RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 WBP2Q969T9 261 aa17.31■□□□□ 0.36
CCDC28A-202ENST00000611852 POPDC2Q9HBU9 364 aa17.31■□□□□ 0.36
CCDC28A-202ENST00000611852 HEBP1Q9NRV9 189 aa17.31■□□□□ 0.36
CCDC28A-202ENST00000611852 SEPT11Q9NVA2 429 aaKnown RBP17.31■□□□□ 0.36
CCDC28A-202ENST00000611852 ASNSD1Q9NWL6 643 aa17.31■□□□□ 0.36
CCDC28A-202ENST00000611852 DUS2Q9NX74 493 aaKnown RBP17.31■□□□□ 0.36
CCDC28A-202ENST00000611852 WNT6Q9Y6F9 365 aa17.31■□□□□ 0.36
CCDC28A-202ENST00000611852 TICRRQ7Z2Z1 1910 aa17.3■□□□□ 0.36
CCDC28A-202ENST00000611852 KRBA1A5PL33 1030 aa17.3■□□□□ 0.36
CCDC28A-202ENST00000611852 SCAMP3O14828 347 aaKnown RBP17.3■□□□□ 0.36
CCDC28A-202ENST00000611852 GREM1O60565 184 aa17.3■□□□□ 0.36
CCDC28A-202ENST00000611852 GLI1P08151 1106 aa17.3■□□□□ 0.36
CCDC28A-202ENST00000611852 IRF1P10914 325 aa17.3■□□□□ 0.36
CCDC28A-202ENST00000611852 SKILP12757 684 aa17.3■□□□□ 0.36
CCDC28A-202ENST00000611852 NCAM1P13591 858 aa17.3■□□□□ 0.36
CCDC28A-202ENST00000611852 MMP8P22894 467 aa17.3■□□□□ 0.36
CCDC28A-202ENST00000611852 COG7P83436 770 aa17.3■□□□□ 0.36
CCDC28A-202ENST00000611852 SLC6A3Q01959 620 aa17.3■□□□□ 0.36
CCDC28A-202ENST00000611852 CENPCQ03188 943 aa17.3■□□□□ 0.36
CCDC28A-202ENST00000611852 GOLGA8FQ08AF8 430 aa17.3■□□□□ 0.36
CCDC28A-202ENST00000611852 GOLGA8DPQ0D2H9 430 aa17.3■□□□□ 0.36
CCDC28A-202ENST00000611852 KLHL30Q0D2K2 578 aa17.3■□□□□ 0.36
CCDC28A-202ENST00000611852 TRIM14Q14142 442 aa17.3■□□□□ 0.36
CCDC28A-202ENST00000611852 PDGFRLQ15198 375 aa17.3■□□□□ 0.36
CCDC28A-202ENST00000611852 SLC44A4Q53GD3 710 aa17.3■□□□□ 0.36
CCDC28A-202ENST00000611852 C2CD6Q53TS8 623 aa17.3■□□□□ 0.36
CCDC28A-202ENST00000611852 EFHC1Q5JVL4 640 aa17.3■□□□□ 0.36
CCDC28A-202ENST00000611852 HGSNATQ68CP4 663 aa17.3■□□□□ 0.36
CCDC28A-202ENST00000611852 TOGARAM2Q6ZUX3 1019 aa17.3■□□□□ 0.36
CCDC28A-202ENST00000611852 ZNF571Q7Z3V5 609 aaPredicted RBP17.3■□□□□ 0.36
CCDC28A-202ENST00000611852 XYLT1Q86Y38 959 aa17.3■□□□□ 0.36
CCDC28A-202ENST00000611852 MSANTD4Q8NCY6 345 aa17.3■□□□□ 0.36
CCDC28A-202ENST00000611852 SLC30A5Q8TAD4 765 aa17.3■□□□□ 0.36
CCDC28A-202ENST00000611852 TRIM62Q9BVG3 475 aa17.3■□□□□ 0.36
CCDC28A-202ENST00000611852 LINC00597Q9H2U6 94 aa17.3■□□□□ 0.36
CCDC28A-202ENST00000611852 EBF3Q9H4W6 596 aa17.3■□□□□ 0.36
CCDC28A-202ENST00000611852 C11orf16Q9NQ32 467 aa17.3■□□□□ 0.36
CCDC28A-202ENST00000611852 HPS4Q9NQG7 708 aa17.3■□□□□ 0.36
CCDC28A-202ENST00000611852 ARHGEF3Q9NR81 526 aa17.3■□□□□ 0.36
CCDC28A-202ENST00000611852 GTSE1Q9NYZ3 720 aa17.3■□□□□ 0.36
CCDC28A-202ENST00000611852 SFMBT1Q9UHJ3 866 aa17.3■□□□□ 0.36
CCDC28A-202ENST00000611852 STRIP2Q9ULQ0 834 aa17.3■□□□□ 0.36
CCDC28A-202ENST00000611852 CA14Q9ULX7 337 aa17.3■□□□□ 0.36
CCDC28A-202ENST00000611852 NAALADL1Q9UQQ1 740 aa17.3■□□□□ 0.36
CCDC28A-202ENST00000611852 SH3BP1Q9Y3L3 701 aa17.3■□□□□ 0.36
CCDC28A-202ENST00000611852 TMEM221A6NGB7 291 aa17.29■□□□□ 0.36
CCDC28A-202ENST00000611852 M0R296 226 aa17.29■□□□□ 0.36
CCDC28A-202ENST00000611852 ARSAP15289 507 aa17.29■□□□□ 0.36
CCDC28A-202ENST00000611852 TNFAIP3P21580 790 aa17.29■□□□□ 0.36
CCDC28A-202ENST00000611852 NSFP46459 744 aaKnown RBP17.29■□□□□ 0.36
CCDC28A-202ENST00000611852 IFNAR2P48551 515 aa17.29■□□□□ 0.36
CCDC28A-202ENST00000611852 EML3Q32P44 896 aa17.29■□□□□ 0.36
CCDC28A-202ENST00000611852 SYPL2Q5VXT5 272 aa17.29■□□□□ 0.36
CCDC28A-202ENST00000611852 MMS22LQ6ZRQ5 1243 aa17.29■□□□□ 0.36
CCDC28A-202ENST00000611852 HTR3DQ70Z44 454 aa17.29■□□□□ 0.36
CCDC28A-202ENST00000611852 SLC26A9Q7LBE3 791 aa17.29■□□□□ 0.36
CCDC28A-202ENST00000611852 SIX5Q8N196 739 aa17.29■□□□□ 0.36
CCDC28A-202ENST00000611852 CSGALNACT1Q8TDX6 532 aa17.29■□□□□ 0.36
CCDC28A-202ENST00000611852 SLC12A8A0AV02 714 aa17.28■□□□□ 0.36
CCDC28A-202ENST00000611852 OTOL1A6NHN0 477 aaPredicted RBP17.28■□□□□ 0.36
CCDC28A-202ENST00000611852 SLC9A3R1O14745 358 aaPredicted RBP17.28■□□□□ 0.36
CCDC28A-202ENST00000611852 CAPN9O14815 690 aa17.28■□□□□ 0.36
CCDC28A-202ENST00000611852 HSF2BPO75031 334 aa17.28■□□□□ 0.36
CCDC28A-202ENST00000611852 GRAP2O75791 330 aa17.28■□□□□ 0.36
CCDC28A-202ENST00000611852 STC2O76061 302 aa17.28■□□□□ 0.36
CCDC28A-202ENST00000611852 SCNN1AP37088 669 aa17.28■□□□□ 0.36
CCDC28A-202ENST00000611852 ZNF75DP51815 510 aa17.28■□□□□ 0.36
CCDC28A-202ENST00000611852 RUNX3Q13761 415 aa17.28■□□□□ 0.36
CCDC28A-202ENST00000611852 MLF2Q15773 248 aaPredicted RBP17.28■□□□□ 0.36
CCDC28A-202ENST00000611852 PHF13Q86YI8 300 aaPredicted RBP17.28■□□□□ 0.36
CCDC28A-202ENST00000611852 DQX1Q8TE96 717 aaKnown RBP17.28■□□□□ 0.36
CCDC28A-202ENST00000611852 SLC2A13Q96QE2 648 aa17.28■□□□□ 0.36
CCDC28A-202ENST00000611852 C11orf70Q9BRQ4 267 aa17.28■□□□□ 0.36
CCDC28A-202ENST00000611852 TBC1D14Q9P2M4 693 aa17.28■□□□□ 0.36
CCDC28A-202ENST00000611852 BZW2Q9Y6E2 419 aaKnown RBP17.28■□□□□ 0.36
CCDC28A-202ENST00000611852 MSI1O43347 362 aaKnown RBP17.27■□□□□ 0.36
CCDC28A-202ENST00000611852 HMBSP08397 361 aa17.27■□□□□ 0.36
CCDC28A-202ENST00000611852 HNRNPH3P31942 346 aaKnown RBP17.27■□□□□ 0.36
CCDC28A-202ENST00000611852 PTP4A2Q12974 167 aa17.27■□□□□ 0.36
CCDC28A-202ENST00000611852 ITPRIPL2Q3MIP1 535 aa17.27■□□□□ 0.36
CCDC28A-202ENST00000611852 BBS7Q8IWZ6 715 aa17.27■□□□□ 0.36
CCDC28A-202ENST00000611852 ADGRG2Q8IZP9 1017 aa17.27■□□□□ 0.36
CCDC28A-202ENST00000611852 DEFB106AQ8N104 65 aa17.27■□□□□ 0.36
CCDC28A-202ENST00000611852 TTC8Q8TAM2 541 aa17.27■□□□□ 0.36
CCDC28A-202ENST00000611852 ATP2A3Q93084 1043 aa17.27■□□□□ 0.36
CCDC28A-202ENST00000611852 MRFAP1L1Q96HT8 127 aa17.27■□□□□ 0.36
CCDC28A-202ENST00000611852 DNAJC7Q99615 494 aa17.27■□□□□ 0.36
CCDC28A-202ENST00000611852 LSM7Q9UK45 103 aaKnown RBP17.27■□□□□ 0.36
CCDC28A-202ENST00000611852 HBS1LQ9Y450 684 aaKnown RBP17.27■□□□□ 0.36
CCDC28A-202ENST00000611852 PIAS3Q9Y6X2 628 aa17.27■□□□□ 0.36
CCDC28A-202ENST00000611852 COL4A3Q01955 1670 aa17.27■□□□□ 0.36
CCDC28A-202ENST00000611852 F5P12259 2224 aa17.27■□□□□ 0.36
CCDC28A-202ENST00000611852 FAM86C2PA6NEL3 165 aa17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 SHISA7A6NL88 538 aa17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 GPR37L1O60883 481 aa17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 PDGFBP01127 241 aaPredicted RBP17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 KLKB1P03952 638 aa17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 SERPING1P05155 500 aa17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 TPM1P09493 284 aa17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 GLULP15104 373 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms