RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 CCDC121Q6ZUS5 278 aa13.42□□□□□ -0.26
SPTLC1-201ENST00000262554 BZW1Q7L1Q6 419 aaKnown RBP13.42□□□□□ -0.26
SPTLC1-201ENST00000262554 GDAP1Q8TB36 358 aa13.42□□□□□ -0.26
SPTLC1-201ENST00000262554 FBF1Q8TES7 1133 aa13.42□□□□□ -0.26
SPTLC1-201ENST00000262554 CKAP2Q8WWK9 683 aa13.42□□□□□ -0.26
SPTLC1-201ENST00000262554 SGSM3Q96HU1 749 aa13.42□□□□□ -0.26
SPTLC1-201ENST00000262554 SMC6Q96SB8 1091 aa13.42□□□□□ -0.26
SPTLC1-201ENST00000262554 NPY6RQ99463 290 aa13.42□□□□□ -0.26
SPTLC1-201ENST00000262554 AGO3Q9H9G7 860 aaKnown RBP13.42□□□□□ -0.26
SPTLC1-201ENST00000262554 ETNK2Q9NVF9 386 aa13.42□□□□□ -0.26
SPTLC1-201ENST00000262554 CDH9Q9ULB4 789 aa13.42□□□□□ -0.26
SPTLC1-201ENST00000262554 SMG5Q9UPR3 1016 aaKnown RBP13.42□□□□□ -0.26
SPTLC1-201ENST00000262554 CHMP2BQ9UQN3 213 aa13.42□□□□□ -0.26
SPTLC1-201ENST00000262554 CASTOR2A6NHX0 329 aa13.41□□□□□ -0.26
SPTLC1-201ENST00000262554 PRPF4O43172 522 aaKnown RBP eCLIP13.41□□□□□ -0.26
SPTLC1-201ENST00000262554 ZNF623O75123 536 aa13.41□□□□□ -0.26
SPTLC1-201ENST00000262554 SPAG6O75602 509 aa13.41□□□□□ -0.26
SPTLC1-201ENST00000262554 AP1G2O75843 785 aa13.41□□□□□ -0.26
SPTLC1-201ENST00000262554 IGFBP6P24592 240 aaPredicted RBP13.41□□□□□ -0.26
SPTLC1-201ENST00000262554 PCSK1P29120 753 aa13.41□□□□□ -0.26
SPTLC1-201ENST00000262554 NDUFV1P49821 464 aa13.41□□□□□ -0.26
SPTLC1-201ENST00000262554 AFF1P51825 1210 aaKnown RBP13.41□□□□□ -0.26
SPTLC1-201ENST00000262554 GBE1Q04446 702 aa13.41□□□□□ -0.26
SPTLC1-201ENST00000262554 CBLBQ13191 982 aa13.41□□□□□ -0.26
SPTLC1-201ENST00000262554 PIGWQ7Z7B1 504 aa13.41□□□□□ -0.26
SPTLC1-201ENST00000262554 FAM35AQ86V20 835 aa13.41□□□□□ -0.26
SPTLC1-201ENST00000262554 PPM1EQ8WY54 764 aa13.41□□□□□ -0.26
SPTLC1-201ENST00000262554 NT5C3BQ969T7 300 aa13.41□□□□□ -0.26
SPTLC1-201ENST00000262554 MRRFQ96E11 262 aaKnown RBP13.41□□□□□ -0.26
SPTLC1-201ENST00000262554 QKIQ96PU8 341 aaKnown RBP eCLIP13.41□□□□□ -0.266e-7■■□□□ 12.6
SPTLC1-201ENST00000262554 SLC2A13Q96QE2 648 aa13.41□□□□□ -0.26
SPTLC1-201ENST00000262554 ZIC5Q96T25 663 aa13.41□□□□□ -0.26
SPTLC1-201ENST00000262554 WDR83Q9BRX9 315 aaKnown RBP13.41□□□□□ -0.26
SPTLC1-201ENST00000262554 MFRPQ9BY79 579 aa13.41□□□□□ -0.26
SPTLC1-201ENST00000262554 RASSF4Q9H2L5 321 aa13.41□□□□□ -0.26
SPTLC1-201ENST00000262554 POPDC2Q9HBU9 364 aa13.41□□□□□ -0.26
SPTLC1-201ENST00000262554 MLXIPLQ9NP71 852 aa13.41□□□□□ -0.26
SPTLC1-201ENST00000262554 PADI3Q9ULW8 664 aa13.41□□□□□ -0.26
SPTLC1-201ENST00000262554 PTCH2Q9Y6C5 1203 aa13.41□□□□□ -0.26
SPTLC1-201ENST00000262554 TSC2P49815 1807 aa13.41□□□□□ -0.26
SPTLC1-201ENST00000262554 HACD1B0YJ81 288 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 TCP11X1B4DZS4 312 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 H3BRJ5 948 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 M0QYT0 321 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 GCATO75600 419 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 GOT1P17174 413 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 CD52P31358 61 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 MSH2P43246 934 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 MAGEA6P43360 314 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 SLC18A1P54219 525 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 IL9RQ01113 521 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 DEUP1Q05D60 604 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 SLC10A2Q12908 348 aaPredicted RBP13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 MTM1Q13496 603 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 UPP1Q16831 310 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 NCBP2-AS2Q69YL0 99 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 HEATR6Q6AI08 1181 aaKnown RBP13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 ADGRD1Q6QNK2 874 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 KCNT2Q6UVM3 1135 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 VPS52Q8N1B4 723 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 PYROXD2Q8N2H3 581 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 RNF169Q8NCN4 708 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 C3orf58Q8NDZ4 430 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 CCDC110Q8TBZ0 833 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 MAGEB18Q96M61 343 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 CYTH2Q99418 400 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 PAFAH2Q99487 392 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 ELAC2Q9BQ52 826 aaKnown RBP13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 MAGEB5Q9BZ81 275 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 CNGB3Q9NQW8 809 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 TIMM13Q9Y5L4 95 aaPredicted RBP13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 USP3Q9Y6I4 520 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 TEX264Q9Y6I9 313 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 SYNJ2BP-COX16A0A087WUM0 186 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 MYBPHLA2RUH7 354 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 CAPN9O14815 690 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 APRTP07741 180 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 GHRP10912 638 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 ODC1P11926 461 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 AMPD1P23109 780 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 CCND3P30281 292 aaPredicted RBP13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 GBP2P32456 591 aaPredicted RBP13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 ITIH4Q14624 930 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 EFTUD2Q15029 972 aaKnown RBP eCLIP13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 SYCP2LQ5T4T6 812 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 BNIPLQ7Z465 357 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 METTL23Q86XA0 190 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 PCSK9Q8NBP7 692 aaKnown RBP13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 KLHDC9Q8NEP7 349 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 TFB1MQ8WVM0 346 aaKnown RBP13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 PGBD4Q96DM1 585 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 SMARCD1Q96GM5 515 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 PCED1BQ96HM7 432 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 TGS1Q96RS0 853 aaKnown RBP13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 SMOQ99835 787 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 DHRS4Q9BTZ2 278 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 ULBP1Q9BZM6 244 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 ETNK1Q9HBU6 452 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 DTLQ9NZJ0 730 aa13.4□□□□□ -0.26
SPTLC1-201ENST00000262554 COX16Q9P0S2 106 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms