RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 FCGR1AP12314 374 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 PRG2P13727 222 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 CREB1P16220 341 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 TFEBP19484 476 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 SMARCA1P28370 1054 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 HOXD3P31249 432 aaPredicted RBP0.7□□□□□ -2.3
VPS35-212ENST00000640313 PCYT1AP49585 367 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 DGKEP52429 567 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 SLC16A1P53985 500 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 DSC1Q08554 894 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 MFSD13AQ14CX5 517 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 SMTNL2Q2TAL5 461 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 H1FNTQ75WM6 255 aaPredicted RBP0.7□□□□□ -2.3
VPS35-212ENST00000640313 STRA8Q7Z7C7 330 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 TTC7BQ86TV6 843 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 HOMER1Q86YM7 354 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 DHX37Q8IY37 1157 aaKnown RBP0.7□□□□□ -2.3
VPS35-212ENST00000640313 CLIP4Q8N3C7 705 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 AFAP1L2Q8N4X5 818 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 PPM1NQ8N819 430 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 TMEM174Q8WUU8 243 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 LEO1Q8WVC0 666 aaPredicted RBP0.7□□□□□ -2.3
VPS35-212ENST00000640313 APPBP2Q92624 585 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 INPP5DQ92835 1189 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 ZNF524Q96C55 264 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 RTP4Q96DX8 246 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 MRFAP1L1Q96HT8 127 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 URB1-AS1Q96HZ7 61 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 FCRL5Q96RD9 977 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 WDR83Q9BRX9 315 aaKnown RBP0.7□□□□□ -2.3
VPS35-212ENST00000640313 C17orf80Q9BSJ5 609 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 TRMT61BQ9BVS5 477 aaKnown RBP0.7□□□□□ -2.3
VPS35-212ENST00000640313 C1orf43Q9BWL3 253 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 NUAK2Q9H093 628 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 WDCPQ9H6R7 721 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 CXorf36Q9H7Y0 433 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 VTA1Q9NP79 307 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 SLAMF7Q9NQ25 335 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 TRIM36Q9NQ86 728 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 FANCLQ9NW38 375 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 C14orf119Q9NWQ9 140 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 LPAR3Q9UBY5 353 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 FZD4Q9ULV1 537 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 MAPRE3Q9UPY8 281 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 APOBEC2Q9Y235 224 aaKnown RBP0.7□□□□□ -2.3
VPS35-212ENST00000640313 MRPS17Q9Y2R5 130 aaKnown RBP0.7□□□□□ -2.3
VPS35-212ENST00000640313 INSL5Q9Y5Q6 135 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 SNX14Q9Y5W7 946 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 CFAP20Q9Y6A4 193 aaKnown RBP0.7□□□□□ -2.3
VPS35-212ENST00000640313 SIRT4Q9Y6E7 314 aaPredicted RBP0.7□□□□□ -2.3
VPS35-212ENST00000640313 CACNA1FO60840 1977 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 MUC19Q7Z5P9 8384 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 PLSCR5A0PG75 271 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 GAGE12JA6NER3 117 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 TRIM75PA6NK02 468 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 INAFM1C9JVW0 142 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 K7ESF4 209 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 SPRY3O43610 288 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 ZNF500O60304 480 aaPredicted RBP0.69□□□□□ -2.3
VPS35-212ENST00000640313 PDE8AO60658 829 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 UGDHO60701 494 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 ZG16O60844 167 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 IGSF3O75054 1194 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 NDUFS2O75306 463 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 CDC45O75419 566 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 PRSS2P07478 247 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 CPA1P15085 419 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 ZNF10P21506 573 aaPredicted RBP0.69□□□□□ -2.3
VPS35-212ENST00000640313 KCNA3P22001 575 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 KRT9P35527 623 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 CSRP3P50461 194 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 RASSF2P50749 326 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 CLCN5P51795 746 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 BCAT1P54687 386 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 ERVK-21P61565 698 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 ABATP80404 500 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 SATB1Q01826 763 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 ACSM2AQ08AH3 577 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 TRAF2Q12933 501 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 KPNB1Q14974 876 aaKnown RBP0.69□□□□□ -2.3
VPS35-212ENST00000640313 KRT72Q14CN4 511 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 MLC1Q15049 377 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 DLGAP5Q15398 846 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 C3orf36Q3SXR2 165 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 AASDHQ4L235 1098 aaPredicted RBP0.69□□□□□ -2.3
VPS35-212ENST00000640313 ASPHD1Q5U4P2 390 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 EMC10Q5UCC4 262 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 SDE2Q6IQ49 451 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 KRTAP5-7Q6L8G8 165 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 GIMAP6Q6P9H5 292 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 RBM44Q6ZP01 1051 aaKnown RBP0.69□□□□□ -2.3
VPS35-212ENST00000640313 LHFPL2Q6ZUX7 228 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 CREB3L2Q70SY1 520 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 DDX46Q7L014 1031 aaKnown RBP0.69□□□□□ -2.3
VPS35-212ENST00000640313 ZNF771Q7L3S4 317 aaPredicted RBP0.69□□□□□ -2.3
VPS35-212ENST00000640313 CPA6Q8N4T0 437 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 LMNTD1Q8N9Z9 388 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 C3orf20Q8ND61 904 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 MAPK1IP1LQ8NDC0 245 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 TNPO1Q92973 898 aaKnown RBP0.69□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms