RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 CCDC151A5D8V7 595 aa10.18□□□□□ -0.78
LIG3-216ENST00000593099 GOLGA8KD6RF30 607 aa10.18□□□□□ -0.78
LIG3-216ENST00000593099 ADSSP30520 456 aa10.18□□□□□ -0.78
LIG3-216ENST00000593099 OR1E1P30953 314 aa10.18□□□□□ -0.78
LIG3-216ENST00000593099 PPARDQ03181 441 aa10.18□□□□□ -0.78
LIG3-216ENST00000593099 HIF1AQ16665 826 aa10.18□□□□□ -0.78
LIG3-216ENST00000593099 KLHL38Q2WGJ6 581 aa10.18□□□□□ -0.78
LIG3-216ENST00000593099 TKTL2Q9H0I9 626 aa10.18□□□□□ -0.78
LIG3-216ENST00000593099 ATP13A1Q9HD20 1204 aa10.18□□□□□ -0.78
LIG3-216ENST00000593099 ACP6Q9NPH0 428 aa10.18□□□□□ -0.78
LIG3-216ENST00000593099 L1RE1Q9UN81 338 aa10.18□□□□□ -0.78
LIG3-216ENST00000593099 TFR2Q9UP52 801 aa10.18□□□□□ -0.78
LIG3-216ENST00000593099 SIGLEC16A6NMB1 481 aa10.18□□□□□ -0.78
LIG3-216ENST00000593099 CFAP99D6REC4 459 aa10.18□□□□□ -0.78
LIG3-216ENST00000593099 SMAPO00193 183 aa10.18□□□□□ -0.78
LIG3-216ENST00000593099 ENPP3O14638 875 aa10.18□□□□□ -0.78
LIG3-216ENST00000593099 ATP5BP06576 529 aaKnown RBP10.18□□□□□ -0.78
LIG3-216ENST00000593099 GEMP55040 296 aa10.18□□□□□ -0.78
LIG3-216ENST00000593099 C11orf63Q6NUN7 778 aa10.18□□□□□ -0.78
LIG3-216ENST00000593099 TFAP2DQ7Z6R9 452 aa10.18□□□□□ -0.78
LIG3-216ENST00000593099 HDAC11Q96DB2 347 aa10.18□□□□□ -0.78
LIG3-216ENST00000593099 RIPOR3Q96MK2 946 aa10.18□□□□□ -0.78
LIG3-216ENST00000593099 KCNF1Q9H3M0 494 aa10.18□□□□□ -0.78
LIG3-216ENST00000593099 ADGRA3Q8IWK6 1321 aa10.17□□□□□ -0.78
LIG3-216ENST00000593099 LY75O60449 1722 aa10.17□□□□□ -0.78
LIG3-216ENST00000593099 IGKV6D-21A0A0A0MT36 114 aa10.17□□□□□ -0.78
LIG3-216ENST00000593099 PMPCBO75439 489 aa10.17□□□□□ -0.78
LIG3-216ENST00000593099 SPOCD1Q6ZMY3 1216 aa10.17□□□□□ -0.78
LIG3-216ENST00000593099 MFN1Q8IWA4 741 aa10.17□□□□□ -0.78
LIG3-216ENST00000593099 SLC25A41Q8N5S1 370 aa10.17□□□□□ -0.78
LIG3-216ENST00000593099 PPM1NQ8N819 430 aa10.17□□□□□ -0.78
LIG3-216ENST00000593099 KREMEN2Q8NCW0 462 aa10.17□□□□□ -0.78
LIG3-216ENST00000593099 FAXDC2Q96IV6 333 aa10.17□□□□□ -0.78
LIG3-216ENST00000593099 MS4A14Q96JA4 679 aa10.17□□□□□ -0.78
LIG3-216ENST00000593099 RAD9AQ99638 391 aa10.17□□□□□ -0.78
LIG3-216ENST00000593099 TBC1D3BA6NDS4 549 aa10.17□□□□□ -0.78
LIG3-216ENST00000593099 TROVE2P10155 538 aaKnown RBP eCLIP10.17□□□□□ -0.78
LIG3-216ENST00000593099 CYP2F1P24903 491 aa10.17□□□□□ -0.78
LIG3-216ENST00000593099 AKT1P31749 480 aa10.17□□□□□ -0.78
LIG3-216ENST00000593099 SLCO1A2P46721 670 aa10.17□□□□□ -0.78
LIG3-216ENST00000593099 ZC3H12AQ5D1E8 599 aaKnown RBP10.17□□□□□ -0.78
LIG3-216ENST00000593099 LCLAT1Q6UWP7 414 aa10.17□□□□□ -0.78
LIG3-216ENST00000593099 TRIM42Q8IWZ5 723 aa10.17□□□□□ -0.78
LIG3-216ENST00000593099 ZBED8Q8IZ13 594 aa10.17□□□□□ -0.78
LIG3-216ENST00000593099 TTC8Q8TAM2 541 aa10.17□□□□□ -0.78
LIG3-216ENST00000593099 FBF1Q8TES7 1133 aa10.17□□□□□ -0.78
LIG3-216ENST00000593099 FAM118BQ9BPY3 351 aa10.17□□□□□ -0.78
LIG3-216ENST00000593099 PARD6BQ9BYG5 372 aa10.17□□□□□ -0.78
LIG3-216ENST00000593099 NDFIP2Q9NV92 336 aa10.17□□□□□ -0.78
LIG3-216ENST00000593099 TBK1Q9UHD2 729 aa10.17□□□□□ -0.78
LIG3-216ENST00000593099 BAIAP3O94812 1187 aa10.17□□□□□ -0.78
LIG3-216ENST00000593099 ENDOD1O94919 500 aa10.17□□□□□ -0.78
LIG3-216ENST00000593099 LUC7L3O95232 432 aaKnown RBP10.17□□□□□ -0.78
LIG3-216ENST00000593099 RALBP11234 206 aa10.17□□□□□ -0.78
LIG3-216ENST00000593099 TKTP29401 623 aaKnown RBP10.17□□□□□ -0.78
LIG3-216ENST00000593099 RANBP1P43487 201 aa10.17□□□□□ -0.78
LIG3-216ENST00000593099 TAF10Q12962 218 aa10.17□□□□□ -0.78
LIG3-216ENST00000593099 TIGD5Q53EQ6 642 aa10.17□□□□□ -0.78
LIG3-216ENST00000593099 GPR158Q5T848 1215 aa10.17□□□□□ -0.78
LIG3-216ENST00000593099 ICE2Q659A1 982 aa10.17□□□□□ -0.78
LIG3-216ENST00000593099 FAM183BPQ6ZVS7 135 aa10.17□□□□□ -0.78
LIG3-216ENST00000593099 LINC00523Q86TU6 105 aa10.17□□□□□ -0.78
LIG3-216ENST00000593099 GBP7Q8N8V2 638 aaPredicted RBP10.17□□□□□ -0.78
LIG3-216ENST00000593099 FAM71DQ8N9W8 422 aa10.17□□□□□ -0.78
LIG3-216ENST00000593099 C2orf15Q8WU43 125 aaKnown RBP10.17□□□□□ -0.78
LIG3-216ENST00000593099 LACRTQ9GZZ8 138 aa10.17□□□□□ -0.78
LIG3-216ENST00000593099 CDHR5Q9HBB8 845 aa10.17□□□□□ -0.78
LIG3-216ENST00000593099 DOLKQ9UPQ8 538 aa10.17□□□□□ -0.78
LIG3-216ENST00000593099 STXBP5LQ9Y2K9 1186 aa10.17□□□□□ -0.78
LIG3-216ENST00000593099 CALCAP01258 141 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 GLI1P08151 1106 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 ACADMP11310 421 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 SP100P23497 879 aaPredicted RBP10.16□□□□□ -0.78
LIG3-216ENST00000593099 CST5P28325 142 aaPredicted RBP10.16□□□□□ -0.78
LIG3-216ENST00000593099 FDFT1P37268 417 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 MRPS5P82675 430 aaKnown RBP10.16□□□□□ -0.78
LIG3-216ENST00000593099 PRSS55Q6UWB4 352 aaPredicted RBP10.16□□□□□ -0.78
LIG3-216ENST00000593099 TPGS1Q6ZTW0 290 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 GPR152Q8TDT2 470 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 TRAIPQ9BWF2 469 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 ABCF3Q9NUQ8 709 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 VANGL2Q9ULK5 521 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 TPX2Q9ULW0 747 aaKnown RBP10.16□□□□□ -0.78
LIG3-216ENST00000593099 ADGRA2Q96PE1 1338 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 PRR23AA6NEV1 266 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 ZNF185O15231 689 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 STX7O15400 261 aaKnown RBP10.16□□□□□ -0.78
LIG3-216ENST00000593099 CCL16O15467 120 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 MAP3K7O43318 606 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 LZTS3O60299 673 aaPredicted RBP10.16□□□□□ -0.78
LIG3-216ENST00000593099 RNF40O75150 1001 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 MAP3K6O95382 1288 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 JCHAINP01591 159 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 C8AP07357 584 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 KCNE1P15382 129 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 WARSP23381 471 aaKnown RBP10.16□□□□□ -0.78
LIG3-216ENST00000593099 MIPP30301 263 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 RENBPP51606 427 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 TPGS2Q68CL5 300 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 FRA10AC1Q70Z53 315 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms