RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 UGT1A9O60656 530 aa20.8■□□□□ 0.92
VPS53-201ENST00000291074 LPXNO60711 386 aa20.8■□□□□ 0.92
VPS53-201ENST00000291074 NCBP2-AS2Q69YL0 99 aa20.8■□□□□ 0.92
VPS53-201ENST00000291074 VSIG1Q86XK7 387 aa20.8■□□□□ 0.92
VPS53-201ENST00000291074 UGT1A7Q9HAW7 530 aa20.8■□□□□ 0.92
VPS53-201ENST00000291074 UGT1A10Q9HAW8 530 aa20.8■□□□□ 0.92
VPS53-201ENST00000291074 UGT1A8Q9HAW9 530 aa20.8■□□□□ 0.92
VPS53-201ENST00000291074 SMYD2Q9NRG4 433 aa20.8■□□□□ 0.92
VPS53-201ENST00000291074 ZNF236Q9UL36 1845 aa20.8■□□□□ 0.92
VPS53-201ENST00000291074 CELF2O95319 508 aaKnown RBP20.79■□□□□ 0.92
VPS53-201ENST00000291074 ATP6V1G2O95670 118 aa20.79■□□□□ 0.92
VPS53-201ENST00000291074 KCNE1P15382 129 aa20.79■□□□□ 0.92
VPS53-201ENST00000291074 AXLP30530 894 aa20.79■□□□□ 0.92
VPS53-201ENST00000291074 RPL34P49207 117 aaKnown RBP20.79■□□□□ 0.92
VPS53-201ENST00000291074 LILRA4P59901 499 aa20.79■□□□□ 0.92
VPS53-201ENST00000291074 OVGP1Q12889 678 aa20.79■□□□□ 0.92
VPS53-201ENST00000291074 MORN1Q5T089 497 aa20.79■□□□□ 0.92
VPS53-201ENST00000291074 B3GALNT2Q8NCR0 500 aa20.79■□□□□ 0.92
VPS53-201ENST00000291074 C10orf82Q8WW14 230 aa20.79■□□□□ 0.92
VPS53-201ENST00000291074 NPHS2Q9NP85 383 aa20.79■□□□□ 0.92
VPS53-201ENST00000291074 DTLQ9NZJ0 730 aa20.79■□□□□ 0.92
VPS53-201ENST00000291074 BAIAP2L1Q9UHR4 511 aa20.79■□□□□ 0.92
VPS53-201ENST00000291074 MEIS3P2A8K0S8 358 aa20.79■□□□□ 0.92
VPS53-201ENST00000291074 HUS1O60921 280 aa20.79■□□□□ 0.92
VPS53-201ENST00000291074 KRT16P08779 473 aa20.79■□□□□ 0.92
VPS53-201ENST00000291074 SULT1E1P49888 294 aa20.79■□□□□ 0.92
VPS53-201ENST00000291074 MAP2K5Q13163 448 aa20.79■□□□□ 0.92
VPS53-201ENST00000291074 VPS52Q8N1B4 723 aa20.79■□□□□ 0.92
VPS53-201ENST00000291074 FAM111AQ96PZ2 611 aa20.79■□□□□ 0.92
VPS53-201ENST00000291074 USH1CQ9Y6N9 552 aa20.79■□□□□ 0.92
VPS53-201ENST00000291074 HAS3O00219 553 aa20.78■□□□□ 0.92
VPS53-201ENST00000291074 TM9SF1O15321 606 aa20.78■□□□□ 0.92
VPS53-201ENST00000291074 VAV1P15498 845 aa20.78■□□□□ 0.92
VPS53-201ENST00000291074 NDUFV1P49821 464 aa20.78■□□□□ 0.92
VPS53-201ENST00000291074 PCBP1Q15365 356 aaKnown RBP eCLIP20.78■□□□□ 0.92
VPS53-201ENST00000291074 SV2CQ496J9 727 aa20.78■□□□□ 0.92
VPS53-201ENST00000291074 XKR4Q5GH76 650 aa20.78■□□□□ 0.92
VPS53-201ENST00000291074 OTUD1Q5VV17 481 aaPredicted RBP20.78■□□□□ 0.92
VPS53-201ENST00000291074 QKIQ96PU8 341 aaKnown RBP eCLIP20.78■□□□□ 0.92
VPS53-201ENST00000291074 NCAPGQ9BPX3 1015 aa20.78■□□□□ 0.92
VPS53-201ENST00000291074 MAD1L1Q9Y6D9 718 aa20.78■□□□□ 0.92
VPS53-201ENST00000291074 CEP350Q5VT06 3117 aa20.78■□□□□ 0.92
VPS53-201ENST00000291074 TRIM49D1C9J1S8 452 aa20.78■□□□□ 0.92
VPS53-201ENST00000291074 CHUKO15111 745 aa20.78■□□□□ 0.92
VPS53-201ENST00000291074 SPAG6O75602 509 aa20.78■□□□□ 0.92
VPS53-201ENST00000291074 MAGEA6P43360 314 aa20.78■□□□□ 0.92
VPS53-201ENST00000291074 DCAF6Q58WW2 860 aa20.78■□□□□ 0.92
VPS53-201ENST00000291074 TWF2Q6IBS0 349 aaKnown RBP20.78■□□□□ 0.92
VPS53-201ENST00000291074 TRMT10BQ6PF06 316 aaKnown RBP20.78■□□□□ 0.92
VPS53-201ENST00000291074 UNC5AQ6ZN44 842 aa20.78■□□□□ 0.92
VPS53-201ENST00000291074 SH2D5Q6ZV89 423 aa20.78■□□□□ 0.92
VPS53-201ENST00000291074 ALKBH8Q96BT7 664 aaKnown RBP20.78■□□□□ 0.92
VPS53-201ENST00000291074 APOPT1Q96IL0 206 aa20.78■□□□□ 0.92
VPS53-201ENST00000291074 USP3Q9Y6I4 520 aa20.78■□□□□ 0.92
VPS53-201ENST00000291074 A8MUI8 341 aa20.77■□□□□ 0.92
VPS53-201ENST00000291074 ZNF487B1APH4 448 aa20.77■□□□□ 0.92
VPS53-201ENST00000291074 PTGESO14684 152 aa20.77■□□□□ 0.92
VPS53-201ENST00000291074 CYP2B6P20813 491 aa20.77■□□□□ 0.92
VPS53-201ENST00000291074 PNPLA4P41247 253 aa20.77■□□□□ 0.92
VPS53-201ENST00000291074 ACADSBP45954 432 aa20.77■□□□□ 0.92
VPS53-201ENST00000291074 NEK3P51956 506 aa20.77■□□□□ 0.92
VPS53-201ENST00000291074 BMPR2Q13873 1038 aa20.77■□□□□ 0.92
VPS53-201ENST00000291074 DENND5BQ6ZUT9 1274 aa20.77■□□□□ 0.92
VPS53-201ENST00000291074 ASRGL1Q7L266 308 aa20.77■□□□□ 0.92
VPS53-201ENST00000291074 LIMS2Q7Z4I7 341 aa20.77■□□□□ 0.92
VPS53-201ENST00000291074 SLC26A11Q86WA9 606 aa20.77■□□□□ 0.92
VPS53-201ENST00000291074 HSFY1Q96LI6 401 aa20.77■□□□□ 0.92
VPS53-201ENST00000291074 LGMNQ99538 433 aa20.77■□□□□ 0.92
VPS53-201ENST00000291074 PNPLA8Q9NP80 782 aa20.77■□□□□ 0.92
VPS53-201ENST00000291074 CYLDQ9NQC7 956 aa20.77■□□□□ 0.92
VPS53-201ENST00000291074 STK38LQ9Y2H1 464 aa20.77■□□□□ 0.92
VPS53-201ENST00000291074 XPO1O14980 1071 aaKnown RBP20.77■□□□□ 0.92
VPS53-201ENST00000291074 XPOTO43592 962 aaKnown RBP20.77■□□□□ 0.92
VPS53-201ENST00000291074 GCATO75600 419 aa20.77■□□□□ 0.92
VPS53-201ENST00000291074 MATKP42679 507 aa20.77■□□□□ 0.92
VPS53-201ENST00000291074 CCDC15Q0P6D6 951 aa20.77■□□□□ 0.92
VPS53-201ENST00000291074 PLEKHG4Q58EX7 1191 aa20.77■□□□□ 0.92
VPS53-201ENST00000291074 WSCD1Q658N2 575 aa20.77■□□□□ 0.92
VPS53-201ENST00000291074 CDHR3Q6ZTQ4 885 aa20.77■□□□□ 0.92
VPS53-201ENST00000291074 TTC17Q96AE7 1141 aa20.77■□□□□ 0.92
VPS53-201ENST00000291074 CEP41Q9BYV8 373 aa20.77■□□□□ 0.92
VPS53-201ENST00000291074 NOD2Q9HC29 1040 aa20.77■□□□□ 0.92
VPS53-201ENST00000291074 MFSD11O43934 449 aa20.76■□□□□ 0.91
VPS53-201ENST00000291074 CSH1P0DML2 217 aa20.76■□□□□ 0.91
VPS53-201ENST00000291074 CSH2P0DML3 217 aa20.76■□□□□ 0.91
VPS53-201ENST00000291074 ALADP13716 330 aa20.76■□□□□ 0.91
VPS53-201ENST00000291074 SCNN1AP37088 669 aa20.76■□□□□ 0.91
VPS53-201ENST00000291074 HEATR6Q6AI08 1181 aaKnown RBP20.76■□□□□ 0.91
VPS53-201ENST00000291074 PAQR9Q6ZVX9 377 aa20.76■□□□□ 0.91
VPS53-201ENST00000291074 LRRC6Q86X45 466 aa20.76■□□□□ 0.91
VPS53-201ENST00000291074 C2orf69Q8N8R5 385 aa20.76■□□□□ 0.91
VPS53-201ENST00000291074 TNIP3Q96KP6 325 aa20.76■□□□□ 0.91
VPS53-201ENST00000291074 SIGLEC10Q96LC7 697 aa20.76■□□□□ 0.91
VPS53-201ENST00000291074 LRRC37BQ96QE4 947 aa20.76■□□□□ 0.91
VPS53-201ENST00000291074 MANSC1Q9H8J5 431 aa20.76■□□□□ 0.91
VPS53-201ENST00000291074 DCTN4Q9UJW0 460 aa20.76■□□□□ 0.91
VPS53-201ENST00000291074 CCNB1P14635 433 aa20.76■□□□□ 0.91
VPS53-201ENST00000291074 TARSP26639 723 aaKnown RBP20.76■□□□□ 0.91
VPS53-201ENST00000291074 ETV4P43268 484 aa20.76■□□□□ 0.91
VPS53-201ENST00000291074 SLC18A2Q05940 514 aa20.76■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms