RNA–Protein interactions for RNA: ENST00000563448.1

SMG1-208, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,016 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-208ENST00000563448 EPOPA6NHQ4 379 aa10.6□□□□□ -0.71
SMG1-208ENST00000563448 LPXNO60711 386 aa10.6□□□□□ -0.71
SMG1-208ENST00000563448 CLASP2O75122 1294 aaKnown RBP10.6□□□□□ -0.71
SMG1-208ENST00000563448 SLU7O95391 586 aaKnown RBP10.6□□□□□ -0.71
SMG1-208ENST00000563448 KRT1P04264 644 aa10.6□□□□□ -0.71
SMG1-208ENST00000563448 KRT7P08729 469 aa10.6□□□□□ -0.71
SMG1-208ENST00000563448 ZDHHC11BP0C7U3 371 aa10.6□□□□□ -0.71
SMG1-208ENST00000563448 DEUP1Q05D60 604 aa10.6□□□□□ -0.71
SMG1-208ENST00000563448 SEL1L2Q5TEA6 688 aa10.6□□□□□ -0.71
SMG1-208ENST00000563448 TAC4Q86UU9 113 aa10.6□□□□□ -0.71
SMG1-208ENST00000563448 ARHGAP18Q8N392 663 aa10.6□□□□□ -0.71
SMG1-208ENST00000563448 CCDC185Q8N715 623 aa10.6□□□□□ -0.71
SMG1-208ENST00000563448 KREMEN2Q8NCW0 462 aa10.6□□□□□ -0.71
SMG1-208ENST00000563448 EXD1Q8NHP7 514 aa10.6□□□□□ -0.71
SMG1-208ENST00000563448 DQX1Q8TE96 717 aaKnown RBP10.6□□□□□ -0.71
SMG1-208ENST00000563448 RAPGEF5Q92565 580 aa10.6□□□□□ -0.71
SMG1-208ENST00000563448 MYRFLQ96LU7 910 aa10.6□□□□□ -0.71
SMG1-208ENST00000563448 WDR6Q9NNW5 1121 aaKnown RBP10.6□□□□□ -0.71
SMG1-208ENST00000563448 TLR8Q9NR97 1041 aaKnown RBP10.6□□□□□ -0.71
SMG1-208ENST00000563448 PIGVQ9NUD9 493 aa10.6□□□□□ -0.71
SMG1-208ENST00000563448 DDX56Q9NY93 547 aaKnown RBP10.6□□□□□ -0.71
SMG1-208ENST00000563448 COX16Q9P0S2 106 aa10.6□□□□□ -0.71
SMG1-208ENST00000563448 RNF14Q9UBS8 474 aa10.6□□□□□ -0.71
SMG1-208ENST00000563448 NUDT5Q9UKK9 219 aa10.6□□□□□ -0.71
SMG1-208ENST00000563448 TTC7AQ9ULT0 858 aaPredicted RBP10.6□□□□□ -0.71
SMG1-208ENST00000563448 LAMA2P24043 3122 aaKnown RBP10.59□□□□□ -0.71
SMG1-208ENST00000563448 PI4K2BG5E9Z4 385 aa10.59□□□□□ -0.71
SMG1-208ENST00000563448 PRPSAP2O60256 369 aa10.59□□□□□ -0.71
SMG1-208ENST00000563448 ZRANB2O95218 330 aaKnown RBP eCLIP10.59□□□□□ -0.71
SMG1-208ENST00000563448 GLUD1P00367 558 aa10.59□□□□□ -0.71
SMG1-208ENST00000563448 IGLV3-25P01717 112 aa10.59□□□□□ -0.71
SMG1-208ENST00000563448 RARGP13631 454 aa10.59□□□□□ -0.71
SMG1-208ENST00000563448 RDXP35241 583 aaKnown RBP10.59□□□□□ -0.71
SMG1-208ENST00000563448 CKAP4Q07065 602 aaKnown RBP10.59□□□□□ -0.71
SMG1-208ENST00000563448 NME3Q13232 169 aa10.59□□□□□ -0.71
SMG1-208ENST00000563448 PLD1Q13393 1074 aa10.59□□□□□ -0.71
SMG1-208ENST00000563448 EIF4EBP2Q13542 120 aaPredicted RBP10.59□□□□□ -0.71
SMG1-208ENST00000563448 CCDC181Q5TID7 509 aa10.59□□□□□ -0.71
SMG1-208ENST00000563448 PDE12Q6L8Q7 609 aaKnown RBP10.59□□□□□ -0.71
SMG1-208ENST00000563448 ZNF572Q7Z3I7 529 aaPredicted RBP10.59□□□□□ -0.71
SMG1-208ENST00000563448 DNAJB7Q7Z6W7 309 aaPredicted RBP10.59□□□□□ -0.71
SMG1-208ENST00000563448 RCOR2Q8IZ40 523 aa10.59□□□□□ -0.71
SMG1-208ENST00000563448 CEP112Q8N8E3 955 aa10.59□□□□□ -0.71
SMG1-208ENST00000563448 CMASQ8NFW8 434 aaPredicted RBP10.59□□□□□ -0.71
SMG1-208ENST00000563448 GDPD5Q8WTR4 605 aa10.59□□□□□ -0.71
SMG1-208ENST00000563448 ARNTL2Q8WYA1 636 aa10.59□□□□□ -0.71
SMG1-208ENST00000563448 HSPH1Q92598 858 aa10.59□□□□□ -0.71
SMG1-208ENST00000563448 CASP10Q92851 521 aa10.59□□□□□ -0.71
SMG1-208ENST00000563448 RNF25Q96BH1 459 aaPredicted RBP10.59□□□□□ -0.71
SMG1-208ENST00000563448 TRMT2BQ96GJ1 504 aaKnown RBP10.59□□□□□ -0.71
SMG1-208ENST00000563448 SLITRK1Q96PX8 696 aa10.59□□□□□ -0.71
SMG1-208ENST00000563448 HERPUD2Q9BSE4 406 aa10.59□□□□□ -0.71
SMG1-208ENST00000563448 SNRNP25Q9BV90 132 aaKnown RBP10.59□□□□□ -0.71
SMG1-208ENST00000563448 PRO3102Q9H379 93 aa10.59□□□□□ -0.71
SMG1-208ENST00000563448 SLC28A3Q9HAS3 691 aa10.59□□□□□ -0.71
SMG1-208ENST00000563448 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.59□□□□□ -0.71
SMG1-208ENST00000563448 GPATCH2LQ9NWQ4 482 aa10.59□□□□□ -0.71
SMG1-208ENST00000563448 CLIC5Q9NZA1 410 aa10.59□□□□□ -0.71
SMG1-208ENST00000563448 SFMBT1Q9UHJ3 866 aa10.59□□□□□ -0.71
SMG1-208ENST00000563448 C3orf70A6NLC5 250 aaPredicted RBP10.58□□□□□ -0.72
SMG1-208ENST00000563448 FGGP02679 453 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 C8AP07357 584 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 KDELR1P24390 212 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 PAFAH1B1P43034 410 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 PSEN1P49768 467 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 ARSEP51690 589 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 EPHB3P54753 998 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 VEPH1Q14D04 833 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 LLGL1Q15334 1064 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 CA9Q16790 459 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 BOLA3Q53S33 107 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 ZC3H12AQ5D1E8 599 aaKnown RBP10.58□□□□□ -0.72
SMG1-208ENST00000563448 ZFYVE27Q5T4F4 411 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 MSANTD2Q6P1R3 559 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 CCDC149Q6ZUS6 474 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 ADGRD2Q7Z7M1 963 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 FAM131BQ86XD5 332 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 SLC22A17Q8WUG5 538 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 OVCA2Q8WZ82 227 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 PSMG2Q969U7 264 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 MAGEB5Q9BZ81 275 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 SMOC2Q9H3U7 446 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 FAM204AQ9H8W3 233 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 ZNF334Q9HCZ1 680 aaPredicted RBP10.58□□□□□ -0.72
SMG1-208ENST00000563448 ANLNQ9NQW6 1124 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 DDIT4Q9NX09 232 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 NUP205Q92621 2012 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 LRRD1A4D1F6 860 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 PGRMC1O00264 195 aaKnown RBP10.58□□□□□ -0.72
SMG1-208ENST00000563448 MDM4O15151 490 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 IRAK2O43187 625 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 TADA3O75528 432 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 CD48P09326 243 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 EPCAMP16422 314 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 CXCR3P49682 368 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 TAF12Q16514 161 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 LONRF2Q1L5Z9 754 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 GLIPR1L2Q4G1C9 344 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 ERMARDQ5T6L9 678 aa10.58□□□□□ -0.72
SMG1-208ENST00000563448 SNX30Q5VWJ9 437 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms