RNA–Protein interactions for RNA: ENST00000325110.10

HMGCS1-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS1, Length 3,506 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-201ENST00000325110 ATP9BO43861 1147 aa13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 HNRNPCL1O60812 293 aaKnown RBP13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 OPHN1O60890 802 aa13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 SMNDC1O75940 238 aaKnown RBP eCLIP13.33□□□□□ -0.286e-7■■□□□ 13.7
HMGCS1-201ENST00000325110 IQCF3P0C7M6 154 aa13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 PRKD1Q15139 912 aaPredicted RBP13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 N4BP2L1Q5TBK1 243 aaPredicted RBP13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 RASIP1Q5U651 963 aa13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 TREML1Q86YW5 311 aa13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 STKLD1Q8NE28 680 aa13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 SPDYE1Q8NFV5 336 aaPredicted RBP13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 FNIP1Q8TF40 1166 aa13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 FRMD8P1Q9BZ68 369 aaPredicted RBP13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 XAB2Q9HCS7 855 aaKnown RBP13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 MFHAS1Q9Y4C4 1052 aa13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 EME2A4GXA9 379 aaPredicted RBP13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 C2CD4BA6NLJ0 364 aa13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 KCNK1O00180 336 aa13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 NEMP1O14524 444 aa13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 IRF6O14896 467 aa13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 CHADO15335 359 aa13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 HBP1O60381 514 aa13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 STK10O94804 968 aaKnown RBP13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 ITGBL1O95965 494 aaPredicted RBP13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 DLDP09622 509 aaKnown RBP13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 CCDC130P13994 396 aa13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 ARF4P18085 180 aaPredicted RBP13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 RPS12P25398 132 aaKnown RBP13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 MLH1P40692 756 aa13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 MRPS35P82673 323 aaKnown RBP13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 IZUMO2Q6UXV1 221 aa13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 CATSPER4Q7RTX7 472 aa13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 PID1Q7Z2X4 250 aa13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 PYROXD2Q8N2H3 581 aa13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 TEKT4Q8WW24 435 aa13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 PYDC1Q8WXC3 89 aa13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 ZNF408Q9H9D4 720 aa13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 ANGPTL2Q9UKU9 493 aa13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 EFR3BQ9Y2G0 817 aa13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 PLLPQ9Y342 182 aa13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 ATG7O95352 703 aa13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 MGAT1P26572 445 aa13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 ICAM3P32942 547 aa13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 ENPEPQ07075 957 aa13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 CCDC14Q49A88 953 aa13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 RNF220Q5VTB9 566 aa13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 NXNQ6DKJ4 435 aa13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 LBX2Q6XYB7 198 aa13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 TSHZ1Q6ZSZ6 1077 aa13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 SDCCAG8Q86SQ7 713 aaPredicted RBP13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 UBR7Q8N806 425 aa13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 GSDMBQ8TAX9 411 aa13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 ZNF398Q8TD17 642 aa13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 FAXDC2Q96IV6 333 aa13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 MRPL45Q9BRJ2 306 aaKnown RBP13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 KLHL8Q9P2G9 620 aaPredicted RBP13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 CPSF2Q9P2I0 782 aaKnown RBP13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 FIS1Q9Y3D6 152 aa13.33□□□□□ -0.28
HMGCS1-201ENST00000325110 ZNFX1Q9P2E3 1918 aaKnown RBP13.32□□□□□ -0.28
HMGCS1-201ENST00000325110 GOLGA8TH3BQL2 631 aa13.32□□□□□ -0.28
HMGCS1-201ENST00000325110 SMAPO00193 183 aa13.32□□□□□ -0.28
HMGCS1-201ENST00000325110 C6orf222P0C671 652 aaPredicted RBP13.32□□□□□ -0.28
HMGCS1-201ENST00000325110 SLC18A1P54219 525 aa13.32□□□□□ -0.28
HMGCS1-201ENST00000325110 TNFAIP2Q03169 654 aa13.32□□□□□ -0.28
HMGCS1-201ENST00000325110 KCNJ11Q14654 390 aa13.32□□□□□ -0.28
HMGCS1-201ENST00000325110 SLC10A6Q3KNW5 377 aa13.32□□□□□ -0.28
HMGCS1-201ENST00000325110 GRAMD1BQ3KR37 738 aa13.32□□□□□ -0.28
HMGCS1-201ENST00000325110 DCAF6Q58WW2 860 aa13.32□□□□□ -0.28
HMGCS1-201ENST00000325110 TRNP1Q6NT89 227 aa13.32□□□□□ -0.28
HMGCS1-201ENST00000325110 RIPOR1Q6ZS17 1223 aa13.32□□□□□ -0.28
HMGCS1-201ENST00000325110 CCDC160A6NGH7 325 aa13.32□□□□□ -0.28
HMGCS1-201ENST00000325110 PPEF2O14830 753 aa13.32□□□□□ -0.28
HMGCS1-201ENST00000325110 CFLARO15519 480 aa13.32□□□□□ -0.28
HMGCS1-201ENST00000325110 PTPN7P35236 360 aa13.32□□□□□ -0.28
HMGCS1-201ENST00000325110 TUBP50607 506 aa13.32□□□□□ -0.28
HMGCS1-201ENST00000325110 CUL3Q13618 768 aa13.32□□□□□ -0.28
HMGCS1-201ENST00000325110 TTLL4Q14679 1199 aa13.32□□□□□ -0.28
HMGCS1-201ENST00000325110 EML3Q32P44 896 aa13.32□□□□□ -0.28
HMGCS1-201ENST00000325110 CELF3Q5SZQ8 465 aaKnown RBP13.32□□□□□ -0.28
HMGCS1-201ENST00000325110 VWA5B1Q5TIE3 1220 aa13.32□□□□□ -0.28
HMGCS1-201ENST00000325110 RASSF3Q86WH2 238 aa13.32□□□□□ -0.28
HMGCS1-201ENST00000325110 MCRS1Q96EZ8 462 aa13.32□□□□□ -0.28
HMGCS1-201ENST00000325110 UNKQ9C0B0 810 aaKnown RBP13.32□□□□□ -0.28
HMGCS1-201ENST00000325110 PHACTR1Q9C0D0 580 aa13.32□□□□□ -0.28
HMGCS1-201ENST00000325110 NRDE2Q9H7Z3 1164 aa13.32□□□□□ -0.28
HMGCS1-201ENST00000325110 MAN1C1Q9NR34 630 aa13.32□□□□□ -0.28
HMGCS1-201ENST00000325110 SNTG2Q9NY99 539 aa13.32□□□□□ -0.28
HMGCS1-201ENST00000325110 ERAP1Q9NZ08 941 aa13.32□□□□□ -0.28
HMGCS1-201ENST00000325110 E7ESA3 106 aa13.31□□□□□ -0.28
HMGCS1-201ENST00000325110 ERVK-10P10266 1014 aa13.31□□□□□ -0.28
HMGCS1-201ENST00000325110 GOT1P17174 413 aa13.31□□□□□ -0.28
HMGCS1-201ENST00000325110 GNAZP19086 355 aa13.31□□□□□ -0.28
HMGCS1-201ENST00000325110 CDH5P33151 784 aaPredicted RBP13.31□□□□□ -0.28
HMGCS1-201ENST00000325110 ZNF280AP59817 542 aaPredicted RBP13.31□□□□□ -0.28
HMGCS1-201ENST00000325110 MBTD1Q05BQ5 628 aa13.31□□□□□ -0.28
HMGCS1-201ENST00000325110 OLIG2Q13516 323 aa13.31□□□□□ -0.28
HMGCS1-201ENST00000325110 HIC1Q14526 733 aa13.31□□□□□ -0.28
HMGCS1-201ENST00000325110 PPM1JQ5JR12 505 aa13.31□□□□□ -0.28
HMGCS1-201ENST00000325110 RAPH1Q70E73 1250 aa13.31□□□□□ -0.28
HMGCS1-201ENST00000325110 GSTCDQ8NEC7 633 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms