RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 GOLGA8FQ08AF8 430 aa16.91■□□□□ 0.3
TRIM28-213ENST00000598355 GOLGA8DPQ0D2H9 430 aa16.91■□□□□ 0.3
TRIM28-213ENST00000598355 DRAP1Q14919 205 aaPredicted RBP16.91■□□□□ 0.3
TRIM28-213ENST00000598355 ZNF528Q3MIS6 628 aa16.91■□□□□ 0.3
TRIM28-213ENST00000598355 BSPRYQ5W0U4 402 aa16.91■□□□□ 0.3
TRIM28-213ENST00000598355 Q6ZS52 159 aa16.91■□□□□ 0.3
TRIM28-213ENST00000598355 DHX40Q8IX18 779 aaKnown RBP16.91■□□□□ 0.3
TRIM28-213ENST00000598355 ETFBKMTQ8IXQ9 262 aa16.91■□□□□ 0.3
TRIM28-213ENST00000598355 TTC16Q8NEE8 873 aa16.91■□□□□ 0.3
TRIM28-213ENST00000598355 CD101Q93033 1021 aa16.91■□□□□ 0.3
TRIM28-213ENST00000598355 FAM122AQ96E09 287 aa16.91■□□□□ 0.3
TRIM28-213ENST00000598355 P2RY13Q9BPV8 354 aa16.91■□□□□ 0.3
TRIM28-213ENST00000598355 LSM14BQ9BX40 385 aaKnown RBP16.91■□□□□ 0.3
TRIM28-213ENST00000598355 VPS16Q9H269 839 aa16.91■□□□□ 0.3
TRIM28-213ENST00000598355 FBRSL1Q9HCM7 1045 aaKnown RBP16.91■□□□□ 0.3
TRIM28-213ENST00000598355 F8VZ95 297 aa16.9■□□□□ 0.3
TRIM28-213ENST00000598355 ADH1CP00326 375 aa16.9■□□□□ 0.3
TRIM28-213ENST00000598355 IRF1P10914 325 aa16.9■□□□□ 0.3
TRIM28-213ENST00000598355 DRD1P21728 446 aa16.9■□□□□ 0.3
TRIM28-213ENST00000598355 ACADSBP45954 432 aa16.9■□□□□ 0.3
TRIM28-213ENST00000598355 COG7P83436 770 aa16.9■□□□□ 0.3
TRIM28-213ENST00000598355 PDCLQ13371 301 aa16.9■□□□□ 0.3
TRIM28-213ENST00000598355 LY6G5CQ5SRR4 150 aa16.9■□□□□ 0.3
TRIM28-213ENST00000598355 BEND5Q7L4P6 421 aa16.9■□□□□ 0.3
TRIM28-213ENST00000598355 TMEM110Q86TL2 294 aa16.9■□□□□ 0.3
TRIM28-213ENST00000598355 SLC47A2Q86VL8 602 aa16.9■□□□□ 0.3
TRIM28-213ENST00000598355 FAM217AQ8IXS0 508 aa16.9■□□□□ 0.3
TRIM28-213ENST00000598355 PHTF2Q8N3S3 785 aa16.9■□□□□ 0.3
TRIM28-213ENST00000598355 SPEM1Q8N4L4 309 aa16.9■□□□□ 0.3
TRIM28-213ENST00000598355 CLEC4CQ8WTT0 213 aa16.9■□□□□ 0.3
TRIM28-213ENST00000598355 EXOC4Q96A65 974 aa16.9■□□□□ 0.3
TRIM28-213ENST00000598355 ERGIC2Q96RQ1 377 aa16.9■□□□□ 0.3
TRIM28-213ENST00000598355 NAT10Q9H0A0 1025 aaKnown RBP16.9■□□□□ 0.3
TRIM28-213ENST00000598355 LHX5Q9H2C1 402 aa16.9■□□□□ 0.3
TRIM28-213ENST00000598355 ABCC13Q9NSE7 274 aa16.9■□□□□ 0.3
TRIM28-213ENST00000598355 SPATA6Q9NWH7 488 aaPredicted RBP16.9■□□□□ 0.3
TRIM28-213ENST00000598355 MARK1Q9P0L2 795 aa16.9■□□□□ 0.3
TRIM28-213ENST00000598355 MARCH2Q9P0N8 246 aa16.9■□□□□ 0.3
TRIM28-213ENST00000598355 LSM7Q9UK45 103 aaKnown RBP16.9■□□□□ 0.3
TRIM28-213ENST00000598355 PES1O00541 588 aaKnown RBP16.89■□□□□ 0.29
TRIM28-213ENST00000598355 EPHB6O15197 1021 aa16.89■□□□□ 0.29
TRIM28-213ENST00000598355 SART1O43290 800 aaKnown RBP16.89■□□□□ 0.29
TRIM28-213ENST00000598355 LAMTOR5O43504 91 aa16.89■□□□□ 0.29
TRIM28-213ENST00000598355 EGFP01133 1207 aa16.89■□□□□ 0.29
TRIM28-213ENST00000598355 LTFP02788 710 aa16.89■□□□□ 0.29
TRIM28-213ENST00000598355 KLKB1P03952 638 aa16.89■□□□□ 0.29
TRIM28-213ENST00000598355 SP9P0CG40 484 aa16.89■□□□□ 0.29
TRIM28-213ENST00000598355 ADH5P11766 374 aa16.89■□□□□ 0.29
TRIM28-213ENST00000598355 ATP1A3P13637 1013 aa16.89■□□□□ 0.29
TRIM28-213ENST00000598355 LCP1P13796 627 aa16.89■□□□□ 0.29
TRIM28-213ENST00000598355 CDH5P33151 784 aaPredicted RBP16.89■□□□□ 0.29
TRIM28-213ENST00000598355 GALK1P51570 392 aa16.89■□□□□ 0.29
TRIM28-213ENST00000598355 JAM2P57087 298 aa16.89■□□□□ 0.29
TRIM28-213ENST00000598355 PTK2Q05397 1052 aa16.89■□□□□ 0.29
TRIM28-213ENST00000598355 EFEMP1Q12805 493 aa16.89■□□□□ 0.29
TRIM28-213ENST00000598355 GRSF1Q12849 480 aaKnown RBP eCLIP16.89■□□□□ 0.29
TRIM28-213ENST00000598355 TRIP4Q15650 581 aaPredicted RBP16.89■□□□□ 0.29
TRIM28-213ENST00000598355 FBXO43Q4G163 708 aa16.89■□□□□ 0.29
TRIM28-213ENST00000598355 BTBD8Q5XKL5 378 aa16.89■□□□□ 0.29
TRIM28-213ENST00000598355 C12orf40Q86WS4 652 aa16.89■□□□□ 0.29
TRIM28-213ENST00000598355 MIB1Q86YT6 1006 aa16.89■□□□□ 0.29
TRIM28-213ENST00000598355 WDTC1Q8N5D0 677 aa16.89■□□□□ 0.29
TRIM28-213ENST00000598355 DDX1Q92499 740 aaKnown RBP16.89■□□□□ 0.29
TRIM28-213ENST00000598355 PLD4Q96BZ4 506 aa16.89■□□□□ 0.29
TRIM28-213ENST00000598355 PHOX2BQ99453 314 aa16.89■□□□□ 0.29
TRIM28-213ENST00000598355 STK33Q9BYT3 514 aa16.89■□□□□ 0.29
TRIM28-213ENST00000598355 SPHK2Q9NRA0 654 aa16.89■□□□□ 0.29
TRIM28-213ENST00000598355 RASAL2Q9UJF2 1139 aa16.89■□□□□ 0.29
TRIM28-213ENST00000598355 HBS1LQ9Y450 684 aaKnown RBP16.89■□□□□ 0.29
TRIM28-213ENST00000598355 SPAG17Q6Q759 2223 aa16.89■□□□□ 0.29
TRIM28-213ENST00000598355 OTOGLQ3ZCN5 2332 aa16.88■□□□□ 0.29
TRIM28-213ENST00000598355 FAM186AA6NE01 2351 aa16.88■□□□□ 0.29
TRIM28-213ENST00000598355 CHURC1-FNTBB4DL54 471 aa16.88■□□□□ 0.29
TRIM28-213ENST00000598355 E5RJQ4 531 aa16.88■□□□□ 0.29
TRIM28-213ENST00000598355 PAPSS1O43252 624 aaPredicted RBP16.88■□□□□ 0.29
TRIM28-213ENST00000598355 IGLV3-27P01718 113 aa16.88■□□□□ 0.29
TRIM28-213ENST00000598355 FYNP06241 537 aa16.88■□□□□ 0.29
TRIM28-213ENST00000598355 TPM2P07951 284 aa16.88■□□□□ 0.29
TRIM28-213ENST00000598355 USP8P40818 1118 aa16.88■□□□□ 0.29
TRIM28-213ENST00000598355 KLK7P49862 253 aa16.88■□□□□ 0.29
TRIM28-213ENST00000598355 CCR3P51677 355 aa16.88■□□□□ 0.29
TRIM28-213ENST00000598355 BPIFB4P59827 614 aa16.88■□□□□ 0.29
TRIM28-213ENST00000598355 RAPGEF1Q13905 1077 aa16.88■□□□□ 0.29
TRIM28-213ENST00000598355 IQCB1Q15051 598 aa16.88■□□□□ 0.29
TRIM28-213ENST00000598355 FKBP15Q5T1M5 1219 aa16.88■□□□□ 0.29
TRIM28-213ENST00000598355 RSRC2Q7L4I2 434 aaKnown RBP16.88■□□□□ 0.29
TRIM28-213ENST00000598355 ANKRD20A12PQ8NF67 263 aa16.88■□□□□ 0.29
TRIM28-213ENST00000598355 EPS8L1Q8TE68 723 aa16.88■□□□□ 0.29
TRIM28-213ENST00000598355 CPXM1Q96SM3 734 aa16.88■□□□□ 0.29
TRIM28-213ENST00000598355 FAM86C1Q9NVL1 165 aa16.88■□□□□ 0.29
TRIM28-213ENST00000598355 STRIP2Q9ULQ0 834 aa16.88■□□□□ 0.29
TRIM28-213ENST00000598355 ZNF510Q9Y2H8 683 aa16.88■□□□□ 0.29
TRIM28-213ENST00000598355 RIF1Q5UIP0 2472 aaKnown RBP16.88■□□□□ 0.29
TRIM28-213ENST00000598355 A0A0A0MRY4 1105 aa16.87■□□□□ 0.29
TRIM28-213ENST00000598355 GFRA2O00451 464 aa16.87■□□□□ 0.29
TRIM28-213ENST00000598355 PIK3R2O00459 728 aa16.87■□□□□ 0.29
TRIM28-213ENST00000598355 CACNG3O60359 315 aa16.87■□□□□ 0.29
TRIM28-213ENST00000598355 CYP11B1P15538 503 aa16.87■□□□□ 0.29
TRIM28-213ENST00000598355 ZNF165P49910 485 aa16.87■□□□□ 0.29
TRIM28-213ENST00000598355 GAD2Q05329 585 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms