RNA–Protein interactions for RNA: ENST00000293748.9

SYNGAP1-201, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 4,556 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-201ENST00000293748 PTPRN2Q92932 1015 aa12.22□□□□□ -0.45
SYNGAP1-201ENST00000293748 TMEM8AQ9HCN3 771 aa12.22□□□□□ -0.45
SYNGAP1-201ENST00000293748 ARHGEF38Q9NXL2 777 aa12.22□□□□□ -0.45
SYNGAP1-201ENST00000293748 MAFBQ9Y5Q3 323 aaPredicted RBP12.22□□□□□ -0.45
SYNGAP1-201ENST00000293748 COL11A1P12107 1806 aaPredicted RBP12.22□□□□□ -0.45
SYNGAP1-201ENST00000293748 ADGRA3Q8IWK6 1321 aa12.22□□□□□ -0.45
SYNGAP1-201ENST00000293748 PLEKP08567 350 aaPredicted RBP12.22□□□□□ -0.45
SYNGAP1-201ENST00000293748 RALAP11233 206 aa12.22□□□□□ -0.45
SYNGAP1-201ENST00000293748 NME3Q13232 169 aa12.22□□□□□ -0.45
SYNGAP1-201ENST00000293748 NPY5RQ15761 445 aa12.22□□□□□ -0.45
SYNGAP1-201ENST00000293748 CDKAL1Q5VV42 579 aa12.22□□□□□ -0.45
SYNGAP1-201ENST00000293748 TTC23LQ6PF05 361 aa12.22□□□□□ -0.45
SYNGAP1-201ENST00000293748 ZNF410Q86VK4 478 aa12.22□□□□□ -0.45
SYNGAP1-201ENST00000293748 P3H2Q8IVL5 708 aa12.22□□□□□ -0.45
SYNGAP1-201ENST00000293748 FBXO25Q8TCJ0 367 aa12.22□□□□□ -0.45
SYNGAP1-201ENST00000293748 NR1H4Q96RI1 486 aaPredicted RBP12.22□□□□□ -0.45
SYNGAP1-201ENST00000293748 C16orf70Q9BSU1 422 aa12.22□□□□□ -0.45
SYNGAP1-201ENST00000293748 LMCD1Q9NZU5 365 aa12.22□□□□□ -0.45
SYNGAP1-201ENST00000293748 FAM32AQ9Y421 112 aaKnown RBP12.22□□□□□ -0.45
SYNGAP1-201ENST00000293748 ATG7O95352 703 aa12.21□□□□□ -0.45
SYNGAP1-201ENST00000293748 SGSM1Q2NKQ1 1148 aa12.21□□□□□ -0.45
SYNGAP1-201ENST00000293748 FAM111AQ96PZ2 611 aa12.21□□□□□ -0.45
SYNGAP1-201ENST00000293748 ILKAPQ9H0C8 392 aaPredicted RBP12.21□□□□□ -0.45
SYNGAP1-201ENST00000293748 HOXA2O43364 376 aa12.21□□□□□ -0.45
SYNGAP1-201ENST00000293748 MYBP10242 640 aa12.21□□□□□ -0.45
SYNGAP1-201ENST00000293748 TCN1P20061 433 aaPredicted RBP12.21□□□□□ -0.45
SYNGAP1-201ENST00000293748 NUDT2P50583 147 aa12.21□□□□□ -0.45
SYNGAP1-201ENST00000293748 NCOA4Q13772 614 aa12.21□□□□□ -0.45
SYNGAP1-201ENST00000293748 TJAP1Q5JTD0 557 aa12.21□□□□□ -0.45
SYNGAP1-201ENST00000293748 FEZF2Q8TBJ5 459 aa12.21□□□□□ -0.45
SYNGAP1-201ENST00000293748 MTMR9Q96QG7 549 aa12.21□□□□□ -0.45
SYNGAP1-201ENST00000293748 EFCAB1Q9HAE3 211 aa12.21□□□□□ -0.45
SYNGAP1-201ENST00000293748 ZNF556Q9HAH1 456 aa12.21□□□□□ -0.45
SYNGAP1-201ENST00000293748 SYBUQ9NX95 663 aa12.21□□□□□ -0.45
SYNGAP1-201ENST00000293748 C15orf41Q9Y2V0 281 aa12.21□□□□□ -0.45
SYNGAP1-201ENST00000293748 GLRA3O75311 464 aa12.21□□□□□ -0.45
SYNGAP1-201ENST00000293748 COL6A1P12109 1028 aa12.21□□□□□ -0.45
SYNGAP1-201ENST00000293748 OVGP1Q12889 678 aa12.21□□□□□ -0.45
SYNGAP1-201ENST00000293748 PRPF38BQ5VTL8 546 aaKnown RBP12.21□□□□□ -0.45
SYNGAP1-201ENST00000293748 GDF6Q6KF10 455 aaPredicted RBP12.21□□□□□ -0.45
SYNGAP1-201ENST00000293748 MFSD5Q6N075 450 aa12.21□□□□□ -0.45
SYNGAP1-201ENST00000293748 RBBP8Q99708 897 aa12.21□□□□□ -0.45
SYNGAP1-201ENST00000293748 MPP6Q9NZW5 540 aa12.21□□□□□ -0.45
SYNGAP1-201ENST00000293748 SLC24A2Q9UI40 661 aa12.21□□□□□ -0.45
SYNGAP1-201ENST00000293748 MGAMO43451 1857 aa12.21□□□□□ -0.46
SYNGAP1-201ENST00000293748 A0A0A6YYK5 440 aaPredicted RBP12.21□□□□□ -0.46
SYNGAP1-201ENST00000293748 KANSL1LA0AUZ9 987 aa12.21□□□□□ -0.46
SYNGAP1-201ENST00000293748 MTSS1O43312 755 aa12.21□□□□□ -0.46
SYNGAP1-201ENST00000293748 PSTPIP1O43586 416 aa12.21□□□□□ -0.46
SYNGAP1-201ENST00000293748 B4GALT4O60513 344 aa12.21□□□□□ -0.46
SYNGAP1-201ENST00000293748 FSBPO95073 299 aa12.21□□□□□ -0.46
SYNGAP1-201ENST00000293748 LYPLA2O95372 231 aa12.21□□□□□ -0.46
SYNGAP1-201ENST00000293748 ADORA2BP29275 332 aa12.21□□□□□ -0.46
SYNGAP1-201ENST00000293748 ZNF235Q14590 738 aa12.21□□□□□ -0.46
SYNGAP1-201ENST00000293748 EARS2Q5JPH6 523 aaKnown RBP12.21□□□□□ -0.46
SYNGAP1-201ENST00000293748 ZNF786Q8N393 782 aa12.21□□□□□ -0.46
SYNGAP1-201ENST00000293748 NDFIP2Q9NV92 336 aa12.21□□□□□ -0.46
SYNGAP1-201ENST00000293748 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.21□□□□□ -0.46
SYNGAP1-201ENST00000293748 IGSF9BQ9UPX0 1349 aa12.2□□□□□ -0.46
SYNGAP1-201ENST00000293748 BNIP3LO60238 219 aa12.2□□□□□ -0.46
SYNGAP1-201ENST00000293748 HOXD8P13378 290 aaPredicted RBP12.2□□□□□ -0.46
SYNGAP1-201ENST00000293748 PDK1Q15118 436 aa12.2□□□□□ -0.46
SYNGAP1-201ENST00000293748 LMBRD2Q68DH5 695 aaPredicted RBP12.2□□□□□ -0.46
SYNGAP1-201ENST00000293748 NOP9Q86U38 636 aaKnown RBP12.2□□□□□ -0.46
SYNGAP1-201ENST00000293748 SCN4BQ8IWT1 228 aa12.2□□□□□ -0.46
SYNGAP1-201ENST00000293748 FAM126BQ8IXS8 530 aa12.2□□□□□ -0.46
SYNGAP1-201ENST00000293748 TNIP2Q8NFZ5 429 aa12.2□□□□□ -0.46
SYNGAP1-201ENST00000293748 ZNF507Q8TCN5 953 aa12.2□□□□□ -0.46
SYNGAP1-201ENST00000293748 HAS1Q92839 578 aa12.2□□□□□ -0.46
SYNGAP1-201ENST00000293748 AGAP3Q96P47 875 aa12.2□□□□□ -0.46
SYNGAP1-201ENST00000293748 RIC8BQ9NVN3 520 aa12.2□□□□□ -0.46
SYNGAP1-201ENST00000293748 KIAA0355O15063 1070 aa12.2□□□□□ -0.46
SYNGAP1-201ENST00000293748 PSMA4P25789 261 aaKnown RBP12.2□□□□□ -0.46
SYNGAP1-201ENST00000293748 CYP2C18P33260 490 aa12.2□□□□□ -0.46
SYNGAP1-201ENST00000293748 CACNA2D1P54289 1103 aa12.2□□□□□ -0.46
SYNGAP1-201ENST00000293748 KCNK10P57789 538 aa12.2□□□□□ -0.46
SYNGAP1-201ENST00000293748 PACS2Q86VP3 889 aa12.2□□□□□ -0.46
SYNGAP1-201ENST00000293748 CCNJLQ8IV13 435 aa12.2□□□□□ -0.46
SYNGAP1-201ENST00000293748 ATXN2LQ8WWM7 1075 aaKnown RBP12.2□□□□□ -0.46
SYNGAP1-201ENST00000293748 CRYGNQ8WXF5 182 aa12.2□□□□□ -0.46
SYNGAP1-201ENST00000293748 LENG9Q96B70 501 aa12.2□□□□□ -0.46
SYNGAP1-201ENST00000293748 TUBGCP3Q96CW5 907 aa12.2□□□□□ -0.46
SYNGAP1-201ENST00000293748 FAR2Q96K12 515 aa12.2□□□□□ -0.46
SYNGAP1-201ENST00000293748 CATSPER2Q96P56 530 aa12.2□□□□□ -0.46
SYNGAP1-201ENST00000293748 KLHL4Q9C0H6 718 aa12.2□□□□□ -0.46
SYNGAP1-201ENST00000293748 SIK2Q9H0K1 926 aa12.2□□□□□ -0.46
SYNGAP1-201ENST00000293748 CDC42EP4Q9H3Q1 356 aaKnown RBP12.2□□□□□ -0.46
SYNGAP1-201ENST00000293748 PLEKHA5Q9HAU0 1116 aa12.2□□□□□ -0.46
SYNGAP1-201ENST00000293748 EXOSC4Q9NPD3 245 aaKnown RBP12.2□□□□□ -0.46
SYNGAP1-201ENST00000293748 IL23AQ9NPF7 189 aa12.2□□□□□ -0.46
SYNGAP1-201ENST00000293748 GIMAP4Q9NUV9 329 aa12.2□□□□□ -0.46
SYNGAP1-201ENST00000293748 DUSP10Q9Y6W6 482 aa12.2□□□□□ -0.46
SYNGAP1-201ENST00000293748 DHX15O43143 795 aaKnown RBP12.2□□□□□ -0.46
SYNGAP1-201ENST00000293748 TREHO43280 583 aa12.2□□□□□ -0.46
SYNGAP1-201ENST00000293748 AP5Z1O43299 807 aa12.2□□□□□ -0.46
SYNGAP1-201ENST00000293748 RASSF9O75901 435 aa12.2□□□□□ -0.46
SYNGAP1-201ENST00000293748 USP1O94782 785 aa12.2□□□□□ -0.46
SYNGAP1-201ENST00000293748 ATXN3P54252 364 aaPredicted RBP12.2□□□□□ -0.46
SYNGAP1-201ENST00000293748 PLA2G4FQ68DD2 849 aa12.2□□□□□ -0.46
SYNGAP1-201ENST00000293748 TTI2Q6NXR4 508 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms