RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 ZNF697Q5TEC3 545 aa13.37□□□□□ -0.27
CLK3-214ENST00000564096 TRNP1Q6NT89 227 aa13.37□□□□□ -0.27
CLK3-214ENST00000564096 CC2D1AQ6P1N0 951 aaPredicted RBP13.37□□□□□ -0.27
CLK3-214ENST00000564096 MSANTD2Q6P1R3 559 aa13.37□□□□□ -0.27
CLK3-214ENST00000564096 DNAJB7Q7Z6W7 309 aaPredicted RBP13.37□□□□□ -0.27
CLK3-214ENST00000564096 ADGRD2Q7Z7M1 963 aa13.37□□□□□ -0.27
CLK3-214ENST00000564096 RBM23Q86U06 439 aaKnown RBP13.37□□□□□ -0.27
CLK3-214ENST00000564096 TAC4Q86UU9 113 aa13.37□□□□□ -0.27
CLK3-214ENST00000564096 DQX1Q8TE96 717 aaKnown RBP13.37□□□□□ -0.27
CLK3-214ENST00000564096 SLC22A17Q8WUG5 538 aa13.37□□□□□ -0.27
CLK3-214ENST00000564096 KHSRPQ92945 711 aaKnown RBP eCLIP13.37□□□□□ -0.27
CLK3-214ENST00000564096 PGAP3Q96FM1 320 aaPredicted RBP13.37□□□□□ -0.27
CLK3-214ENST00000564096 RBM41Q96IZ5 413 aaKnown RBP13.37□□□□□ -0.27
CLK3-214ENST00000564096 NPY6RQ99463 290 aa13.37□□□□□ -0.27
CLK3-214ENST00000564096 CARD9Q9H257 536 aa13.37□□□□□ -0.27
CLK3-214ENST00000564096 DDIT4Q9NX09 232 aa13.37□□□□□ -0.27
CLK3-214ENST00000564096 LMCD1Q9NZU5 365 aa13.37□□□□□ -0.27
CLK3-214ENST00000564096 USP18Q9UMW8 372 aa13.37□□□□□ -0.27
CLK3-214ENST00000564096 PACSIN2Q9UNF0 486 aaPredicted RBP13.37□□□□□ -0.27
CLK3-214ENST00000564096 SAR1BQ9Y6B6 198 aa13.37□□□□□ -0.27
CLK3-214ENST00000564096 MYO16Q9Y6X6 1858 aa13.37□□□□□ -0.27
CLK3-214ENST00000564096 MYH10P35580 1976 aa13.36□□□□□ -0.27
CLK3-214ENST00000564096 CES2O00748 559 aa13.36□□□□□ -0.27
CLK3-214ENST00000564096 KCNK3O14649 394 aa13.36□□□□□ -0.27
CLK3-214ENST00000564096 PER2O15055 1255 aa13.36□□□□□ -0.27
CLK3-214ENST00000564096 CCL16O15467 120 aa13.36□□□□□ -0.27
CLK3-214ENST00000564096 NCK2O43639 380 aa13.36□□□□□ -0.27
CLK3-214ENST00000564096 TLR5O60602 858 aa13.36□□□□□ -0.27
CLK3-214ENST00000564096 TRUB2O95900 331 aaKnown RBP13.36□□□□□ -0.27
CLK3-214ENST00000564096 KRT1P04264 644 aa13.36□□□□□ -0.27
CLK3-214ENST00000564096 SLC2A3P11169 496 aa13.36□□□□□ -0.27
CLK3-214ENST00000564096 PRLRP16471 622 aa13.36□□□□□ -0.27
CLK3-214ENST00000564096 MIPP30301 263 aa13.36□□□□□ -0.27
CLK3-214ENST00000564096 KPNA1P52294 538 aaPredicted RBP13.36□□□□□ -0.27
CLK3-214ENST00000564096 SLC25A11Q02978 314 aaKnown RBP13.36□□□□□ -0.27
CLK3-214ENST00000564096 NME3Q13232 169 aa13.36□□□□□ -0.27
CLK3-214ENST00000564096 MTA1Q13330 715 aa13.36□□□□□ -0.27
CLK3-214ENST00000564096 C10orf120Q5SQS8 335 aa13.36□□□□□ -0.27
CLK3-214ENST00000564096 HECTD3Q5T447 861 aa13.36□□□□□ -0.27
CLK3-214ENST00000564096 SNX30Q5VWJ9 437 aa13.36□□□□□ -0.27
CLK3-214ENST00000564096 PAPD7Q5XG87 772 aaKnown RBP13.36□□□□□ -0.27
CLK3-214ENST00000564096 PDZD4Q76G19 769 aaPredicted RBP13.36□□□□□ -0.27
CLK3-214ENST00000564096 SCD5Q86SK9 330 aa13.36□□□□□ -0.27
CLK3-214ENST00000564096 MRPS31Q92665 395 aaKnown RBP13.36□□□□□ -0.27
CLK3-214ENST00000564096 CENPIQ92674 756 aaPredicted RBP13.36□□□□□ -0.27
CLK3-214ENST00000564096 CD101Q93033 1021 aa13.36□□□□□ -0.27
CLK3-214ENST00000564096 NT5C3BQ969T7 300 aa13.36□□□□□ -0.27
CLK3-214ENST00000564096 PBKQ96KB5 322 aa13.36□□□□□ -0.27
CLK3-214ENST00000564096 TLR10Q9BXR5 811 aa13.36□□□□□ -0.27
CLK3-214ENST00000564096 NMUR1Q9HB89 426 aa13.36□□□□□ -0.27
CLK3-214ENST00000564096 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.36□□□□□ -0.27
CLK3-214ENST00000564096 COLQQ9Y215 455 aaPredicted RBP13.36□□□□□ -0.27
CLK3-214ENST00000564096 SYNJ2BP-COX16A0A087WUM0 186 aa13.35□□□□□ -0.27
CLK3-214ENST00000564096 ZNF840PA6NDX5 716 aa13.35□□□□□ -0.27
CLK3-214ENST00000564096 MDM4O15151 490 aa13.35□□□□□ -0.27
CLK3-214ENST00000564096 IRAK2O43187 625 aa13.35□□□□□ -0.27
CLK3-214ENST00000564096 URI1O94763 535 aaPredicted RBP13.35□□□□□ -0.27
CLK3-214ENST00000564096 APOEP02649 317 aa13.35□□□□□ -0.27
CLK3-214ENST00000564096 FYNP06241 537 aa13.35□□□□□ -0.27
CLK3-214ENST00000564096 PFKLP17858 780 aa13.35□□□□□ -0.27
CLK3-214ENST00000564096 DDX6P26196 483 aaKnown RBP eCLIP13.35□□□□□ -0.27
CLK3-214ENST00000564096 HDAC4P56524 1084 aa13.35□□□□□ -0.27
CLK3-214ENST00000564096 CKAP4Q07065 602 aaKnown RBP13.35□□□□□ -0.27
CLK3-214ENST00000564096 ARHGAP15Q53QZ3 475 aa13.35□□□□□ -0.27
CLK3-214ENST00000564096 BOLA3Q53S33 107 aa13.35□□□□□ -0.27
CLK3-214ENST00000564096 EFHC2Q5JST6 749 aa13.35□□□□□ -0.27
CLK3-214ENST00000564096 CCDC181Q5TID7 509 aa13.35□□□□□ -0.27
CLK3-214ENST00000564096 SYPL2Q5VXT5 272 aa13.35□□□□□ -0.27
CLK3-214ENST00000564096 SCYL2Q6P3W7 929 aa13.35□□□□□ -0.27
CLK3-214ENST00000564096 KLHDC10Q6PID8 442 aa13.35□□□□□ -0.27
CLK3-214ENST00000564096 PSTKQ8IV42 348 aaKnown RBP13.35□□□□□ -0.27
CLK3-214ENST00000564096 KATNAL2Q8IYT4 538 aa13.35□□□□□ -0.27
CLK3-214ENST00000564096 ZNF276Q8N554 614 aa13.35□□□□□ -0.27
CLK3-214ENST00000564096 CMASQ8NFW8 434 aaPredicted RBP13.35□□□□□ -0.27
CLK3-214ENST00000564096 TEKT4Q8WW24 435 aa13.35□□□□□ -0.27
CLK3-214ENST00000564096 RNF34Q969K3 372 aa13.35□□□□□ -0.27
CLK3-214ENST00000564096 OSBPL9Q96SU4 736 aa13.35□□□□□ -0.27
CLK3-214ENST00000564096 CORO1BQ9BR76 489 aa13.35□□□□□ -0.27
CLK3-214ENST00000564096 ZWILCHQ9H900 591 aa13.35□□□□□ -0.27
CLK3-214ENST00000564096 PIDD1Q9HB75 910 aa13.35□□□□□ -0.27
CLK3-214ENST00000564096 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.35□□□□□ -0.27
CLK3-214ENST00000564096 MARCH2Q9P0N8 246 aa13.35□□□□□ -0.27
CLK3-214ENST00000564096 COX16Q9P0S2 106 aa13.35□□□□□ -0.27
CLK3-214ENST00000564096 ZMYM5Q9UJ78 669 aa13.35□□□□□ -0.27
CLK3-214ENST00000564096 RASAL2Q9UJF2 1139 aa13.35□□□□□ -0.27
CLK3-214ENST00000564096 DNMT3LQ9UJW3 386 aa13.35□□□□□ -0.27
CLK3-214ENST00000564096 PCDHA3Q9Y5H8 950 aa13.35□□□□□ -0.27
CLK3-214ENST00000564096 CLUHO75153 1309 aa13.35□□□□□ -0.27
CLK3-214ENST00000564096 DDX3YO15523 660 aaKnown RBP13.34□□□□□ -0.27
CLK3-214ENST00000564096 ENDOD1O94919 500 aa13.34□□□□□ -0.27
CLK3-214ENST00000564096 IGLV3-25P01717 112 aa13.34□□□□□ -0.27
CLK3-214ENST00000564096 MYL4P12829 197 aa13.34□□□□□ -0.27
CLK3-214ENST00000564096 PTPN2P17706 415 aa13.34□□□□□ -0.27
CLK3-214ENST00000564096 GABRR2P28476 465 aa13.34□□□□□ -0.27
CLK3-214ENST00000564096 CCR1P32246 355 aa13.34□□□□□ -0.27
CLK3-214ENST00000564096 ATP5C1P36542 298 aaKnown RBP13.34□□□□□ -0.27
CLK3-214ENST00000564096 TAS2R40P59535 323 aa13.34□□□□□ -0.27
CLK3-214ENST00000564096 AMPD2Q01433 879 aa13.34□□□□□ -0.27
CLK3-214ENST00000564096 EFEMP1Q12805 493 aa13.34□□□□□ -0.27
CLK3-214ENST00000564096 KRT81Q14533 505 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms