RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 PCDHA2Q9Y5H9 948 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 PXDNLA1KZ92 1463 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 WTIPA6NIX2 430 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-218ENST00000640036 TMX2-CTNND1H3BSU7 103 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 GSTA4O15217 222 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 PIM1P11309 404 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-218ENST00000640036 NMT1P30419 496 aaKnown RBP5.19□□□□□ -1.58
SCN1A-218ENST00000640036 HADHAP40939 763 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 ATP2C1P98194 919 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-218ENST00000640036 ATP13A4Q4VNC1 1196 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 KRT78Q8N1N4 520 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 USP6NLQ92738 828 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 KLHL5Q96PQ7 755 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 RABEP2Q9H5N1 569 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 RSPH14Q9UHP6 348 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 CDH9Q9ULB4 789 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 PCDHA11Q9Y5I1 949 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 AKAP11Q9UKA4 1901 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 EP300Q09472 2414 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-218ENST00000640036 NFICP08651 508 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 KRT4P19013 534 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 CAPRIN1Q14444 709 aaKnown RBP5.19□□□□□ -1.58
SCN1A-218ENST00000640036 GRM3Q14832 879 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 SLMAPQ14BN4 828 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 MPPE1Q53F39 396 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 TPGS2Q68CL5 300 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 VSTM1Q6UX27 236 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 ZPBP2Q6X784 338 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 C11orf57Q6ZUT1 292 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-218ENST00000640036 CELF5Q8N6W0 485 aaKnown RBP5.19□□□□□ -1.58
SCN1A-218ENST00000640036 FBXL18Q96ME1 805 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 ZMYND12Q9H0C1 365 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 RANBP17Q9H2T7 1088 aaKnown RBP5.19□□□□□ -1.58
SCN1A-218ENST00000640036 PRDM16Q9HAZ2 1276 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 ABCC13Q9NSE7 274 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 SPASTQ9UBP0 616 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 USP27XA6NNY8 438 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 ARP10275 920 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 CHRM3P20309 590 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 MAGEA10P43363 369 aaPredicted RBP5.18□□□□□ -1.58
SCN1A-218ENST00000640036 GJA8P48165 433 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 TKTL1P51854 596 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 FANCCQ00597 558 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 OCRLQ01968 901 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 RPL6Q02878 288 aaKnown RBP5.18□□□□□ -1.58
SCN1A-218ENST00000640036 PLEKHG6Q3KR16 790 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 GDF6Q6KF10 455 aaPredicted RBP5.18□□□□□ -1.58
SCN1A-218ENST00000640036 GJD3Q8N144 294 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 OR9Q1Q8NGQ5 310 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 BPIFB1Q8TDL5 484 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 ZDHHC6Q9H6R6 413 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 NHEJ1Q9H9Q4 299 aaPredicted RBP5.18□□□□□ -1.58
SCN1A-218ENST00000640036 TMEM8AQ9HCN3 771 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 KIAA1468Q9P260 1216 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 SLIT2O94813 1529 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 H0YGN5 161 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 SERPINF2P08697 491 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 ENO2P09104 434 aaPredicted RBP5.18□□□□□ -1.58
SCN1A-218ENST00000640036 ARHGDIAP52565 204 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 KCNA1Q09470 495 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 ITPRIPL2Q3MIP1 535 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 RAET1GQ6H3X3 334 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 CAPN12Q6ZSI9 719 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 SNX31Q8N9S9 440 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 UBA3Q8TBC4 463 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 HCAR2Q8TDS4 363 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 LPPQ93052 612 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 TSPAN17Q96FV3 270 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 NR1H4Q96RI1 486 aaPredicted RBP5.18□□□□□ -1.58
SCN1A-218ENST00000640036 USP28Q96RU2 1077 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 MRPS26Q9BYN8 205 aaKnown RBP5.18□□□□□ -1.58
SCN1A-218ENST00000640036 SLC27A5Q9Y2P5 690 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 BIRC5O15392 142 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 CRTAMO95727 393 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 BNC1Q01954 994 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 POU5F1BQ06416 359 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 ANKRD20A3Q5VUR7 823 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 FAM76AQ8TAV0 307 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 GRIN3AQ8TCU5 1115 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 WFIKKN2Q8TEU8 576 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 SNX21Q969T3 373 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 C19orf60Q96EN9 201 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 BTBD1Q9H0C5 482 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 ATP13A3Q9H7F0 1226 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 GDF3Q9NR23 364 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 WBP1LQ9NX94 342 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 IGSF9Q9P2J2 1179 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 PDXKO00764 312 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 GRM6O15303 877 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 PRNPP04156 253 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 MPOP05164 745 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 COX7A2P14406 83 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 PIGHQ14442 188 aaPredicted RBP5.18□□□□□ -1.58
SCN1A-218ENST00000640036 C3orf67Q6ZVT6 689 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 KLHL7Q8IXQ5 586 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 FAM71BQ8TC56 605 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 TADA1Q96BN2 335 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 MTMR12Q9C0I1 747 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 OSBPL2Q9H1P3 480 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 GTSE1Q9NYZ3 720 aa5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms