RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 C7orf26Q96N11 449 aa14.86□□□□□ -0.03
SDC1-201ENST00000254351 TCHPQ9BT92 498 aa14.86□□□□□ -0.03
SDC1-201ENST00000254351 LRCH4O75427 683 aa14.85□□□□□ -0.03
SDC1-201ENST00000254351 TRMUO75648 421 aaKnown RBP14.85□□□□□ -0.03
SDC1-201ENST00000254351 BPGMP07738 259 aa14.85□□□□□ -0.03
SDC1-201ENST00000254351 KRT3P12035 628 aa14.85□□□□□ -0.03
SDC1-201ENST00000254351 ENO3P13929 434 aaPredicted RBP14.85□□□□□ -0.03
SDC1-201ENST00000254351 HDAC4P56524 1084 aa14.85□□□□□ -0.03
SDC1-201ENST00000254351 KRT81Q14533 505 aa14.85□□□□□ -0.03
SDC1-201ENST00000254351 MAVSQ7Z434 540 aa14.85□□□□□ -0.03
SDC1-201ENST00000254351 ADGRF2Q8IZF7 708 aa14.85□□□□□ -0.03
SDC1-201ENST00000254351 LARGE2Q8N3Y3 721 aa14.85□□□□□ -0.03
SDC1-201ENST00000254351 RBAKQ9NYW8 714 aaPredicted RBP14.85□□□□□ -0.03
SDC1-201ENST00000254351 HERC5Q9UII4 1024 aaKnown RBP14.85□□□□□ -0.03
SDC1-201ENST00000254351 CCPG1Q9ULG6 757 aa14.85□□□□□ -0.03
SDC1-201ENST00000254351 H3BNX3 289 aa14.85□□□□□ -0.03
SDC1-201ENST00000254351 PDGFRBP09619 1106 aa14.85□□□□□ -0.03
SDC1-201ENST00000254351 RAP1GAPP47736 663 aa14.85□□□□□ -0.03
SDC1-201ENST00000254351 MPP3Q13368 585 aa14.85□□□□□ -0.03
SDC1-201ENST00000254351 DCTN2Q13561 401 aaKnown RBP14.85□□□□□ -0.03
SDC1-201ENST00000254351 CDR2LQ86X02 465 aaPredicted RBP14.85□□□□□ -0.03
SDC1-201ENST00000254351 MAP4K3Q8IVH8 894 aa14.85□□□□□ -0.03
SDC1-201ENST00000254351 C10orf107Q8IVU9 208 aa14.85□□□□□ -0.03
SDC1-201ENST00000254351 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.85□□□□□ -0.03
SDC1-201ENST00000254351 TFAP2BQ92481 460 aa14.85□□□□□ -0.03
SDC1-201ENST00000254351 MFSD14AQ96MC6 490 aa14.85□□□□□ -0.03
SDC1-201ENST00000254351 WDR55Q9H6Y2 383 aaPredicted RBP14.85□□□□□ -0.03
SDC1-201ENST00000254351 PCDHGA4Q9Y5G9 962 aa14.85□□□□□ -0.03
SDC1-201ENST00000254351 LRRIQ4A6NIV6 560 aa14.84□□□□□ -0.03
SDC1-201ENST00000254351 COQ9O75208 318 aa14.84□□□□□ -0.03
SDC1-201ENST00000254351 KDELR1P24390 212 aa14.84□□□□□ -0.03
SDC1-201ENST00000254351 HOXA10P31260 410 aaPredicted RBP14.84□□□□□ -0.03
SDC1-201ENST00000254351 GTF2A2P52657 109 aa14.84□□□□□ -0.03
SDC1-201ENST00000254351 CDH6P55285 790 aa14.84□□□□□ -0.03
SDC1-201ENST00000254351 NAA20P61599 178 aa14.84□□□□□ -0.03
SDC1-201ENST00000254351 YWHAZP63104 245 aaKnown RBP14.84□□□□□ -0.03
SDC1-201ENST00000254351 PRAMEP78395 509 aa14.84□□□□□ -0.03
SDC1-201ENST00000254351 ROR1Q01973 937 aa14.84□□□□□ -0.03
SDC1-201ENST00000254351 ITGA9Q13797 1035 aa14.84□□□□□ -0.03
SDC1-201ENST00000254351 MAP3K21Q5TCX8 1036 aa14.84□□□□□ -0.03
SDC1-201ENST00000254351 ANKRD31Q8N7Z5 1873 aa14.84□□□□□ -0.03
SDC1-201ENST00000254351 CDRT15Q96T59 188 aa14.84□□□□□ -0.03
SDC1-201ENST00000254351 YIPF2Q9BWQ6 316 aa14.84□□□□□ -0.03
SDC1-201ENST00000254351 CEP41Q9BYV8 373 aa14.84□□□□□ -0.03
SDC1-201ENST00000254351 GABBR1Q9UBS5 961 aa14.84□□□□□ -0.03
SDC1-201ENST00000254351 SEPT9Q9UHD8 586 aaPredicted RBP14.84□□□□□ -0.03
SDC1-201ENST00000254351 TBC1D30Q9Y2I9 924 aa14.84□□□□□ -0.03
SDC1-201ENST00000254351 TEX264Q9Y6I9 313 aa14.84□□□□□ -0.03
SDC1-201ENST00000254351 CDK5RAP2Q96SN8 1893 aa14.84□□□□□ -0.03
SDC1-201ENST00000254351 NDC80O14777 642 aa14.84□□□□□ -0.03
SDC1-201ENST00000254351 DHX15O43143 795 aaKnown RBP14.84□□□□□ -0.03
SDC1-201ENST00000254351 XPOTO43592 962 aaKnown RBP14.84□□□□□ -0.03
SDC1-201ENST00000254351 CCNE2O96020 404 aa14.84□□□□□ -0.03
SDC1-201ENST00000254351 SAT1P21673 171 aa14.84□□□□□ -0.03
SDC1-201ENST00000254351 ARRB2P32121 409 aa14.84□□□□□ -0.03
SDC1-201ENST00000254351 ETFBP38117 255 aa14.84□□□□□ -0.03
SDC1-201ENST00000254351 PSMC1P62191 440 aaKnown RBP14.84□□□□□ -0.03
SDC1-201ENST00000254351 GRM2Q14416 872 aa14.84□□□□□ -0.03
SDC1-201ENST00000254351 MTERF2Q49AM1 385 aa14.84□□□□□ -0.03
SDC1-201ENST00000254351 TMEM259Q4ZIN3 620 aa14.84□□□□□ -0.03
SDC1-201ENST00000254351 CCT7Q99832 543 aa14.84□□□□□ -0.03
SDC1-201ENST00000254351 PFDN4Q9NQP4 134 aa14.84□□□□□ -0.03
SDC1-201ENST00000254351 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.84□□□□□ -0.032e-6■■■□□ 14.8
SDC1-201ENST00000254351 TTLL3Q9Y4R7 772 aa14.84□□□□□ -0.03
SDC1-201ENST00000254351 ADCY6O43306 1168 aa14.83□□□□□ -0.03
SDC1-201ENST00000254351 SEC24DO94855 1032 aaPredicted RBP14.83□□□□□ -0.03
SDC1-201ENST00000254351 ENTPD1P49961 510 aa14.83□□□□□ -0.03
SDC1-201ENST00000254351 IDH3AP50213 366 aa14.83□□□□□ -0.03
SDC1-201ENST00000254351 FLOT2Q14254 428 aa14.83□□□□□ -0.03
SDC1-201ENST00000254351 PHF13Q86YI8 300 aaPredicted RBP14.83□□□□□ -0.03
SDC1-201ENST00000254351 C12orf56Q8IXR9 622 aa14.83□□□□□ -0.03
SDC1-201ENST00000254351 PQLC1Q8N2U9 271 aa14.83□□□□□ -0.03
SDC1-201ENST00000254351 FBXW8Q8N3Y1 598 aa14.83□□□□□ -0.03
SDC1-201ENST00000254351 TARS2Q9BW92 718 aaKnown RBP14.83□□□□□ -0.03
SDC1-201ENST00000254351 SENP6Q9GZR1 1112 aaPredicted RBP14.83□□□□□ -0.03
SDC1-201ENST00000254351 THAP1Q9NVV9 213 aa14.83□□□□□ -0.03
SDC1-201ENST00000254351 AGO2Q9UKV8 859 aaKnown RBP14.83□□□□□ -0.03
SDC1-201ENST00000254351 HMX2A2RU54 273 aa14.83□□□□□ -0.04
SDC1-201ENST00000254351 ZBTB14O43829 449 aa14.83□□□□□ -0.04
SDC1-201ENST00000254351 RBL1P28749 1068 aa14.83□□□□□ -0.04
SDC1-201ENST00000254351 CCR10P46092 362 aa14.83□□□□□ -0.04
SDC1-201ENST00000254351 SERPINB8P50452 374 aa14.83□□□□□ -0.04
SDC1-201ENST00000254351 C1QBPQ07021 282 aaKnown RBP14.83□□□□□ -0.04
SDC1-201ENST00000254351 SNAPC2Q13487 334 aa14.83□□□□□ -0.04
SDC1-201ENST00000254351 TKFCQ3LXA3 575 aa14.83□□□□□ -0.04
SDC1-201ENST00000254351 SLC44A4Q53GD3 710 aa14.83□□□□□ -0.04
SDC1-201ENST00000254351 CC2D2BQ6DHV5 1058 aa14.83□□□□□ -0.04
SDC1-201ENST00000254351 NXNQ6DKJ4 435 aa14.83□□□□□ -0.04
SDC1-201ENST00000254351 KYAT3Q6YP21 454 aaKnown RBP14.83□□□□□ -0.04
SDC1-201ENST00000254351 ANKRD23Q86SG2 305 aa14.83□□□□□ -0.04
SDC1-201ENST00000254351 CDAN1Q8IWY9 1227 aa14.83□□□□□ -0.04
SDC1-201ENST00000254351 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.83□□□□□ -0.04
SDC1-201ENST00000254351 LENG8Q96PV6 779 aaPredicted RBP14.83□□□□□ -0.04
SDC1-201ENST00000254351 UNKQ9C0B0 810 aaKnown RBP14.83□□□□□ -0.04
SDC1-201ENST00000254351 PDGFDQ9GZP0 370 aaPredicted RBP14.83□□□□□ -0.04
SDC1-201ENST00000254351 ARMC7Q9H6L4 198 aa14.83□□□□□ -0.04
SDC1-201ENST00000254351 SIRPGQ9P1W8 387 aa14.83□□□□□ -0.04
SDC1-201ENST00000254351 SF3B1O75533 1304 aaKnown RBP eCLIP14.83□□□□□ -0.04
SDC1-201ENST00000254351 XRCC1P18887 633 aaPredicted RBP14.83□□□□□ -0.04
SDC1-201ENST00000254351 OSBPP22059 807 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms