RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 ACSF2Q96CM8 615 aaPredicted RBP20.63■□□□□ 0.89
UPF3A-211ENST00000618700 ASB16Q96NS5 453 aa20.63■□□□□ 0.89
UPF3A-211ENST00000618700 TRPV4Q9HBA0 871 aa20.63■□□□□ 0.89
UPF3A-211ENST00000618700 TMEM59LQ9UK28 342 aa20.63■□□□□ 0.89
UPF3A-211ENST00000618700 NR2E1Q9Y466 385 aa20.63■□□□□ 0.89
UPF3A-211ENST00000618700 PRAMEF12O95522 483 aa20.62■□□□□ 0.89
UPF3A-211ENST00000618700 TBX18O95935 607 aa20.62■□□□□ 0.89
UPF3A-211ENST00000618700 MYBL1P10243 752 aa20.62■□□□□ 0.89
UPF3A-211ENST00000618700 FCARP24071 287 aa20.62■□□□□ 0.89
UPF3A-211ENST00000618700 SLC7A9P82251 487 aa20.62■□□□□ 0.89
UPF3A-211ENST00000618700 FAM78AQ5JUQ0 283 aa20.62■□□□□ 0.89
UPF3A-211ENST00000618700 RAD9BQ6WBX8 426 aa20.62■□□□□ 0.89
UPF3A-211ENST00000618700 ARCQ7LC44 396 aa20.62■□□□□ 0.89
UPF3A-211ENST00000618700 CYP2S1Q96SQ9 504 aa20.62■□□□□ 0.89
UPF3A-211ENST00000618700 METTL5Q9NRN9 209 aaKnown RBP20.62■□□□□ 0.89
UPF3A-211ENST00000618700 OLA1Q9NTK5 396 aaKnown RBP20.62■□□□□ 0.89
UPF3A-211ENST00000618700 PRKAG3Q9UGI9 489 aa20.62■□□□□ 0.89
UPF3A-211ENST00000618700 HELZP42694 1942 aaKnown RBP20.61■□□□□ 0.89
UPF3A-211ENST00000618700 EIF3CLB5ME19 914 aaKnown RBP20.61■□□□□ 0.89
UPF3A-211ENST00000618700 LOC730098B7Z3J9 87 aa20.61■□□□□ 0.89
UPF3A-211ENST00000618700 GRAP2O75791 330 aa20.61■□□□□ 0.89
UPF3A-211ENST00000618700 CKMP06732 381 aa20.61■□□□□ 0.89
UPF3A-211ENST00000618700 BMP1P13497 986 aa20.61■□□□□ 0.89
UPF3A-211ENST00000618700 NCAM1P13591 858 aa20.61■□□□□ 0.89
UPF3A-211ENST00000618700 HDCP19113 662 aa20.61■□□□□ 0.89
UPF3A-211ENST00000618700 SP100P23497 879 aaPredicted RBP20.61■□□□□ 0.89
UPF3A-211ENST00000618700 CYLC1P35663 651 aaPredicted RBP20.61■□□□□ 0.89
UPF3A-211ENST00000618700 AVPR1AP37288 418 aa20.61■□□□□ 0.89
UPF3A-211ENST00000618700 MTF1Q14872 753 aa20.61■□□□□ 0.89
UPF3A-211ENST00000618700 C10orf120Q5SQS8 335 aa20.61■□□□□ 0.89
UPF3A-211ENST00000618700 PPP1R15BQ5SWA1 713 aa20.61■□□□□ 0.89
UPF3A-211ENST00000618700 PLEKHA7Q6IQ23 1121 aa20.61■□□□□ 0.89
UPF3A-211ENST00000618700 TRNP1Q6NT89 227 aa20.61■□□□□ 0.89
UPF3A-211ENST00000618700 DNAJC24Q6P3W2 148 aa20.61■□□□□ 0.89
UPF3A-211ENST00000618700 PHLDB2Q86SQ0 1253 aa20.61■□□□□ 0.89
UPF3A-211ENST00000618700 TADA2BQ86TJ2 420 aa20.61■□□□□ 0.89
UPF3A-211ENST00000618700 LRRC8AQ8IWT6 810 aa20.61■□□□□ 0.89
UPF3A-211ENST00000618700 ADHFE1Q8IWW8 467 aa20.61■□□□□ 0.89
UPF3A-211ENST00000618700 ZDHHC14Q8IZN3 488 aa20.61■□□□□ 0.89
UPF3A-211ENST00000618700 CCDC112Q8NEF3 446 aa20.61■□□□□ 0.89
UPF3A-211ENST00000618700 SMARCD2Q92925 531 aa20.61■□□□□ 0.89
UPF3A-211ENST00000618700 ZNF653Q96CK0 615 aa20.61■□□□□ 0.89
UPF3A-211ENST00000618700 RPGRIP1Q96KN7 1286 aa20.61■□□□□ 0.89
UPF3A-211ENST00000618700 ZFRQ96KR1 1074 aaKnown RBP20.61■□□□□ 0.89
UPF3A-211ENST00000618700 EIF3CQ99613 913 aaKnown RBP20.61■□□□□ 0.89
UPF3A-211ENST00000618700 COL25A1Q9BXS0 654 aaPredicted RBP20.61■□□□□ 0.89
UPF3A-211ENST00000618700 THAP2Q9H0W7 228 aa20.61■□□□□ 0.89
UPF3A-211ENST00000618700 NUDT5Q9UKK9 219 aa20.61■□□□□ 0.89
UPF3A-211ENST00000618700 ARHGAP26Q9UNA1 814 aa20.61■□□□□ 0.89
UPF3A-211ENST00000618700 NAALADL1Q9UQQ1 740 aa20.61■□□□□ 0.89
UPF3A-211ENST00000618700 TCF20Q9UGU0 1960 aaKnown RBP20.6■□□□□ 0.89
UPF3A-211ENST00000618700 ANKRD62A6NC57 917 aa20.6■□□□□ 0.89
UPF3A-211ENST00000618700 MDM4O15151 490 aa20.6■□□□□ 0.89
UPF3A-211ENST00000618700 NDUFA10O95299 355 aa20.6■□□□□ 0.89
UPF3A-211ENST00000618700 GJB6O95452 261 aa20.6■□□□□ 0.89
UPF3A-211ENST00000618700 ABCB4P21439 1286 aa20.6■□□□□ 0.89
UPF3A-211ENST00000618700 ATP5C1P36542 298 aaKnown RBP20.6■□□□□ 0.89
UPF3A-211ENST00000618700 FLT3P36888 993 aa20.6■□□□□ 0.89
UPF3A-211ENST00000618700 GALCP54803 685 aa20.6■□□□□ 0.89
UPF3A-211ENST00000618700 ZP2Q05996 745 aa20.6■□□□□ 0.89
UPF3A-211ENST00000618700 MAMLD1Q13495 774 aa20.6■□□□□ 0.89
UPF3A-211ENST00000618700 SYPL2Q5VXT5 272 aa20.6■□□□□ 0.89
UPF3A-211ENST00000618700 RSRC2Q7L4I2 434 aaKnown RBP20.6■□□□□ 0.89
UPF3A-211ENST00000618700 ARID3BQ8IVW6 561 aaPredicted RBP20.6■□□□□ 0.89
UPF3A-211ENST00000618700 DEFB106AQ8N104 65 aa20.6■□□□□ 0.89
UPF3A-211ENST00000618700 DQX1Q8TE96 717 aaKnown RBP20.6■□□□□ 0.89
UPF3A-211ENST00000618700 RNF139Q8WU17 664 aa20.6■□□□□ 0.89
UPF3A-211ENST00000618700 USP13Q92995 863 aaPredicted RBP20.6■□□□□ 0.89
UPF3A-211ENST00000618700 PACSIN1Q9BY11 444 aa20.6■□□□□ 0.89
UPF3A-211ENST00000618700 SMG9Q9H0W8 520 aaKnown RBP20.6■□□□□ 0.89
UPF3A-211ENST00000618700 SMOC2Q9H3U7 446 aa20.6■□□□□ 0.89
UPF3A-211ENST00000618700 TDP1Q9NUW8 608 aa20.6■□□□□ 0.89
UPF3A-211ENST00000618700 CNOT8Q9UFF9 292 aaKnown RBP20.6■□□□□ 0.89
UPF3A-211ENST00000618700 DNMT3LQ9UJW3 386 aa20.6■□□□□ 0.89
UPF3A-211ENST00000618700 CPQQ9Y646 472 aa20.6■□□□□ 0.89
UPF3A-211ENST00000618700 EPN1Q9Y6I3 576 aaPredicted RBP20.6■□□□□ 0.89
UPF3A-211ENST00000618700 SIGLEC16A6NMB1 481 aa20.59■□□□□ 0.89
UPF3A-211ENST00000618700 ANHXE9PGG2 379 aa20.59■□□□□ 0.89
UPF3A-211ENST00000618700 IGLV3-25P01717 112 aa20.59■□□□□ 0.89
UPF3A-211ENST00000618700 CYP1A2P05177 515 aa20.59■□□□□ 0.89
UPF3A-211ENST00000618700 MBL2P11226 248 aaPredicted RBP20.59■□□□□ 0.89
UPF3A-211ENST00000618700 KRT3P12035 628 aa20.59■□□□□ 0.89
UPF3A-211ENST00000618700 TCF3P15923 654 aa20.59■□□□□ 0.89
UPF3A-211ENST00000618700 MATKP42679 507 aa20.59■□□□□ 0.89
UPF3A-211ENST00000618700 ZXDBP98169 803 aa20.59■□□□□ 0.89
UPF3A-211ENST00000618700 USP4Q13107 963 aa20.59■□□□□ 0.89
UPF3A-211ENST00000618700 HTR4Q13639 388 aa20.59■□□□□ 0.89
UPF3A-211ENST00000618700 C10orf76Q5T2E6 689 aa20.59■□□□□ 0.89
UPF3A-211ENST00000618700 JOSD2Q8TAC2 188 aa20.59■□□□□ 0.89
UPF3A-211ENST00000618700 SELENOOQ9BVL4 669 aa20.59■□□□□ 0.89
UPF3A-211ENST00000618700 TMEM121BQ9BXQ6 578 aaPredicted RBP20.59■□□□□ 0.89
UPF3A-211ENST00000618700 KIF9Q9HAQ2 790 aa20.59■□□□□ 0.89
UPF3A-211ENST00000618700 PARVAQ9NVD7 372 aa20.59■□□□□ 0.89
UPF3A-211ENST00000618700 MARCH2Q9P0N8 246 aa20.59■□□□□ 0.89
UPF3A-211ENST00000618700 CCL26Q9Y258 94 aa20.59■□□□□ 0.89
UPF3A-211ENST00000618700 C2CD4BA6NLJ0 364 aa20.58■□□□□ 0.89
UPF3A-211ENST00000618700 CAPN9O14815 690 aa20.58■□□□□ 0.89
UPF3A-211ENST00000618700 H2AFZP0C0S5 128 aa20.58■□□□□ 0.89
UPF3A-211ENST00000618700 NOS2P35228 1153 aa20.58■□□□□ 0.89
UPF3A-211ENST00000618700 RNASE9P60153 205 aaKnown RBP20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms