RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 DGAT1O75907 488 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 ATP6V1G2O95670 118 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 SAMD4BQ5PRF9 694 aaKnown RBP11.94□□□□□ -0.5
VPS13A-205ENST00000376636 MTDHQ86UE4 582 aaKnown RBP11.94□□□□□ -0.5
VPS13A-205ENST00000376636 CLVS1Q8IUQ0 354 aaPredicted RBP11.94□□□□□ -0.5
VPS13A-205ENST00000376636 AADATQ8N5Z0 425 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 CLHC1Q8NHS4 586 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 MYCBPAPQ8TBZ2 947 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 SHCBP1LQ9BZQ2 653 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 ASAP1Q9ULH1 1129 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 INPP4BO15327 924 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 PRKAR2AP13861 404 aaKnown RBP11.94□□□□□ -0.5
VPS13A-205ENST00000376636 VBP1P61758 197 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 C5orf22Q49AR2 442 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 PGBD2Q6P3X8 592 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 UCMAQ8WVF2 138 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 SGF29Q96ES7 293 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 SENP2Q9HC62 589 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 MPOP05164 745 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 UCHL3P15374 230 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 ATP2C1P98194 919 aaPredicted RBP11.93□□□□□ -0.5
VPS13A-205ENST00000376636 SUZ12Q15022 739 aaKnown RBP11.93□□□□□ -0.5
VPS13A-205ENST00000376636 FGD3Q5JSP0 725 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 C2orf69Q8N8R5 385 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 USP7Q93009 1102 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 CAB39LQ9H9S4 337 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 EURLQ9NYK6 297 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 CPSF4O95639 269 aaKnown RBP11.93□□□□□ -0.5
VPS13A-205ENST00000376636 SMTNL2Q2TAL5 461 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 OTUD3Q5T2D3 398 aaPredicted RBP11.93□□□□□ -0.5
VPS13A-205ENST00000376636 BLOC1S5Q8TDH9 187 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 JMJD4Q9H9V9 463 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 CCDC177Q9NQR7 707 aaPredicted RBP11.93□□□□□ -0.5
VPS13A-205ENST00000376636 IGSF9BQ9UPX0 1349 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 KIF20BQ96Q89 1820 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 CLOCKO15516 846 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 IL2P60568 153 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 USP21Q9UK80 565 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 MTA1Q13330 715 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 PYDC2Q56P42 97 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 TSPAN14Q8NG11 270 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 KIF28PB7ZC32 967 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 OR6A2O95222 327 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 RBP3P10745 1247 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 GARTP22102 1010 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 PNPLA4P41247 253 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 SLC34A1Q06495 639 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 IER5Q5VY09 327 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 C8orf59Q8N0T1 100 aaPredicted RBP11.93□□□□□ -0.5
VPS13A-205ENST00000376636 SLC38A2Q96QD8 506 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 MYO18AQ92614 2054 aaKnown RBP11.93□□□□□ -0.5
VPS13A-205ENST00000376636 PLOD3O60568 738 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 ALOX5P09917 674 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 SKIV2L2P42285 1042 aaKnown RBP11.93□□□□□ -0.5
VPS13A-205ENST00000376636 CRKLP46109 303 aaKnown RBP11.93□□□□□ -0.5
VPS13A-205ENST00000376636 PDIA5Q14554 519 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 NR1D2Q14995 579 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 PDIA6Q15084 440 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 ERMARDQ5T6L9 678 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 RNF149Q8NC42 400 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 MED8Q96G25 268 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 CDK5RAP1Q96SZ6 601 aaKnown RBP11.93□□□□□ -0.5
VPS13A-205ENST00000376636 SEPT5Q99719 369 aaPredicted RBP11.93□□□□□ -0.5
VPS13A-205ENST00000376636 TMEM120AQ9BXJ8 343 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 GPN1Q9HCN4 374 aaPredicted RBP11.93□□□□□ -0.5
VPS13A-205ENST00000376636 MYH3P11055 1940 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 PTGES3LE9PB15 166 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 PDK2Q15119 407 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 NR6A1Q15406 480 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 CRELD1Q96HD1 420 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 TMEM8AQ9HCN3 771 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 RRN3Q9NYV6 651 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 ANKRD6Q9Y2G4 727 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 USP17L5A8MUK1 530 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 EYA4O95677 639 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 STAU1O95793 577 aaKnown RBP11.93□□□□□ -0.5
VPS13A-205ENST00000376636 NUDT14O95848 222 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 ETFBP38117 255 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 MAPK7Q13164 816 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 MINDY2Q8NBR6 621 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 CCSER1Q9C0I3 900 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 CLN6Q9NWW5 311 aa11.93□□□□□ -0.5
VPS13A-205ENST00000376636 AREL1O15033 823 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 CYP2E1P05181 493 aaPredicted RBP11.92□□□□□ -0.5
VPS13A-205ENST00000376636 GEMP55040 296 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 TMEM132BQ14DG7 1078 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 TMPRSS6Q8IU80 811 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 KCTD17Q8N5Z5 321 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 ATP6V0D2Q8N8Y2 350 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 PNKPQ96T60 521 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 SAE1Q9UBE0 346 aaPredicted RBP11.92□□□□□ -0.5
VPS13A-205ENST00000376636 LIN7AO14910 233 aaPredicted RBP11.92□□□□□ -0.5
VPS13A-205ENST00000376636 MAGEB16A2A368 324 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 NCAM2O15394 837 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 RHOBTB3O94955 611 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 PRKCBP05771 671 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 SLC11A2P49281 568 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 ERICH5Q6P6B1 374 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 DBNDD1Q9H9R9 158 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 CHST12Q9NRB3 414 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms