□□□ -0.47
NPHP4-202ENST00000378161 PPCSQ9HAB8 311 aa12.12□□□□□ -0.47
NPHP4-202ENST00000378161 A8MX80 341 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 MUSKO15146 869 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 IFNB1P01574 187 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 ZNF23P17027 643 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 SOX5P35711 763 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 KRT17Q04695 432 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 RRP1BQ14684 758 aaKnown RBP12.11□□□□□ -0.47
NPHP4-202ENST00000378161 LDLRAP1Q5SW96 308 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 STYK1Q6J9G0 422 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 BORAQ6PGQ7 559 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 OTOAQ7RTW8 1153 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 SLC51BQ86UW2 128 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 LINC00469Q8N7U9 141 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 ADCY4Q8NFM4 1077 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 PIK3R3Q92569 461 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 CLPTM1LQ96KA5 538 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 NACC1Q96RE7 527 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 TMEM246Q9BRR3 403 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 MTG1Q9BT17 334 aaPredicted RBP12.11□□□□□ -0.47
NPHP4-202ENST00000378161 ADAM33Q9BZ11 813 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 PSMD13Q9UNM6 376 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 CCDC182A6NF36 153 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 ABCB1P08183 1280 aaPredicted RBP12.11□□□□□ -0.47
NPHP4-202ENST00000378161 ATXN3P54252 364 aaPredicted RBP12.11□□□□□ -0.47
NPHP4-202ENST00000378161 RAD51Q06609 339 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 C16orf89Q6UX73 402 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 RNF207Q6ZRF8 634 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 PHC2Q8IXK0 858 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 RBM15BQ8NDT2 890 aaKnown RBP12.11□□□□□ -0.47
NPHP4-202ENST00000378161 C7orf57Q8NEG2 295 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 PDCD6IPQ8WUM4 868 aaKnown RBP12.11□□□□□ -0.47
NPHP4-202ENST00000378161 PSPC1Q8WXF1 523 aaKnown RBP12.11□□□□□ -0.47
NPHP4-202ENST00000378161 CELF1Q92879 486 aaKnown RBP12.11□□□□□ -0.47
NPHP4-202ENST00000378161 SGF29Q96ES7 293 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 SIPA1Q96FS4 1042 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 SLC4A5Q9BY07 1137 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 WDR11Q9BZH6 1224 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 MTFR1LQ9H019 292 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 KLC2Q9H0B6 622 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 FBXO6Q9NRD1 293 aaPredicted RBP12.11□□□□□ -0.47
NPHP4-202ENST00000378161 C1orf112Q9NSG2 853 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 PSMC3IPQ9P2W1 217 aaPredicted RBP12.11□□□□□ -0.47
NPHP4-202ENST00000378161 ZNHIT2Q9UHR6 403 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 MEI4A8MW99 385 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 ATP6V1G2-DDX39BF2Z307 99 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 IL12AP29459 219 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 SP4Q02446 784 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 ANO4Q32M45 955 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 ZBED5Q49AG3 693 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 C6orf52Q5T4I8 152 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 UBE2UQ5VVX9 321 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 ZBTB49Q6ZSB9 765 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 BRSK1Q8TDC3 778 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 IER2Q9BTL4 223 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 KCTD5Q9NXV2 234 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 ADA2Q9NZK5 511 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 PXDNQ92626 1479 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 FOXD2O60548 495 aaPredicted RBP12.11□□□□□ -0.47
NPHP4-202ENST00000378161 TOMM70O94826 608 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 ASNSP08243 561 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 NELFEP18615 380 aaKnown RBP12.11□□□□□ -0.47
NPHP4-202ENST00000378161 SLC30A10Q6XR72 485 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 BBS7Q8IWZ6 715 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 NT5C1BQ96P26 610 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 ERGIC3Q9Y282 383 aa12.11□□□□□ -0.47
NPHP4-202ENST00000378161 A6NL46 340 aa12.1□□□□□ -0.47
NPHP4-202ENST00000378161 A8MU76 341 aa12.1□□□□□ -0.47
NPHP4-202ENST00000378161 USP17L5A8MUK1 530 aa12.1□□□□□ -0.47
NPHP4-202ENST00000378161 PSTPIP1O43586 416 aa12.1□□□□□ -0.47
NPHP4-202ENST00000378161 RNASEH2AO75792 299 aaKnown RBP12.1□□□□□ -0.47
NPHP4-202ENST00000378161 RGS20O76081 388 aa12.1□□□□□ -0.47
NPHP4-202ENST00000378161 ALX3O95076 343 aa12.1□□□□□ -0.47
NPHP4-202ENST00000378161 H6PDO95479 791 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms