RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 NNTQ13423 1086 aa13.6□□□□□ -0.23
NEDD8-208ENST00000560427 ITPRIPL2Q3MIP1 535 aa13.6□□□□□ -0.23
NEDD8-208ENST00000560427 NAA35Q5VZE5 725 aa13.6□□□□□ -0.23
NEDD8-208ENST00000560427 OLFML1Q6UWY5 402 aa13.6□□□□□ -0.23
NEDD8-208ENST00000560427 HTR3DQ70Z44 454 aa13.6□□□□□ -0.23
NEDD8-208ENST00000560427 SLC26A9Q7LBE3 791 aa13.6□□□□□ -0.23
NEDD8-208ENST00000560427 IRF2BP2Q7Z5L9 587 aa13.6□□□□□ -0.23
NEDD8-208ENST00000560427 ERICH1Q86X53 443 aa13.6□□□□□ -0.23
NEDD8-208ENST00000560427 MIB1Q86YT6 1006 aa13.6□□□□□ -0.23
NEDD8-208ENST00000560427 CPA6Q8N4T0 437 aa13.6□□□□□ -0.23
NEDD8-208ENST00000560427 NDRG1Q92597 394 aaKnown RBP13.6□□□□□ -0.23
NEDD8-208ENST00000560427 EXOC4Q96A65 974 aa13.6□□□□□ -0.23
NEDD8-208ENST00000560427 FAM149B1Q96BN6 582 aa13.6□□□□□ -0.23
NEDD8-208ENST00000560427 PLD4Q96BZ4 506 aa13.6□□□□□ -0.23
NEDD8-208ENST00000560427 C18orf8Q96DM3 657 aa13.6□□□□□ -0.23
NEDD8-208ENST00000560427 SERPINB11Q96P15 392 aa13.6□□□□□ -0.23
NEDD8-208ENST00000560427 AGPAT1Q99943 283 aa13.6□□□□□ -0.23
NEDD8-208ENST00000560427 DDX23Q9BUQ8 820 aaKnown RBP13.6□□□□□ -0.23
NEDD8-208ENST00000560427 DCLK3Q9C098 648 aa13.6□□□□□ -0.23
NEDD8-208ENST00000560427 MFSD1Q9H3U5 465 aa13.6□□□□□ -0.23
NEDD8-208ENST00000560427 GKN1Q9NS71 199 aa13.6□□□□□ -0.23
NEDD8-208ENST00000560427 TMEM51Q9NW97 253 aa13.6□□□□□ -0.23
NEDD8-208ENST00000560427 RASAL2Q9UJF2 1139 aa13.6□□□□□ -0.23
NEDD8-208ENST00000560427 CA14Q9ULX7 337 aa13.6□□□□□ -0.23
NEDD8-208ENST00000560427 CAPN11Q9UMQ6 739 aa13.6□□□□□ -0.23
NEDD8-208ENST00000560427 MRPS17Q9Y2R5 130 aaKnown RBP13.6□□□□□ -0.23
NEDD8-208ENST00000560427 BZW2Q9Y6E2 419 aaKnown RBP13.6□□□□□ -0.23
NEDD8-208ENST00000560427 MYO10Q9HD67 2058 aa13.6□□□□□ -0.23
NEDD8-208ENST00000560427 TECTAO75443 2155 aa13.59□□□□□ -0.23
NEDD8-208ENST00000560427 KRBA1A5PL33 1030 aa13.59□□□□□ -0.23
NEDD8-208ENST00000560427 CAPN9O14815 690 aa13.59□□□□□ -0.23
NEDD8-208ENST00000560427 ERBB2P04626 1255 aa13.59□□□□□ -0.23
NEDD8-208ENST00000560427 GYPCP04921 128 aa13.59□□□□□ -0.23
NEDD8-208ENST00000560427 NCAM1P13591 858 aa13.59□□□□□ -0.23
NEDD8-208ENST00000560427 CHRNB2P17787 502 aa13.59□□□□□ -0.23
NEDD8-208ENST00000560427 MMP8P22894 467 aa13.59□□□□□ -0.23
NEDD8-208ENST00000560427 NSFP46459 744 aaKnown RBP13.59□□□□□ -0.23
NEDD8-208ENST00000560427 GSCP56915 257 aaPredicted RBP13.59□□□□□ -0.23
NEDD8-208ENST00000560427 SLC6A3Q01959 620 aa13.59□□□□□ -0.23
NEDD8-208ENST00000560427 RING1Q06587 406 aa13.59□□□□□ -0.23
NEDD8-208ENST00000560427 NR1H3Q13133 447 aa13.59□□□□□ -0.23
NEDD8-208ENST00000560427 RUNX3Q13761 415 aa13.59□□□□□ -0.23
NEDD8-208ENST00000560427 EML3Q32P44 896 aa13.59□□□□□ -0.23
NEDD8-208ENST00000560427 HFE2Q6ZVN8 426 aa13.59□□□□□ -0.23
NEDD8-208ENST00000560427 RALGPS2Q86X27 583 aaPredicted RBP13.59□□□□□ -0.23
NEDD8-208ENST00000560427 VSTM4Q8IW00 320 aa13.59□□□□□ -0.23
NEDD8-208ENST00000560427 CLEC4CQ8WTT0 213 aa13.59□□□□□ -0.23
NEDD8-208ENST00000560427 EDEM1Q92611 657 aa13.59□□□□□ -0.23
NEDD8-208ENST00000560427 ZFYVE19Q96K21 471 aa13.59□□□□□ -0.23
NEDD8-208ENST00000560427 NELL2Q99435 816 aa13.59□□□□□ -0.23
NEDD8-208ENST00000560427 OSBPL6Q9BZF3 934 aa13.59□□□□□ -0.23
NEDD8-208ENST00000560427 C11orf16Q9NQ32 467 aa13.59□□□□□ -0.23
NEDD8-208ENST00000560427 HPS4Q9NQG7 708 aa13.59□□□□□ -0.23
NEDD8-208ENST00000560427 HEBP1Q9NRV9 189 aa13.59□□□□□ -0.23
NEDD8-208ENST00000560427 WDR35Q9P2L0 1181 aa13.59□□□□□ -0.23
NEDD8-208ENST00000560427 LUC7L2Q9Y383 392 aaKnown RBP13.59□□□□□ -0.23
NEDD8-208ENST00000560427 WNT6Q9Y6F9 365 aa13.59□□□□□ -0.23
NEDD8-208ENST00000560427 PIAS3Q9Y6X2 628 aa13.59□□□□□ -0.23
NEDD8-208ENST00000560427 MDM4O15151 490 aa13.58□□□□□ -0.24
NEDD8-208ENST00000560427 GREM1O60565 184 aa13.58□□□□□ -0.24
NEDD8-208ENST00000560427 DAB1O75553 588 aa13.58□□□□□ -0.24
NEDD8-208ENST00000560427 STC2O76061 302 aa13.58□□□□□ -0.24
NEDD8-208ENST00000560427 LATS1O95835 1130 aa13.58□□□□□ -0.24
NEDD8-208ENST00000560427 ADH1CP00326 375 aa13.58□□□□□ -0.24
NEDD8-208ENST00000560427 TPM1P09493 284 aa13.58□□□□□ -0.24
NEDD8-208ENST00000560427 UNGP13051 313 aaPredicted RBP13.58□□□□□ -0.24
NEDD8-208ENST00000560427 KLHL30Q0D2K2 578 aa13.58□□□□□ -0.24
NEDD8-208ENST00000560427 MTA1Q13330 715 aa13.58□□□□□ -0.24
NEDD8-208ENST00000560427 TRIP4Q15650 581 aaPredicted RBP13.58□□□□□ -0.24
NEDD8-208ENST00000560427 CLEC16AQ2KHT3 1053 aa13.58□□□□□ -0.24
NEDD8-208ENST00000560427 OR6B2Q6IFH4 312 aa13.58□□□□□ -0.24
NEDD8-208ENST00000560427 ZNF852Q6ZMS4 543 aa13.58□□□□□ -0.24
NEDD8-208ENST00000560427 Q6ZNB5 142 aa13.58□□□□□ -0.24
NEDD8-208ENST00000560427 TPRG1Q6ZUI0 275 aa13.58□□□□□ -0.24
NEDD8-208ENST00000560427 FAM183BPQ6ZVS7 135 aa13.58□□□□□ -0.24
NEDD8-208ENST00000560427 ARCQ7LC44 396 aa13.58□□□□□ -0.24
NEDD8-208ENST00000560427 PHF13Q86YI8 300 aaPredicted RBP13.58□□□□□ -0.24
NEDD8-208ENST00000560427 SUGP1Q8IWZ8 645 aaKnown RBP13.58□□□□□ -0.24
NEDD8-208ENST00000560427 FBXL6Q8N531 539 aa13.58□□□□□ -0.24
NEDD8-208ENST00000560427 TTC16Q8NEE8 873 aa13.58□□□□□ -0.24
NEDD8-208ENST00000560427 PBXIP1Q96AQ6 731 aa13.58□□□□□ -0.24
NEDD8-208ENST00000560427 SLC2A13Q96QE2 648 aa13.58□□□□□ -0.24
NEDD8-208ENST00000560427 SYT11Q9BT88 431 aa13.58□□□□□ -0.24
NEDD8-208ENST00000560427 RBSNQ9H1K0 784 aa13.58□□□□□ -0.24
NEDD8-208ENST00000560427 EBF3Q9H4W6 596 aa13.58□□□□□ -0.24
NEDD8-208ENST00000560427 ECT2Q9H8V3 914 aa13.58□□□□□ -0.24
NEDD8-208ENST00000560427 TBC1D17Q9HA65 648 aa13.58□□□□□ -0.24
NEDD8-208ENST00000560427 RRN3Q9NYV6 651 aa13.58□□□□□ -0.24
NEDD8-208ENST00000560427 GTSE1Q9NYZ3 720 aa13.58□□□□□ -0.24
NEDD8-208ENST00000560427 TJP2Q9UDY2 1190 aa13.58□□□□□ -0.24
NEDD8-208ENST00000560427 NUDT5Q9UKK9 219 aa13.58□□□□□ -0.24
NEDD8-208ENST00000560427 KANSL1LA0AUZ9 987 aa13.57□□□□□ -0.24
NEDD8-208ENST00000560427 SLC12A8A0AV02 714 aa13.57□□□□□ -0.24
NEDD8-208ENST00000560427 SPECC1L-ADORA2AF8WAN1 911 aa13.57□□□□□ -0.24
NEDD8-208ENST00000560427 CALB1P05937 261 aa13.57□□□□□ -0.24
NEDD8-208ENST00000560427 FYNP06241 537 aa13.57□□□□□ -0.24
NEDD8-208ENST00000560427 IRF1P10914 325 aa13.57□□□□□ -0.24
NEDD8-208ENST00000560427 HNRNPH3P31942 346 aaKnown RBP13.57□□□□□ -0.24
NEDD8-208ENST00000560427 CTHP32929 405 aa13.57□□□□□ -0.24
NEDD8-208ENST00000560427 MAGEA9P43362 315 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms