RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 ZBTB24O43167 697 aaPredicted RBP19.71■□□□□ 0.75
CLN3-218ENST00000565688 EPB41P11171 864 aaKnown RBP19.71■□□□□ 0.75
CLN3-218ENST00000565688 RALAP11233 206 aa19.71■□□□□ 0.75
CLN3-218ENST00000565688 TYRP14679 529 aa19.71■□□□□ 0.75
CLN3-218ENST00000565688 NTSR1P30989 418 aa19.71■□□□□ 0.75
CLN3-218ENST00000565688 DPP6P42658 865 aa19.71■□□□□ 0.75
CLN3-218ENST00000565688 MXI1P50539 228 aa19.71■□□□□ 0.75
CLN3-218ENST00000565688 PPP1R26Q5T8A7 1209 aaPredicted RBP19.71■□□□□ 0.75
CLN3-218ENST00000565688 DAB2IPQ5VWQ8 1189 aa19.71■□□□□ 0.75
CLN3-218ENST00000565688 SDE2Q6IQ49 451 aa19.71■□□□□ 0.75
CLN3-218ENST00000565688 HEXIM2Q96MH2 286 aaKnown RBP19.71■□□□□ 0.75
CLN3-218ENST00000565688 NMUR1Q9HB89 426 aa19.71■□□□□ 0.75
CLN3-218ENST00000565688 ZDHHC4Q9NPG8 344 aa19.71■□□□□ 0.75
CLN3-218ENST00000565688 RAB20Q9NX57 234 aa19.71■□□□□ 0.75
CLN3-218ENST00000565688 CLIC5Q9NZA1 410 aa19.71■□□□□ 0.75
CLN3-218ENST00000565688 USP3Q9Y6I4 520 aa19.71■□□□□ 0.75
CLN3-218ENST00000565688 THADAQ6YHU6 1953 aa19.71■□□□□ 0.75
CLN3-218ENST00000565688 KMT2BQ9UMN6 2715 aaPredicted RBP19.71■□□□□ 0.75
CLN3-218ENST00000565688 MAP7D1Q3KQU3 841 aa19.7■□□□□ 0.74
CLN3-218ENST00000565688 N4BP2L1Q5TBK1 243 aaPredicted RBP19.7■□□□□ 0.74
CLN3-218ENST00000565688 TPGS1Q6ZTW0 290 aa19.7■□□□□ 0.74
CLN3-218ENST00000565688 RLN3Q8WXF3 142 aa19.7■□□□□ 0.74
CLN3-218ENST00000565688 PIGKQ92643 395 aa19.7■□□□□ 0.74
CLN3-218ENST00000565688 UBXN6Q9BZV1 441 aa19.7■□□□□ 0.74
CLN3-218ENST00000565688 CISHQ9NSE2 258 aa19.7■□□□□ 0.74
CLN3-218ENST00000565688 EVLQ9UI08 416 aaPredicted RBP19.7■□□□□ 0.74
CLN3-218ENST00000565688 ZNF510Q9Y2H8 683 aa19.7■□□□□ 0.74
CLN3-218ENST00000565688 NUP205Q92621 2012 aa19.69■□□□□ 0.74
CLN3-218ENST00000565688 CACNA1BQ00975 2339 aa19.69■□□□□ 0.74
CLN3-218ENST00000565688 C4orf47A7E2U8 309 aa19.69■□□□□ 0.74
CLN3-218ENST00000565688 KCNK5O95279 499 aa19.69■□□□□ 0.74
CLN3-218ENST00000565688 HOXB2P14652 356 aa19.69■□□□□ 0.74
CLN3-218ENST00000565688 SLC8A3P57103 927 aa19.69■□□□□ 0.74
CLN3-218ENST00000565688 COG7P83436 770 aa19.69■□□□□ 0.74
CLN3-218ENST00000565688 ZNF394Q53GI3 561 aa19.69■□□□□ 0.74
CLN3-218ENST00000565688 Q6ZNB5 142 aa19.69■□□□□ 0.74
CLN3-218ENST00000565688 SCD5Q86SK9 330 aa19.69■□□□□ 0.74
CLN3-218ENST00000565688 ARHGAP18Q8N392 663 aa19.69■□□□□ 0.74
CLN3-218ENST00000565688 SEMA4DQ92854 862 aa19.69■□□□□ 0.74
CLN3-218ENST00000565688 TMEM176AQ96HP8 235 aa19.69■□□□□ 0.74
CLN3-218ENST00000565688 TMEM9BQ9NQ34 198 aa19.69■□□□□ 0.74
CLN3-218ENST00000565688 MBD1Q9UIS9 605 aaPredicted RBP19.69■□□□□ 0.74
CLN3-218ENST00000565688 ANGPTL2Q9UKU9 493 aa19.69■□□□□ 0.74
CLN3-218ENST00000565688 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa19.68■□□□□ 0.74
CLN3-218ENST00000565688 MDM4O15151 490 aa19.68■□□□□ 0.74
CLN3-218ENST00000565688 TRIM24O15164 1050 aa19.68■□□□□ 0.74
CLN3-218ENST00000565688 SLC16A3O15427 465 aaKnown RBP19.68■□□□□ 0.74
CLN3-218ENST00000565688 PMLP29590 882 aa19.68■□□□□ 0.74
CLN3-218ENST00000565688 DGKGP49619 791 aa19.68■□□□□ 0.74
CLN3-218ENST00000565688 LMAN2Q12907 356 aa19.68■□□□□ 0.74
CLN3-218ENST00000565688 SLC36A4Q6YBV0 504 aa19.68■□□□□ 0.74
CLN3-218ENST00000565688 MIB1Q86YT6 1006 aa19.68■□□□□ 0.74
CLN3-218ENST00000565688 SYT12Q8IV01 421 aa19.68■□□□□ 0.74
CLN3-218ENST00000565688 SMYD4Q8IYR2 804 aaPredicted RBP19.68■□□□□ 0.74
CLN3-218ENST00000565688 TMEFF1Q8IYR6 380 aa19.68■□□□□ 0.74
CLN3-218ENST00000565688 CHPFQ8IZ52 775 aa19.68■□□□□ 0.74
CLN3-218ENST00000565688 SLC4A11Q8NBS3 891 aa19.68■□□□□ 0.74
CLN3-218ENST00000565688 EEF2KMTQ96G04 330 aa19.68■□□□□ 0.74
CLN3-218ENST00000565688 GSDMAQ96QA5 445 aa19.68■□□□□ 0.74
CLN3-218ENST00000565688 TSG101Q99816 390 aa19.68■□□□□ 0.74
CLN3-218ENST00000565688 GTPBP4Q9BZE4 634 aaKnown RBP19.68■□□□□ 0.74
CLN3-218ENST00000565688 DCLK3Q9C098 648 aa19.68■□□□□ 0.74
CLN3-218ENST00000565688 GDPD2Q9HCC8 539 aa19.68■□□□□ 0.74
CLN3-218ENST00000565688 NUDT5Q9UKK9 219 aa19.68■□□□□ 0.74
CLN3-218ENST00000565688 HCN2Q9UL51 889 aa19.68■□□□□ 0.74
CLN3-218ENST00000565688 PLXND1Q9Y4D7 1925 aa19.67■□□□□ 0.74
CLN3-218ENST00000565688 AP5Z1O43299 807 aa19.67■□□□□ 0.74
CLN3-218ENST00000565688 STC2O76061 302 aa19.67■□□□□ 0.74
CLN3-218ENST00000565688 GABRG2P18507 467 aa19.67■□□□□ 0.74
CLN3-218ENST00000565688 HOXD12P35452 270 aa19.67■□□□□ 0.74
CLN3-218ENST00000565688 CHKAP35790 457 aa19.67■□□□□ 0.74
CLN3-218ENST00000565688 RAD23BP54727 409 aa19.67■□□□□ 0.74
CLN3-218ENST00000565688 IRX4P78413 519 aa19.67■□□□□ 0.74
CLN3-218ENST00000565688 SHC2P98077 582 aa19.67■□□□□ 0.74
CLN3-218ENST00000565688 PNOCQ13519 176 aa19.67■□□□□ 0.74
CLN3-218ENST00000565688 COBLL1Q53SF7 1204 aa19.67■□□□□ 0.74
CLN3-218ENST00000565688 LYSMD4Q5XG99 296 aa19.67■□□□□ 0.74
CLN3-218ENST00000565688 EGFLAMQ63HQ2 1017 aa19.67■□□□□ 0.74
CLN3-218ENST00000565688 ARHGAP17Q68EM7 881 aa19.67■□□□□ 0.74
CLN3-218ENST00000565688 GABRG3Q99928 467 aa19.67■□□□□ 0.74
CLN3-218ENST00000565688 NUSAP1Q9BXS6 441 aaKnown RBP19.67■□□□□ 0.74
CLN3-218ENST00000565688 MYO18AQ92614 2054 aaKnown RBP19.67■□□□□ 0.74
CLN3-218ENST00000565688 A0A1W2PQF6 199 aa19.66■□□□□ 0.74
CLN3-218ENST00000565688 GOLGA6L4A6NEF3 574 aa19.66■□□□□ 0.74
CLN3-218ENST00000565688 PATE3B3GLJ2 98 aa19.66■□□□□ 0.74
CLN3-218ENST00000565688 GFRA2O00451 464 aa19.66■□□□□ 0.74
CLN3-218ENST00000565688 ZNF217O75362 1048 aa19.66■□□□□ 0.74
CLN3-218ENST00000565688 SMC2O95347 1197 aa19.66■□□□□ 0.74
CLN3-218ENST00000565688 PRCPP42785 496 aa19.66■□□□□ 0.74
CLN3-218ENST00000565688 PTGER3P43115 390 aa19.66■□□□□ 0.74
CLN3-218ENST00000565688 FKBP3Q00688 224 aaKnown RBP19.66■□□□□ 0.74
CLN3-218ENST00000565688 TRIM61Q5EBN2 209 aa19.66■□□□□ 0.74
CLN3-218ENST00000565688 ZNF658Q5TYW1 1059 aaPredicted RBP19.66■□□□□ 0.74
CLN3-218ENST00000565688 TCERG1LQ5VWI1 586 aa19.66■□□□□ 0.74
CLN3-218ENST00000565688 PSAPL1Q6NUJ1 521 aa19.66■□□□□ 0.74
CLN3-218ENST00000565688 ARMCX6Q7L4S7 300 aa19.66■□□□□ 0.74
CLN3-218ENST00000565688 FMR1NBQ8N0W7 255 aaPredicted RBP19.66■□□□□ 0.74
CLN3-218ENST00000565688 FRMD1Q8N878 549 aa19.66■□□□□ 0.74
CLN3-218ENST00000565688 ANKRD52Q8NB46 1076 aa19.66■□□□□ 0.74
CLN3-218ENST00000565688 ARID3AQ99856 593 aa19.66■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms