RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 ART4Q93070 314 aa17.14■□□□□ 0.34
USP4-201ENST00000265560 ZCWPW1Q9H0M4 648 aa17.14■□□□□ 0.34
USP4-201ENST00000265560 HOMER3Q9NSC5 361 aa17.14■□□□□ 0.34
USP4-201ENST00000265560 STAP1Q9ULZ2 295 aa17.14■□□□□ 0.34
USP4-201ENST00000265560 CDY1Q9Y6F8 540 aa17.14■□□□□ 0.34
USP4-201ENST00000265560 BANF1O75531 89 aa17.14■□□□□ 0.33
USP4-201ENST00000265560 SHBGP04278 402 aa17.14■□□□□ 0.33
USP4-201ENST00000265560 RAG1P15918 1043 aa17.14■□□□□ 0.33
USP4-201ENST00000265560 HSPA9P38646 679 aaKnown RBP17.14■□□□□ 0.33
USP4-201ENST00000265560 C4orf50Q6ZRC1 276 aa17.14■□□□□ 0.33
USP4-201ENST00000265560 IQCKQ8N0W5 287 aa17.14■□□□□ 0.33
USP4-201ENST00000265560 SH2D3CQ8N5H7 860 aa17.14■□□□□ 0.33
USP4-201ENST00000265560 RSAD2Q8WXG1 361 aa17.14■□□□□ 0.33
USP4-201ENST00000265560 SNF8Q96H20 258 aa17.14■□□□□ 0.33
USP4-201ENST00000265560 SLC2A13Q96QE2 648 aa17.14■□□□□ 0.33
USP4-201ENST00000265560 RUFY1Q96T51 708 aa17.14■□□□□ 0.33
USP4-201ENST00000265560 SIK2Q9H0K1 926 aa17.14■□□□□ 0.33
USP4-201ENST00000265560 OSER1Q9NX31 292 aa17.14■□□□□ 0.33
USP4-201ENST00000265560 APOC4-APOC2K7ER74 178 aa17.14■□□□□ 0.33
USP4-201ENST00000265560 MDM4O15151 490 aa17.14■□□□□ 0.33
USP4-201ENST00000265560 APOC2P02655 101 aa17.14■□□□□ 0.33
USP4-201ENST00000265560 CEP85LQ5SZL2 805 aa17.14■□□□□ 0.33
USP4-201ENST00000265560 FAXCQ5TGI0 409 aa17.14■□□□□ 0.33
USP4-201ENST00000265560 GIPC2Q8TF65 315 aa17.14■□□□□ 0.33
USP4-201ENST00000265560 CSPG4P5Q96PW8 444 aa17.14■□□□□ 0.33
USP4-201ENST00000265560 VN1R3Q9BXE9 311 aa17.14■□□□□ 0.33
USP4-201ENST00000265560 UBXN6Q9BZV1 441 aa17.14■□□□□ 0.33
USP4-201ENST00000265560 AAASQ9NRG9 546 aa17.14■□□□□ 0.33
USP4-201ENST00000265560 RNF40O75150 1001 aa17.13■□□□□ 0.33
USP4-201ENST00000265560 TBX18O95935 607 aa17.13■□□□□ 0.33
USP4-201ENST00000265560 DNAJB2P25686 324 aa17.13■□□□□ 0.33
USP4-201ENST00000265560 CAPN12Q6ZSI9 719 aa17.13■□□□□ 0.33
USP4-201ENST00000265560 TAC4Q86UU9 113 aa17.13■□□□□ 0.33
USP4-201ENST00000265560 CEP41Q9BYV8 373 aa17.13■□□□□ 0.33
USP4-201ENST00000265560 FEZ2Q9UHY8 353 aaPredicted RBP17.13■□□□□ 0.33
USP4-201ENST00000265560 FZD10Q9ULW2 581 aa17.13■□□□□ 0.33
USP4-201ENST00000265560 SF3B1O75533 1304 aaKnown RBP eCLIP17.13■□□□□ 0.338e-6■■■■■ 107
USP4-201ENST00000265560 TMEM189-UBE2V1I3L0A0 370 aa17.13■□□□□ 0.33
USP4-201ENST00000265560 APOL1O14791 398 aa17.13■□□□□ 0.33
USP4-201ENST00000265560 MCF2LO15068 1137 aa17.13■□□□□ 0.33
USP4-201ENST00000265560 FBXO21O94952 628 aa17.13■□□□□ 0.33
USP4-201ENST00000265560 ACSL3O95573 720 aa17.13■□□□□ 0.33
USP4-201ENST00000265560 PTPN7P35236 360 aa17.13■□□□□ 0.33
USP4-201ENST00000265560 RDXP35241 583 aaKnown RBP17.13■□□□□ 0.33
USP4-201ENST00000265560 DRG2P55039 364 aaKnown RBP17.13■□□□□ 0.33
USP4-201ENST00000265560 MAPRE1Q15691 268 aaKnown RBP17.13■□□□□ 0.33
USP4-201ENST00000265560 STRADAQ7RTN6 431 aa17.13■□□□□ 0.33
USP4-201ENST00000265560 CCDC89Q8N998 374 aa17.13■□□□□ 0.33
USP4-201ENST00000265560 SLCO2A1Q92959 643 aa17.13■□□□□ 0.33
USP4-201ENST00000265560 NT5C3BQ969T7 300 aa17.13■□□□□ 0.33
USP4-201ENST00000265560 ADAM7Q9H2U9 754 aa17.13■□□□□ 0.33
USP4-201ENST00000265560 WDR6Q9NNW5 1121 aaKnown RBP17.13■□□□□ 0.33
USP4-201ENST00000265560 MAGED2Q9UNF1 606 aaPredicted RBP17.13■□□□□ 0.33
USP4-201ENST00000265560 A0A1W2PQH9 124 aa17.12■□□□□ 0.33
USP4-201ENST00000265560 TNFRSF10BO14763 440 aa17.12■□□□□ 0.33
USP4-201ENST00000265560 VIPAS39Q9H9C1 493 aa17.12■□□□□ 0.33
USP4-201ENST00000265560 DGKIO75912 1065 aa17.12■□□□□ 0.33
USP4-201ENST00000265560 MOCS2O96007 188 aaPredicted RBP17.12■□□□□ 0.33
USP4-201ENST00000265560 RBL1P28749 1068 aa17.12■□□□□ 0.33
USP4-201ENST00000265560 PMS2P54278 862 aa17.12■□□□□ 0.33
USP4-201ENST00000265560 SLC29A2Q14542 456 aa17.12■□□□□ 0.33
USP4-201ENST00000265560 PDK2Q15119 407 aa17.12■□□□□ 0.33
USP4-201ENST00000265560 DPYSL2Q16555 572 aa17.12■□□□□ 0.33
USP4-201ENST00000265560 ZNF280DQ6N043 979 aa17.12■□□□□ 0.33
USP4-201ENST00000265560 SCD5Q86SK9 330 aa17.12■□□□□ 0.33
USP4-201ENST00000265560 LRRC43Q8N309 656 aa17.12■□□□□ 0.33
USP4-201ENST00000265560 TEKT4Q8WW24 435 aa17.12■□□□□ 0.33
USP4-201ENST00000265560 SEZ6LQ9BYH1 1024 aa17.12■□□□□ 0.33
USP4-201ENST00000265560 TKTL2Q9H0I9 626 aa17.12■□□□□ 0.33
USP4-201ENST00000265560 BCCIPQ9P287 314 aaKnown RBP eCLIP17.12■□□□□ 0.33
USP4-201ENST00000265560 XIRP2A4UGR9 3374 aa17.12■□□□□ 0.33
USP4-201ENST00000265560 TCRBV7S3A2A0A539 114 aa17.12■□□□□ 0.33
USP4-201ENST00000265560 KCNN4O15554 427 aa17.12■□□□□ 0.33
USP4-201ENST00000265560 VNN2O95498 520 aa17.12■□□□□ 0.33
USP4-201ENST00000265560 SRGAP2BP0DMP2 458 aa17.12■□□□□ 0.33
USP4-201ENST00000265560 EN2P19622 333 aaPredicted RBP17.12■□□□□ 0.33
USP4-201ENST00000265560 OR1D2P34982 312 aa17.12■□□□□ 0.33
USP4-201ENST00000265560 YWHAGP61981 247 aaKnown RBP eCLIP17.12■□□□□ 0.33
USP4-201ENST00000265560 GPS2Q13227 327 aa17.12■□□□□ 0.33
USP4-201ENST00000265560 NNTQ13423 1086 aa17.12■□□□□ 0.33
USP4-201ENST00000265560 ANKRD22Q5VYY1 191 aa17.12■□□□□ 0.33
USP4-201ENST00000265560 DCP1BQ8IZD4 617 aaKnown RBP17.12■□□□□ 0.33
USP4-201ENST00000265560 DQX1Q8TE96 717 aaKnown RBP17.12■□□□□ 0.33
USP4-201ENST00000265560 NKD2Q969F2 451 aaPredicted RBP17.12■□□□□ 0.33
USP4-201ENST00000265560 C9orf72Q96LT7 481 aa17.12■□□□□ 0.33
USP4-201ENST00000265560 RUNDC3BQ96NL0 473 aa17.12■□□□□ 0.33
USP4-201ENST00000265560 TTPALQ9BTX7 342 aa17.12■□□□□ 0.33
USP4-201ENST00000265560 MTRF1LQ9UGC7 380 aaKnown RBP17.12■□□□□ 0.33
USP4-201ENST00000265560 XPO7Q9UIA9 1087 aaKnown RBP17.12■□□□□ 0.33
USP4-201ENST00000265560 GTF3C5Q9Y5Q8 519 aaPredicted RBP17.12■□□□□ 0.33
USP4-201ENST00000265560 TANC1Q9C0D5 1861 aa17.12■□□□□ 0.33
USP4-201ENST00000265560 ZBBXA8MT70 800 aa17.11■□□□□ 0.33
USP4-201ENST00000265560 FGFR3P22607 806 aa17.11■□□□□ 0.33
USP4-201ENST00000265560 RPL22P35268 128 aaKnown RBP17.11■□□□□ 0.33
USP4-201ENST00000265560 ADRA1BP35368 520 aa17.11■□□□□ 0.33
USP4-201ENST00000265560 SCNN1AP37088 669 aa17.11■□□□□ 0.33
USP4-201ENST00000265560 SLCO1A2P46721 670 aa17.11■□□□□ 0.33
USP4-201ENST00000265560 TFDP2Q14188 446 aa17.11■□□□□ 0.33
USP4-201ENST00000265560 BTBD8Q5XKL5 378 aa17.11■□□□□ 0.33
USP4-201ENST00000265560 KIAA1841Q6NSI8 718 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms