RNA–Protein interactions for RNA: ENST00000588131.1

VMP1-207, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-207ENST00000588131 CEP104O60308 925 aa11.79□□□□□ -0.52
VMP1-207ENST00000588131 TADA3O75528 432 aa11.79□□□□□ -0.52
VMP1-207ENST00000588131 IGLV3-25P01717 112 aa11.79□□□□□ -0.52
VMP1-207ENST00000588131 KRT1P04264 644 aa11.79□□□□□ -0.52
VMP1-207ENST00000588131 RARAP10276 462 aa11.79□□□□□ -0.52
VMP1-207ENST00000588131 PYGMP11217 842 aa11.79□□□□□ -0.52
VMP1-207ENST00000588131 RDXP35241 583 aaKnown RBP11.79□□□□□ -0.52
VMP1-207ENST00000588131 EPHB3P54753 998 aa11.79□□□□□ -0.52
VMP1-207ENST00000588131 RWDD2BP57060 319 aa11.79□□□□□ -0.52
VMP1-207ENST00000588131 NME3Q13232 169 aa11.79□□□□□ -0.52
VMP1-207ENST00000588131 HADHQ16836 314 aaKnown RBP11.79□□□□□ -0.52
VMP1-207ENST00000588131 SMTNL2Q2TAL5 461 aa11.79□□□□□ -0.52
VMP1-207ENST00000588131 KCNT1Q5JUK3 1230 aa11.79□□□□□ -0.52
VMP1-207ENST00000588131 LRRC38Q5VT99 294 aa11.79□□□□□ -0.52
VMP1-207ENST00000588131 SCYL2Q6P3W7 929 aa11.79□□□□□ -0.52
VMP1-207ENST00000588131 CCDC149Q6ZUS6 474 aa11.79□□□□□ -0.52
VMP1-207ENST00000588131 ANKS1BQ7Z6G8 1248 aa11.79□□□□□ -0.52
VMP1-207ENST00000588131 DNAJB7Q7Z6W7 309 aaPredicted RBP11.79□□□□□ -0.52
VMP1-207ENST00000588131 RBM23Q86U06 439 aaKnown RBP11.79□□□□□ -0.52
VMP1-207ENST00000588131 CREG2Q8IUH2 290 aa11.79□□□□□ -0.52
VMP1-207ENST00000588131 KATNAL2Q8IYT4 538 aa11.79□□□□□ -0.52
VMP1-207ENST00000588131 ARHGAP18Q8N392 663 aa11.79□□□□□ -0.52
VMP1-207ENST00000588131 UBE2Q2Q8WVN8 375 aa11.79□□□□□ -0.52
VMP1-207ENST00000588131 CASP10Q92851 521 aa11.79□□□□□ -0.52
VMP1-207ENST00000588131 PSMG2Q969U7 264 aa11.79□□□□□ -0.52
VMP1-207ENST00000588131 TRMT2BQ96GJ1 504 aaKnown RBP11.79□□□□□ -0.52
VMP1-207ENST00000588131 PBKQ96KB5 322 aa11.79□□□□□ -0.52
VMP1-207ENST00000588131 MYRFLQ96LU7 910 aa11.79□□□□□ -0.52
VMP1-207ENST00000588131 SLITRK1Q96PX8 696 aa11.79□□□□□ -0.52
VMP1-207ENST00000588131 TRIM62Q9BVG3 475 aa11.79□□□□□ -0.52
VMP1-207ENST00000588131 CARD9Q9H257 536 aa11.79□□□□□ -0.52
VMP1-207ENST00000588131 FAM204AQ9H8W3 233 aa11.79□□□□□ -0.52
VMP1-207ENST00000588131 MAN1C1Q9NR34 630 aa11.79□□□□□ -0.52
VMP1-207ENST00000588131 TLR8Q9NR97 1041 aaKnown RBP11.79□□□□□ -0.52
VMP1-207ENST00000588131 PIGVQ9NUD9 493 aa11.79□□□□□ -0.52
VMP1-207ENST00000588131 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.79□□□□□ -0.52
VMP1-207ENST00000588131 GPATCH2LQ9NWQ4 482 aa11.79□□□□□ -0.52
VMP1-207ENST00000588131 MTCL1Q9Y4B5 1905 aaKnown RBP11.79□□□□□ -0.52
VMP1-207ENST00000588131 PI4K2BG5E9Z4 385 aa11.78□□□□□ -0.52
VMP1-207ENST00000588131 CES2O00748 559 aa11.78□□□□□ -0.52
VMP1-207ENST00000588131 RIOK3O14730 519 aaKnown RBP11.78□□□□□ -0.52
VMP1-207ENST00000588131 MDM4O15151 490 aa11.78□□□□□ -0.52
VMP1-207ENST00000588131 CCL16O15467 120 aa11.78□□□□□ -0.52
VMP1-207ENST00000588131 PRPSAP2O60256 369 aa11.78□□□□□ -0.52
VMP1-207ENST00000588131 LRG1P02750 347 aa11.78□□□□□ -0.52
VMP1-207ENST00000588131 RARGP13631 454 aa11.78□□□□□ -0.52
VMP1-207ENST00000588131 DESP17661 470 aa11.78□□□□□ -0.52
VMP1-207ENST00000588131 RBM10P98175 930 aaKnown RBP11.78□□□□□ -0.52
VMP1-207ENST00000588131 DEUP1Q05D60 604 aa11.78□□□□□ -0.52
VMP1-207ENST00000588131 EIF4EBP2Q13542 120 aaPredicted RBP11.78□□□□□ -0.52
VMP1-207ENST00000588131 TAF12Q16514 161 aa11.78□□□□□ -0.52
VMP1-207ENST00000588131 CA9Q16790 459 aa11.78□□□□□ -0.52
VMP1-207ENST00000588131 WHAMMP3Q1A5X7 153 aa11.78□□□□□ -0.52
VMP1-207ENST00000588131 PPM1LQ5SGD2 360 aa11.78□□□□□ -0.52
VMP1-207ENST00000588131 MSANTD2Q6P1R3 559 aa11.78□□□□□ -0.52
VMP1-207ENST00000588131 POLNQ7Z5Q5 900 aa11.78□□□□□ -0.52
VMP1-207ENST00000588131 FAM131BQ86XD5 332 aa11.78□□□□□ -0.52
VMP1-207ENST00000588131 HS6ST3Q8IZP7 471 aa11.78□□□□□ -0.52
VMP1-207ENST00000588131 RASGEF1CQ8N431 466 aa11.78□□□□□ -0.52
VMP1-207ENST00000588131 CCDC185Q8N715 623 aa11.78□□□□□ -0.52
VMP1-207ENST00000588131 LRRN4CLQ8ND94 238 aa11.78□□□□□ -0.52
VMP1-207ENST00000588131 RNF139Q8WU17 664 aa11.78□□□□□ -0.52
VMP1-207ENST00000588131 RAPGEF5Q92565 580 aa11.78□□□□□ -0.52
VMP1-207ENST00000588131 HSPH1Q92598 858 aa11.78□□□□□ -0.52
VMP1-207ENST00000588131 RNF25Q96BH1 459 aaPredicted RBP11.78□□□□□ -0.52
VMP1-207ENST00000588131 PGAP3Q96FM1 320 aaPredicted RBP11.78□□□□□ -0.52
VMP1-207ENST00000588131 HERPUD2Q9BSE4 406 aa11.78□□□□□ -0.52
VMP1-207ENST00000588131 SNRNP25Q9BV90 132 aaKnown RBP11.78□□□□□ -0.52
VMP1-207ENST00000588131 CARD6Q9BX69 1037 aa11.78□□□□□ -0.52
VMP1-207ENST00000588131 SMOC2Q9H3U7 446 aa11.78□□□□□ -0.52
VMP1-207ENST00000588131 IL21Q9HBE4 155 aa11.78□□□□□ -0.52
VMP1-207ENST00000588131 WDR6Q9NNW5 1121 aaKnown RBP11.78□□□□□ -0.52
VMP1-207ENST00000588131 ANLNQ9NQW6 1124 aa11.78□□□□□ -0.52
VMP1-207ENST00000588131 TMPRSS4Q9NRS4 437 aa11.78□□□□□ -0.52
VMP1-207ENST00000588131 DDIT4Q9NX09 232 aa11.78□□□□□ -0.52
VMP1-207ENST00000588131 RRN3Q9NYV6 651 aa11.78□□□□□ -0.52
VMP1-207ENST00000588131 CLIC5Q9NZA1 410 aa11.78□□□□□ -0.52
VMP1-207ENST00000588131 SFMBT1Q9UHJ3 866 aa11.78□□□□□ -0.52
VMP1-207ENST00000588131 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.78□□□□□ -0.52
VMP1-207ENST00000588131 OBSL1O75147 1896 aa11.78□□□□□ -0.52
VMP1-207ENST00000588131 ZNF840PA6NDX5 716 aa11.77□□□□□ -0.53
VMP1-207ENST00000588131 I6L893 689 aaPredicted RBP11.77□□□□□ -0.53
VMP1-207ENST00000588131 IRAK2O43187 625 aa11.77□□□□□ -0.53
VMP1-207ENST00000588131 MSI1O43347 362 aaKnown RBP11.77□□□□□ -0.53
VMP1-207ENST00000588131 RFPL2O75678 378 aa11.77□□□□□ -0.53
VMP1-207ENST00000588131 ZMYND10O75800 440 aa11.77□□□□□ -0.53
VMP1-207ENST00000588131 TBX18O95935 607 aa11.77□□□□□ -0.53
VMP1-207ENST00000588131 C1RP00736 705 aa11.77□□□□□ -0.53
VMP1-207ENST00000588131 KRT7P08729 469 aa11.77□□□□□ -0.53
VMP1-207ENST00000588131 CD48P09326 243 aa11.77□□□□□ -0.53
VMP1-207ENST00000588131 RALAP11233 206 aa11.77□□□□□ -0.53
VMP1-207ENST00000588131 NRIP1P48552 1158 aa11.77□□□□□ -0.53
VMP1-207ENST00000588131 PSEN1P49768 467 aa11.77□□□□□ -0.53
VMP1-207ENST00000588131 ARSEP51690 589 aa11.77□□□□□ -0.53
VMP1-207ENST00000588131 TUBB2AQ13885 445 aa11.77□□□□□ -0.53
VMP1-207ENST00000588131 LLGL1Q15334 1064 aa11.77□□□□□ -0.53
VMP1-207ENST00000588131 DUSP6Q16828 381 aa11.77□□□□□ -0.53
VMP1-207ENST00000588131 ZC3H12AQ5D1E8 599 aaKnown RBP11.77□□□□□ -0.53
VMP1-207ENST00000588131 ZFYVE27Q5T4F4 411 aa11.77□□□□□ -0.53
VMP1-207ENST00000588131 SNX30Q5VWJ9 437 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms