RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 MBLAC1A4D2B0 266 aaPredicted RBP19.01■□□□□ 0.63
SHKBP1-201ENST00000291842 TRIM49D1C9J1S8 452 aa19.01■□□□□ 0.63
SHKBP1-201ENST00000291842 NEFHP12036 1026 aa19.01■□□□□ 0.63
SHKBP1-201ENST00000291842 ADIGQ0VDE8 80 aa19.01■□□□□ 0.63
SHKBP1-201ENST00000291842 BMPR2Q13873 1038 aa19.01■□□□□ 0.63
SHKBP1-201ENST00000291842 FAM110CQ1W6H9 321 aa19.01■□□□□ 0.63
SHKBP1-201ENST00000291842 SLC45A4Q5BKX6 768 aa19.01■□□□□ 0.63
SHKBP1-201ENST00000291842 ZNF449Q6P9G9 518 aa19.01■□□□□ 0.63
SHKBP1-201ENST00000291842 CDHR3Q6ZTQ4 885 aa19.01■□□□□ 0.63
SHKBP1-201ENST00000291842 OSTM1Q86WC4 334 aa19.01■□□□□ 0.63
SHKBP1-201ENST00000291842 CDKL3Q8IVW4 592 aaPredicted RBP19.01■□□□□ 0.63
SHKBP1-201ENST00000291842 DEFB106AQ8N104 65 aa19.01■□□□□ 0.63
SHKBP1-201ENST00000291842 VPS52Q8N1B4 723 aa19.01■□□□□ 0.63
SHKBP1-201ENST00000291842 RFWD2Q8NHY2 731 aa19.01■□□□□ 0.63
SHKBP1-201ENST00000291842 ALKBH8Q96BT7 664 aaKnown RBP19.01■□□□□ 0.63
SHKBP1-201ENST00000291842 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP19.01■□□□□ 0.63
SHKBP1-201ENST00000291842 GNEQ9Y223 722 aaKnown RBP19.01■□□□□ 0.63
SHKBP1-201ENST00000291842 RALGAPA2Q2PPJ7 1873 aa19.01■□□□□ 0.63
SHKBP1-201ENST00000291842 SLC15A5A6NIM6 579 aa19.01■□□□□ 0.63
SHKBP1-201ENST00000291842 BEST1O76090 585 aa19.01■□□□□ 0.63
SHKBP1-201ENST00000291842 CD4P01730 458 aa19.01■□□□□ 0.63
SHKBP1-201ENST00000291842 MYL3P08590 195 aa19.01■□□□□ 0.63
SHKBP1-201ENST00000291842 TAF6P49848 677 aa19.01■□□□□ 0.63
SHKBP1-201ENST00000291842 CCDC15Q0P6D6 951 aa19.01■□□□□ 0.63
SHKBP1-201ENST00000291842 UBXN11Q5T124 520 aa19.01■□□□□ 0.63
SHKBP1-201ENST00000291842 SWT1Q5T5J6 900 aaKnown RBP19.01■□□□□ 0.63
SHKBP1-201ENST00000291842 NCBP2-AS2Q69YL0 99 aa19.01■□□□□ 0.63
SHKBP1-201ENST00000291842 TRMT10BQ6PF06 316 aaKnown RBP19.01■□□□□ 0.63
SHKBP1-201ENST00000291842 UNC5AQ6ZN44 842 aa19.01■□□□□ 0.63
SHKBP1-201ENST00000291842 DENND5BQ6ZUT9 1274 aa19.01■□□□□ 0.63
SHKBP1-201ENST00000291842 SH2D5Q6ZV89 423 aa19.01■□□□□ 0.63
SHKBP1-201ENST00000291842 ZNF534Q76KX8 674 aa19.01■□□□□ 0.63
SHKBP1-201ENST00000291842 PIGZQ86VD9 579 aa19.01■□□□□ 0.63
SHKBP1-201ENST00000291842 SLC26A11Q86WA9 606 aa19.01■□□□□ 0.63
SHKBP1-201ENST00000291842 ADGRF2Q8IZF7 708 aa19.01■□□□□ 0.63
SHKBP1-201ENST00000291842 PARK7Q99497 189 aaKnown RBP19.01■□□□□ 0.63
SHKBP1-201ENST00000291842 LGMNQ99538 433 aa19.01■□□□□ 0.63
SHKBP1-201ENST00000291842 CEP41Q9BYV8 373 aa19.01■□□□□ 0.63
SHKBP1-201ENST00000291842 CYLDQ9NQC7 956 aa19.01■□□□□ 0.63
SHKBP1-201ENST00000291842 DTLQ9NZJ0 730 aa19.01■□□□□ 0.63
SHKBP1-201ENST00000291842 NUMBLQ9Y6R0 609 aa19.01■□□□□ 0.63
SHKBP1-201ENST00000291842 CCNB1P14635 433 aa19■□□□□ 0.63
SHKBP1-201ENST00000291842 NDUFV1P49821 464 aa19■□□□□ 0.63
SHKBP1-201ENST00000291842 CCL14Q16627 93 aa19■□□□□ 0.63
SHKBP1-201ENST00000291842 DCAF6Q58WW2 860 aa19■□□□□ 0.63
SHKBP1-201ENST00000291842 APOPT1Q96IL0 206 aa19■□□□□ 0.63
SHKBP1-201ENST00000291842 EPB41L3Q9Y2J2 1087 aaPredicted RBP19■□□□□ 0.63
SHKBP1-201ENST00000291842 IPPQ9Y573 584 aa19■□□□□ 0.63
SHKBP1-201ENST00000291842 HUS1O60921 280 aa19■□□□□ 0.63
SHKBP1-201ENST00000291842 CBX6O95503 412 aa19■□□□□ 0.63
SHKBP1-201ENST00000291842 BGNP21810 368 aa19■□□□□ 0.63
SHKBP1-201ENST00000291842 ALDH3A1P30838 453 aa19■□□□□ 0.63
SHKBP1-201ENST00000291842 SULT1E1P49888 294 aa19■□□□□ 0.63
SHKBP1-201ENST00000291842 NEK3P51956 506 aa19■□□□□ 0.63
SHKBP1-201ENST00000291842 LILRA4P59901 499 aa19■□□□□ 0.63
SHKBP1-201ENST00000291842 FYB2Q5VWT5 728 aa19■□□□□ 0.63
SHKBP1-201ENST00000291842 ZFP42Q96MM3 310 aa19■□□□□ 0.63
SHKBP1-201ENST00000291842 ZNF560Q96MR9 790 aa19■□□□□ 0.63
SHKBP1-201ENST00000291842 VPS11Q9H270 941 aa19■□□□□ 0.63
SHKBP1-201ENST00000291842 L3MBTL1Q9Y468 752 aa19■□□□□ 0.63
SHKBP1-201ENST00000291842 MYO18AQ92614 2054 aaKnown RBP18.99■□□□□ 0.63
SHKBP1-201ENST00000291842 A0A0G2JND7 137 aa18.99■□□□□ 0.63
SHKBP1-201ENST00000291842 SPAG6O75602 509 aa18.99■□□□□ 0.63
SHKBP1-201ENST00000291842 CSH1P0DML2 217 aa18.99■□□□□ 0.63
SHKBP1-201ENST00000291842 CSH2P0DML3 217 aa18.99■□□□□ 0.63
SHKBP1-201ENST00000291842 CDC42EP1Q00587 391 aa18.99■□□□□ 0.63
SHKBP1-201ENST00000291842 SMAD1Q15797 465 aaKnown RBP18.99■□□□□ 0.63
SHKBP1-201ENST00000291842 TTC39BQ5VTQ0 682 aaPredicted RBP18.99■□□□□ 0.63
SHKBP1-201ENST00000291842 HEATR6Q6AI08 1181 aaKnown RBP18.99■□□□□ 0.63
SHKBP1-201ENST00000291842 NLRP9Q7RTR0 991 aa18.99■□□□□ 0.63
SHKBP1-201ENST00000291842 B3GALNT2Q8NCR0 500 aa18.99■□□□□ 0.63
SHKBP1-201ENST00000291842 SLC13A1Q9BZW2 595 aa18.99■□□□□ 0.63
SHKBP1-201ENST00000291842 GDAP2Q9NXN4 497 aa18.99■□□□□ 0.63
SHKBP1-201ENST00000291842 IQCA1LA6NCM1 817 aa18.99■□□□□ 0.63
SHKBP1-201ENST00000291842 MEIS3P2A8K0S8 358 aa18.99■□□□□ 0.63
SHKBP1-201ENST00000291842 GCATO75600 419 aa18.99■□□□□ 0.63
SHKBP1-201ENST00000291842 ALADP13716 330 aa18.99■□□□□ 0.63
SHKBP1-201ENST00000291842 VAV1P15498 845 aa18.99■□□□□ 0.63
SHKBP1-201ENST00000291842 ETV4P43268 484 aa18.99■□□□□ 0.63
SHKBP1-201ENST00000291842 PSEN2P49810 448 aa18.99■□□□□ 0.63
SHKBP1-201ENST00000291842 CRADDP78560 199 aa18.99■□□□□ 0.63
SHKBP1-201ENST00000291842 SLC18A2Q05940 514 aa18.99■□□□□ 0.63
SHKBP1-201ENST00000291842 TAF1BQ53T94 588 aaPredicted RBP18.99■□□□□ 0.63
SHKBP1-201ENST00000291842 MTDHQ86UE4 582 aaKnown RBP18.99■□□□□ 0.63
SHKBP1-201ENST00000291842 SMG8Q8ND04 991 aaKnown RBP18.99■□□□□ 0.63
SHKBP1-201ENST00000291842 SIGLEC10Q96LC7 697 aa18.99■□□□□ 0.63
SHKBP1-201ENST00000291842 PNPLA8Q9NP80 782 aa18.99■□□□□ 0.63
SHKBP1-201ENST00000291842 KANSL3Q9P2N6 904 aa18.99■□□□□ 0.63
SHKBP1-201ENST00000291842 DCAF8L1A6NGE4 600 aa18.98■□□□□ 0.63
SHKBP1-201ENST00000291842 COPEO14579 308 aa18.98■□□□□ 0.63
SHKBP1-201ENST00000291842 DCTN3O75935 186 aa18.98■□□□□ 0.63
SHKBP1-201ENST00000291842 APOEP02649 317 aa18.98■□□□□ 0.63
SHKBP1-201ENST00000291842 MATKP42679 507 aa18.98■□□□□ 0.63
SHKBP1-201ENST00000291842 ADAM17P78536 824 aa18.98■□□□□ 0.63
SHKBP1-201ENST00000291842 NME3Q13232 169 aa18.98■□□□□ 0.63
SHKBP1-201ENST00000291842 SPRYD7Q5W111 196 aa18.98■□□□□ 0.63
SHKBP1-201ENST00000291842 TWF2Q6IBS0 349 aaKnown RBP18.98■□□□□ 0.63
SHKBP1-201ENST00000291842 UNC5BQ8IZJ1 945 aa18.98■□□□□ 0.63
SHKBP1-201ENST00000291842 QKIQ96PU8 341 aaKnown RBP eCLIP18.98■□□□□ 0.63
SHKBP1-201ENST00000291842 SRPK1Q96SB4 655 aaKnown RBP18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms