RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 XPO1O14980 1071 aaKnown RBP13.02□□□□□ -0.32
LIG1-221ENST00000613670 GJB1P08034 283 aa13.02□□□□□ -0.32
LIG1-221ENST00000613670 GOLGA7BQ2TAP0 167 aa13.02□□□□□ -0.32
LIG1-221ENST00000613670 BOLA3Q53S33 107 aa13.02□□□□□ -0.32
LIG1-221ENST00000613670 SH3PXD2AQ5TCZ1 1133 aa13.02□□□□□ -0.32
LIG1-221ENST00000613670 SAMD7Q7Z3H4 446 aa13.02□□□□□ -0.32
LIG1-221ENST00000613670 ACOT1Q86TX2 421 aa13.02□□□□□ -0.32
LIG1-221ENST00000613670 RNF135Q8IUD6 432 aa13.02□□□□□ -0.32
LIG1-221ENST00000613670 OLIG1Q8TAK6 271 aa13.02□□□□□ -0.32
LIG1-221ENST00000613670 SLC35B2Q8TB61 432 aa13.02□□□□□ -0.32
LIG1-221ENST00000613670 PIWIL2Q8TC59 973 aaKnown RBP13.02□□□□□ -0.32
LIG1-221ENST00000613670 DCAKDQ8WVC6 231 aa13.02□□□□□ -0.32
LIG1-221ENST00000613670 SNRNP27Q8WVK2 155 aaKnown RBP13.02□□□□□ -0.32
LIG1-221ENST00000613670 SGF29Q96ES7 293 aa13.02□□□□□ -0.32
LIG1-221ENST00000613670 RNPEPQ9H4A4 650 aa13.02□□□□□ -0.32
LIG1-221ENST00000613670 SUDS3Q9H7L9 328 aaPredicted RBP13.02□□□□□ -0.32
LIG1-221ENST00000613670 ARHGAP28Q9P2N2 729 aa13.02□□□□□ -0.32
LIG1-221ENST00000613670 TELO2Q9Y4R8 837 aa13.02□□□□□ -0.32
LIG1-221ENST00000613670 KPNA7A9QM74 516 aa13.02□□□□□ -0.33
LIG1-221ENST00000613670 MICAL2O94851 1124 aa13.02□□□□□ -0.33
LIG1-221ENST00000613670 GLRBP48167 497 aa13.02□□□□□ -0.33
LIG1-221ENST00000613670 PRAMEP78395 509 aa13.02□□□□□ -0.33
LIG1-221ENST00000613670 RALGPS1Q5JS13 557 aa13.02□□□□□ -0.33
LIG1-221ENST00000613670 VWA5B1Q5TIE3 1220 aa13.02□□□□□ -0.33
LIG1-221ENST00000613670 ACAD11Q709F0 780 aa13.02□□□□□ -0.33
LIG1-221ENST00000613670 NET1Q7Z628 596 aaPredicted RBP13.02□□□□□ -0.33
LIG1-221ENST00000613670 OR6Y1Q8NGX8 325 aa13.02□□□□□ -0.33
LIG1-221ENST00000613670 SEPT1Q8WYJ6 367 aa13.02□□□□□ -0.33
LIG1-221ENST00000613670 MRIQ9BWK5 157 aa13.02□□□□□ -0.33
LIG1-221ENST00000613670 PORCNQ9H237 461 aa13.02□□□□□ -0.33
LIG1-221ENST00000613670 BFARQ9NZS9 450 aa13.02□□□□□ -0.33
LIG1-221ENST00000613670 SLC7A8Q9UHI5 535 aa13.02□□□□□ -0.33
LIG1-221ENST00000613670 NR2E3Q9Y5X4 410 aa13.02□□□□□ -0.33
LIG1-221ENST00000613670 USP12O75317 370 aa13.02□□□□□ -0.33
LIG1-221ENST00000613670 MLH1P40692 756 aa13.02□□□□□ -0.33
LIG1-221ENST00000613670 TGFB2P61812 414 aa13.02□□□□□ -0.33
LIG1-221ENST00000613670 OCRLQ01968 901 aa13.02□□□□□ -0.33
LIG1-221ENST00000613670 POU5F1BQ06416 359 aa13.02□□□□□ -0.33
LIG1-221ENST00000613670 PDCD2Q16342 344 aaPredicted RBP13.02□□□□□ -0.33
LIG1-221ENST00000613670 IL31Q6EBC2 164 aa13.02□□□□□ -0.33
LIG1-221ENST00000613670 TRMT10BQ6PF06 316 aaKnown RBP13.02□□□□□ -0.33
LIG1-221ENST00000613670 KDELC2Q7Z4H8 507 aa13.02□□□□□ -0.33
LIG1-221ENST00000613670 ARHGAP22Q7Z5H3 698 aa13.02□□□□□ -0.33
LIG1-221ENST00000613670 MPP4Q96JB8 637 aa13.02□□□□□ -0.33
LIG1-221ENST00000613670 ETNK2Q9NVF9 386 aa13.02□□□□□ -0.33
LIG1-221ENST00000613670 PNPOQ9NVS9 261 aa13.02□□□□□ -0.33
LIG1-221ENST00000613670 LNPEPQ9UIQ6 1025 aa13.02□□□□□ -0.33
LIG1-221ENST00000613670 PLLPQ9Y342 182 aa13.02□□□□□ -0.33
LIG1-221ENST00000613670 COMMD10Q9Y6G5 202 aa13.02□□□□□ -0.33
LIG1-221ENST00000613670 RARBP10826 455 aa13.01□□□□□ -0.33
LIG1-221ENST00000613670 ACO1P21399 889 aaKnown RBP13.01□□□□□ -0.33
LIG1-221ENST00000613670 SOX11P35716 441 aa13.01□□□□□ -0.33
LIG1-221ENST00000613670 PTGER2P43116 358 aa13.01□□□□□ -0.33
LIG1-221ENST00000613670 LAYNQ6UX15 382 aa13.01□□□□□ -0.33
LIG1-221ENST00000613670 NAT8LQ8N9F0 302 aa13.01□□□□□ -0.33
LIG1-221ENST00000613670 EME1Q96AY2 570 aa13.01□□□□□ -0.33
LIG1-221ENST00000613670 TMEM176AQ96HP8 235 aa13.01□□□□□ -0.33
LIG1-221ENST00000613670 FBXL18Q96ME1 805 aa13.01□□□□□ -0.33
LIG1-221ENST00000613670 TUBGCP5Q96RT8 1024 aa13.01□□□□□ -0.33
LIG1-221ENST00000613670 FRMD8P1Q9BZ68 369 aaPredicted RBP13.01□□□□□ -0.33
LIG1-221ENST00000613670 FAM49AQ9H0Q0 323 aaPredicted RBP13.01□□□□□ -0.33
LIG1-221ENST00000613670 PPM1HQ9ULR3 514 aa13.01□□□□□ -0.33
LIG1-221ENST00000613670 CXorf49A8MYA2 514 aaPredicted RBP13.01□□□□□ -0.33
LIG1-221ENST00000613670 PMM2O15305 246 aa13.01□□□□□ -0.33
LIG1-221ENST00000613670 GLRA3O75311 464 aa13.01□□□□□ -0.33
LIG1-221ENST00000613670 TM7SF2O76062 418 aa13.01□□□□□ -0.33
LIG1-221ENST00000613670 CLPTM1O96005 669 aa13.01□□□□□ -0.33
LIG1-221ENST00000613670 PKNOX1P55347 436 aa13.01□□□□□ -0.33
LIG1-221ENST00000613670 CAPSQ13938 189 aa13.01□□□□□ -0.33
LIG1-221ENST00000613670 FAM131BQ86XD5 332 aa13.01□□□□□ -0.33
LIG1-221ENST00000613670 TASP1Q9H6P5 420 aa13.01□□□□□ -0.33
LIG1-221ENST00000613670 C20orf96Q9NUD7 363 aaPredicted RBP13.01□□□□□ -0.33
LIG1-221ENST00000613670 FGFR1P11362 822 aa13.01□□□□□ -0.33
LIG1-221ENST00000613670 GCAP28676 217 aa13.01□□□□□ -0.33
LIG1-221ENST00000613670 SPDYE2Q495Y8 402 aa13.01□□□□□ -0.33
LIG1-221ENST00000613670 CDHR3Q6ZTQ4 885 aa13.01□□□□□ -0.33
LIG1-221ENST00000613670 DHDDSQ86SQ9 333 aa13.01□□□□□ -0.33
LIG1-221ENST00000613670 TREML1Q86YW5 311 aa13.01□□□□□ -0.33
LIG1-221ENST00000613670 TNS4Q8IZW8 715 aa13.01□□□□□ -0.33
LIG1-221ENST00000613670 GALNT15Q8N3T1 639 aa13.01□□□□□ -0.33
LIG1-221ENST00000613670 ZNF280CQ8ND82 737 aa13.01□□□□□ -0.33
LIG1-221ENST00000613670 SPATA33Q96N06 139 aa13.01□□□□□ -0.33
LIG1-221ENST00000613670 NT5C1AQ9BXI3 368 aa13.01□□□□□ -0.33
LIG1-221ENST00000613670 GCOM2Q9BZD3 368 aaPredicted RBP13.01□□□□□ -0.33
LIG1-221ENST00000613670 C2orf40Q9H1Z8 148 aa13.01□□□□□ -0.33
LIG1-221ENST00000613670 FAM96AQ9H5X1 160 aa13.01□□□□□ -0.33
LIG1-221ENST00000613670 LRRC4Q9HBW1 653 aa13.01□□□□□ -0.33
LIG1-221ENST00000613670 GOLGA8TH3BQL2 631 aa13□□□□□ -0.33
LIG1-221ENST00000613670 TRUB2O95900 331 aaKnown RBP13□□□□□ -0.33
LIG1-221ENST00000613670 ERBB2P04626 1255 aa13□□□□□ -0.33
LIG1-221ENST00000613670 CPA3P15088 417 aa13□□□□□ -0.33
LIG1-221ENST00000613670 CYP2F1P24903 491 aa13□□□□□ -0.33
LIG1-221ENST00000613670 MGAT1P26572 445 aa13□□□□□ -0.33
LIG1-221ENST00000613670 MRPS22P82650 360 aaKnown RBP13□□□□□ -0.33
LIG1-221ENST00000613670 USP4Q13107 963 aa13□□□□□ -0.33
LIG1-221ENST00000613670 KCNT2Q6UVM3 1135 aa13□□□□□ -0.33
LIG1-221ENST00000613670 HPS6Q86YV9 775 aa13□□□□□ -0.33
LIG1-221ENST00000613670 ENDOVQ8N8Q3 282 aaKnown RBP13□□□□□ -0.33
LIG1-221ENST00000613670 ANKLE1Q8NAG6 615 aa13□□□□□ -0.33
LIG1-221ENST00000613670 OPTNQ96CV9 577 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms