RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 RNF40O75150 1001 aa16.54■□□□□ 0.24
CLN3-201ENST00000333496 CORO1AP31146 461 aaKnown RBP16.54■□□□□ 0.24
CLN3-201ENST00000333496 EIF2DP41214 584 aaKnown RBP16.54■□□□□ 0.24
CLN3-201ENST00000333496 ZNF165P49910 485 aa16.54■□□□□ 0.24
CLN3-201ENST00000333496 CCR3P51677 355 aa16.54■□□□□ 0.24
CLN3-201ENST00000333496 IQCB1Q15051 598 aa16.54■□□□□ 0.24
CLN3-201ENST00000333496 SYCP1Q15431 976 aa16.54■□□□□ 0.24
CLN3-201ENST00000333496 TRIP4Q15650 581 aaPredicted RBP16.54■□□□□ 0.24
CLN3-201ENST00000333496 NAT16Q8N8M0 369 aa16.54■□□□□ 0.24
CLN3-201ENST00000333496 ANKRD20A12PQ8NF67 263 aa16.54■□□□□ 0.24
CLN3-201ENST00000333496 RNF139Q8WU17 664 aa16.54■□□□□ 0.24
CLN3-201ENST00000333496 DDX1Q92499 740 aaKnown RBP16.54■□□□□ 0.24
CLN3-201ENST00000333496 EXOC4Q96A65 974 aa16.54■□□□□ 0.24
CLN3-201ENST00000333496 PIWIL1Q96J94 861 aaKnown RBP16.54■□□□□ 0.24
CLN3-201ENST00000333496 CPXM1Q96SM3 734 aa16.54■□□□□ 0.24
CLN3-201ENST00000333496 STRIP2Q9ULQ0 834 aa16.54■□□□□ 0.24
CLN3-201ENST00000333496 R4GN57 208 aa16.54■□□□□ 0.24
CLN3-201ENST00000333496 FRYLO94915 3013 aa16.54■□□□□ 0.24
CLN3-201ENST00000333496 PROB1E7EW31 1015 aa16.53■□□□□ 0.24
CLN3-201ENST00000333496 MSI1O43347 362 aaKnown RBP16.53■□□□□ 0.24
CLN3-201ENST00000333496 CYP11B1P15538 503 aa16.53■□□□□ 0.24
CLN3-201ENST00000333496 CXCL12P48061 93 aa16.53■□□□□ 0.24
CLN3-201ENST00000333496 JAM2P57087 298 aa16.53■□□□□ 0.24
CLN3-201ENST00000333496 POLR2FP61218 127 aaKnown RBP16.53■□□□□ 0.24
CLN3-201ENST00000333496 ANO4Q32M45 955 aa16.53■□□□□ 0.24
CLN3-201ENST00000333496 FBXO43Q4G163 708 aa16.53■□□□□ 0.24
CLN3-201ENST00000333496 TPGS1Q6ZTW0 290 aa16.53■□□□□ 0.24
CLN3-201ENST00000333496 DENND1CQ8IV53 801 aa16.53■□□□□ 0.24
CLN3-201ENST00000333496 ERGIC2Q96RQ1 377 aa16.53■□□□□ 0.24
CLN3-201ENST00000333496 PNKPQ96T60 521 aa16.53■□□□□ 0.24
CLN3-201ENST00000333496 NLRC4Q9NPP4 1024 aa16.53■□□□□ 0.24
CLN3-201ENST00000333496 POLR3BQ9NW08 1133 aaPredicted RBP16.53■□□□□ 0.24
CLN3-201ENST00000333496 AGO1Q9UL18 857 aaKnown RBP16.53■□□□□ 0.24
CLN3-201ENST00000333496 K7ESF4 209 aa16.52■□□□□ 0.24
CLN3-201ENST00000333496 TRIM24O15164 1050 aa16.52■□□□□ 0.24
CLN3-201ENST00000333496 PAPSS2O95340 614 aaPredicted RBP16.52■□□□□ 0.24
CLN3-201ENST00000333496 KRT9P35527 623 aa16.52■□□□□ 0.24
CLN3-201ENST00000333496 BPIFB4P59827 614 aa16.52■□□□□ 0.24
CLN3-201ENST00000333496 UBXN1Q04323 297 aa16.52■□□□□ 0.24
CLN3-201ENST00000333496 C1orf131Q8NDD1 294 aaKnown RBP16.52■□□□□ 0.24
CLN3-201ENST00000333496 PLD4Q96BZ4 506 aa16.52■□□□□ 0.24
CLN3-201ENST00000333496 DCLK3Q9C098 648 aa16.52■□□□□ 0.24
CLN3-201ENST00000333496 MARK1Q9P0L2 795 aa16.52■□□□□ 0.24
CLN3-201ENST00000333496 NAALADL1Q9UQQ1 740 aa16.52■□□□□ 0.24
CLN3-201ENST00000333496 ZNF510Q9Y2H8 683 aa16.52■□□□□ 0.24
CLN3-201ENST00000333496 HBS1LQ9Y450 684 aaKnown RBP16.52■□□□□ 0.24
CLN3-201ENST00000333496 A0A0A0MRY4 1105 aa16.52■□□□□ 0.23
CLN3-201ENST00000333496 SMTNL1A8MU46 457 aa16.52■□□□□ 0.23
CLN3-201ENST00000333496 CHURC1-FNTBB4DL54 471 aa16.52■□□□□ 0.23
CLN3-201ENST00000333496 TEX33O43247 280 aa16.52■□□□□ 0.23
CLN3-201ENST00000333496 TULP3O75386 442 aa16.52■□□□□ 0.23
CLN3-201ENST00000333496 CHRM1P11229 460 aaPredicted RBP16.52■□□□□ 0.23
CLN3-201ENST00000333496 NCAM1P13591 858 aa16.52■□□□□ 0.23
CLN3-201ENST00000333496 TYRP14679 529 aa16.52■□□□□ 0.23
CLN3-201ENST00000333496 SYPL2Q5VXT5 272 aa16.52■□□□□ 0.23
CLN3-201ENST00000333496 NOP9Q86U38 636 aaKnown RBP16.52■□□□□ 0.23
CLN3-201ENST00000333496 ALYREFQ86V81 257 aaKnown RBP16.52■□□□□ 0.23
CLN3-201ENST00000333496 ZBTB44Q8NCP5 570 aa16.52■□□□□ 0.23
CLN3-201ENST00000333496 RPLP0P6Q8NHW5 317 aa16.52■□□□□ 0.23
CLN3-201ENST00000333496 EPS8L1Q8TE68 723 aa16.52■□□□□ 0.23
CLN3-201ENST00000333496 FAM149B1Q96BN6 582 aa16.52■□□□□ 0.23
CLN3-201ENST00000333496 PPP1R13BQ96KQ4 1090 aa16.52■□□□□ 0.23
CLN3-201ENST00000333496 BBS2Q9BXC9 721 aa16.52■□□□□ 0.23
CLN3-201ENST00000333496 NEDD8-MDP1E9PL57 170 aa16.51■□□□□ 0.23
CLN3-201ENST00000333496 SART1O43290 800 aaKnown RBP16.51■□□□□ 0.23
CLN3-201ENST00000333496 CACNG3O60359 315 aa16.51■□□□□ 0.23
CLN3-201ENST00000333496 GFPT2O94808 682 aa16.51■□□□□ 0.23
CLN3-201ENST00000333496 KAT7O95251 611 aa16.51■□□□□ 0.23
CLN3-201ENST00000333496 IGLV3-27P01718 113 aa16.51■□□□□ 0.23
CLN3-201ENST00000333496 HOXD11P31277 338 aaPredicted RBP16.51■□□□□ 0.23
CLN3-201ENST00000333496 CDH5P33151 784 aaPredicted RBP16.51■□□□□ 0.23
CLN3-201ENST00000333496 CHKAP35790 457 aa16.51■□□□□ 0.23
CLN3-201ENST00000333496 KDSRQ06136 332 aa16.51■□□□□ 0.23
CLN3-201ENST00000333496 DMWDQ09019 674 aa16.51■□□□□ 0.23
CLN3-201ENST00000333496 TAF5Q15542 800 aa16.51■□□□□ 0.23
CLN3-201ENST00000333496 PTPN20Q4JDL3 420 aa16.51■□□□□ 0.23
CLN3-201ENST00000333496 TAF3Q5VWG9 929 aa16.51■□□□□ 0.23
CLN3-201ENST00000333496 BEND5Q7L4P6 421 aa16.51■□□□□ 0.23
CLN3-201ENST00000333496 FAM217AQ8IXS0 508 aa16.51■□□□□ 0.23
CLN3-201ENST00000333496 DQX1Q8TE96 717 aaKnown RBP16.51■□□□□ 0.23
CLN3-201ENST00000333496 GOLGA1Q92805 767 aa16.51■□□□□ 0.23
CLN3-201ENST00000333496 ARHGEF4Q9NR80 690 aa16.51■□□□□ 0.23
CLN3-201ENST00000333496 PLK2Q9NYY3 685 aa16.51■□□□□ 0.23
CLN3-201ENST00000333496 ERBB2P04626 1255 aa16.5■□□□□ 0.23
CLN3-201ENST00000333496 APODP05090 189 aa16.5■□□□□ 0.23
CLN3-201ENST00000333496 FYB2Q5VWT5 728 aa16.5■□□□□ 0.23
CLN3-201ENST00000333496 LRSAM1Q6UWE0 723 aa16.5■□□□□ 0.23
CLN3-201ENST00000333496 CPXM2Q8N436 756 aa16.5■□□□□ 0.23
CLN3-201ENST00000333496 USP33Q8TEY7 942 aa16.5■□□□□ 0.23
CLN3-201ENST00000333496 BHMTQ93088 406 aa16.5■□□□□ 0.23
CLN3-201ENST00000333496 ZSCAN32Q9NX65 697 aa16.5■□□□□ 0.23
CLN3-201ENST00000333496 WDR35Q9P2L0 1181 aa16.5■□□□□ 0.23
CLN3-201ENST00000333496 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.49■□□□□ 0.23
CLN3-201ENST00000333496 LILRB5O75023 590 aa16.49■□□□□ 0.23
CLN3-201ENST00000333496 PENKP01210 267 aaPredicted RBP16.49■□□□□ 0.23
CLN3-201ENST00000333496 MMEP08473 750 aa16.49■□□□□ 0.23
CLN3-201ENST00000333496 SOX5P35711 763 aa16.49■□□□□ 0.23
CLN3-201ENST00000333496 GRIA2P42262 883 aa16.49■□□□□ 0.23
CLN3-201ENST00000333496 HARS2P49590 506 aaKnown RBP16.49■□□□□ 0.23
CLN3-201ENST00000333496 SEC13P55735 322 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms