RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 CAND1Q86VP6 1230 aaKnown RBP16.86■□□□□ 0.29
SHMT2-231ENST00000557433 NDUFAF2Q8N183 169 aa16.86■□□□□ 0.29
SHMT2-231ENST00000557433 TTC39CQ8N584 583 aa16.86■□□□□ 0.29
SHMT2-231ENST00000557433 PLD5Q8N7P1 536 aa16.86■□□□□ 0.29
SHMT2-231ENST00000557433 AZIN2Q96A70 460 aa16.86■□□□□ 0.29
SHMT2-231ENST00000557433 S100A14Q9HCY8 104 aa16.86■□□□□ 0.29
SHMT2-231ENST00000557433 ZBTB12Q9Y330 459 aaPredicted RBP16.86■□□□□ 0.29
SHMT2-231ENST00000557433 DOCK5Q9H7D0 1870 aa16.86■□□□□ 0.29
SHMT2-231ENST00000557433 CXorf49A8MYA2 514 aaPredicted RBP16.86■□□□□ 0.29
SHMT2-231ENST00000557433 DPYSL4O14531 572 aa16.86■□□□□ 0.29
SHMT2-231ENST00000557433 PRKCBP05771 671 aa16.86■□□□□ 0.29
SHMT2-231ENST00000557433 VDRP11473 427 aa16.86■□□□□ 0.29
SHMT2-231ENST00000557433 P4HA1P13674 534 aa16.86■□□□□ 0.29
SHMT2-231ENST00000557433 PROZP22891 400 aa16.86■□□□□ 0.29
SHMT2-231ENST00000557433 ATICP31939 592 aa16.86■□□□□ 0.29
SHMT2-231ENST00000557433 CLCN2P51788 898 aa16.86■□□□□ 0.29
SHMT2-231ENST00000557433 CDC16Q13042 620 aa16.86■□□□□ 0.29
SHMT2-231ENST00000557433 KRT81Q14533 505 aa16.86■□□□□ 0.29
SHMT2-231ENST00000557433 MAP3K21Q5TCX8 1036 aa16.86■□□□□ 0.29
SHMT2-231ENST00000557433 FOXB2Q5VYV0 432 aa16.86■□□□□ 0.29
SHMT2-231ENST00000557433 SLC9A4Q6AI14 798 aa16.86■□□□□ 0.29
SHMT2-231ENST00000557433 MPZL3Q6UWV2 235 aa16.86■□□□□ 0.29
SHMT2-231ENST00000557433 PIWIL2Q8TC59 973 aaKnown RBP16.86■□□□□ 0.29
SHMT2-231ENST00000557433 FAM172AQ8WUF8 416 aa16.86■□□□□ 0.29
SHMT2-231ENST00000557433 TEPSINQ96N21 525 aa16.86■□□□□ 0.29
SHMT2-231ENST00000557433 EBNA1BP2Q99848 306 aaKnown RBP16.86■□□□□ 0.29
SHMT2-231ENST00000557433 MECRQ9BV79 373 aa16.86■□□□□ 0.29
SHMT2-231ENST00000557433 PIDD1Q9HB75 910 aa16.86■□□□□ 0.29
SHMT2-231ENST00000557433 KIAA1257Q9ULG3 409 aa16.86■□□□□ 0.29
SHMT2-231ENST00000557433 PCDHA11Q9Y5I1 949 aa16.86■□□□□ 0.29
SHMT2-231ENST00000557433 C2CD4BA6NLJ0 364 aa16.85■□□□□ 0.29
SHMT2-231ENST00000557433 PRR5-ARHGAP8B1AHC4 643 aa16.85■□□□□ 0.29
SHMT2-231ENST00000557433 MAP3K13O43283 966 aa16.85■□□□□ 0.29
SHMT2-231ENST00000557433 AVILO75366 819 aa16.85■□□□□ 0.29
SHMT2-231ENST00000557433 MICAL2O94851 1124 aa16.85■□□□□ 0.29
SHMT2-231ENST00000557433 CPOXP36551 454 aa16.85■□□□□ 0.29
SHMT2-231ENST00000557433 BCAR1P56945 870 aa16.85■□□□□ 0.29
SHMT2-231ENST00000557433 INHBEP58166 350 aa16.85■□□□□ 0.29
SHMT2-231ENST00000557433 ARHGAP8P85298 464 aa16.85■□□□□ 0.29
SHMT2-231ENST00000557433 ASPHQ12797 758 aa16.85■□□□□ 0.29
SHMT2-231ENST00000557433 MTM1Q13496 603 aa16.85■□□□□ 0.29
SHMT2-231ENST00000557433 TAF5Q15542 800 aa16.85■□□□□ 0.29
SHMT2-231ENST00000557433 FAM102AQ5T9C2 384 aaPredicted RBP16.85■□□□□ 0.29
SHMT2-231ENST00000557433 SCARA3Q6AZY7 606 aa16.85■□□□□ 0.29
SHMT2-231ENST00000557433 NPNTQ6UXI9 565 aa16.85■□□□□ 0.29
SHMT2-231ENST00000557433 UNC5AQ6ZN44 842 aa16.85■□□□□ 0.29
SHMT2-231ENST00000557433 TSHZ1Q6ZSZ6 1077 aa16.85■□□□□ 0.29
SHMT2-231ENST00000557433 DHDDSQ86SQ9 333 aa16.85■□□□□ 0.29
SHMT2-231ENST00000557433 PPP1R14CQ8TAE6 165 aa16.85■□□□□ 0.29
SHMT2-231ENST00000557433 PRPF31Q8WWY3 499 aaKnown RBP16.85■□□□□ 0.29
SHMT2-231ENST00000557433 ATP2A3Q93084 1043 aa16.85■□□□□ 0.29
SHMT2-231ENST00000557433 TMEM176AQ96HP8 235 aa16.85■□□□□ 0.29
SHMT2-231ENST00000557433 PEBP4Q96S96 227 aa16.85■□□□□ 0.29
SHMT2-231ENST00000557433 SLC13A1Q9BZW2 595 aa16.85■□□□□ 0.29
SHMT2-231ENST00000557433 VRTNQ9H8Y1 702 aa16.85■□□□□ 0.29
SHMT2-231ENST00000557433 IFT122Q9HBG6 1241 aa16.85■□□□□ 0.29
SHMT2-231ENST00000557433 NDUFA13Q9P0J0 144 aa16.85■□□□□ 0.29
SHMT2-231ENST00000557433 TJP2Q9UDY2 1190 aa16.85■□□□□ 0.29
SHMT2-231ENST00000557433 APOBEC2Q9Y235 224 aaKnown RBP16.85■□□□□ 0.29
SHMT2-231ENST00000557433 A0A088AWK7 358 aa16.84■□□□□ 0.29
SHMT2-231ENST00000557433 DCAF8L1A6NGE4 600 aa16.84■□□□□ 0.29
SHMT2-231ENST00000557433 BUD23O43709 281 aaKnown RBP16.84■□□□□ 0.29
SHMT2-231ENST00000557433 GLRA3O75311 464 aa16.84■□□□□ 0.29
SHMT2-231ENST00000557433 CILPO75339 1184 aa16.84■□□□□ 0.29
SHMT2-231ENST00000557433 ZFXP17010 805 aaPredicted RBP16.84■□□□□ 0.29
SHMT2-231ENST00000557433 GRK2P25098 689 aa16.84■□□□□ 0.29
SHMT2-231ENST00000557433 GPD2P43304 727 aa16.84■□□□□ 0.29
SHMT2-231ENST00000557433 ALDH18A1P54886 795 aaKnown RBP16.84■□□□□ 0.29
SHMT2-231ENST00000557433 POLE2P56282 527 aa16.84■□□□□ 0.29
SHMT2-231ENST00000557433 SP2Q02086 613 aa16.84■□□□□ 0.29
SHMT2-231ENST00000557433 BTKQ06187 659 aa16.84■□□□□ 0.29
SHMT2-231ENST00000557433 CUL3Q13618 768 aa16.84■□□□□ 0.29
SHMT2-231ENST00000557433 CYP4V2Q6ZWL3 525 aaPredicted RBP16.84■□□□□ 0.29
SHMT2-231ENST00000557433 SDCCAG8Q86SQ7 713 aaPredicted RBP16.84■□□□□ 0.29
SHMT2-231ENST00000557433 NCAPG2Q86XI2 1143 aa16.84■□□□□ 0.29
SHMT2-231ENST00000557433 PHC3Q8NDX5 983 aa16.84■□□□□ 0.29
SHMT2-231ENST00000557433 AFG1LQ8WV93 481 aa16.84■□□□□ 0.29
SHMT2-231ENST00000557433 NLRP4Q96MN2 994 aa16.84■□□□□ 0.29
SHMT2-231ENST00000557433 ZNF670Q9BS34 389 aa16.84■□□□□ 0.29
SHMT2-231ENST00000557433 PCMTD2Q9NV79 361 aa16.84■□□□□ 0.29
SHMT2-231ENST00000557433 DNAJC28Q9NX36 388 aa16.84■□□□□ 0.29
SHMT2-231ENST00000557433 NXF1Q9UBU9 619 aaKnown RBP16.84■□□□□ 0.29
SHMT2-231ENST00000557433 TBC1D30Q9Y2I9 924 aa16.84■□□□□ 0.29
SHMT2-231ENST00000557433 FER1L6Q2WGJ9 1857 aa16.84■□□□□ 0.29
SHMT2-231ENST00000557433 GCATO75600 419 aa16.84■□□□□ 0.29
SHMT2-231ENST00000557433 BAG2O95816 211 aa16.84■□□□□ 0.29
SHMT2-231ENST00000557433 APRTP07741 180 aa16.84■□□□□ 0.29
SHMT2-231ENST00000557433 PRDX6P30041 224 aa16.84■□□□□ 0.29
SHMT2-231ENST00000557433 COPAP53621 1224 aa16.84■□□□□ 0.29
SHMT2-231ENST00000557433 MMRN1Q13201 1228 aa16.84■□□□□ 0.29
SHMT2-231ENST00000557433 BIRC2Q13490 618 aa16.84■□□□□ 0.29
SHMT2-231ENST00000557433 DGKZQ13574 1117 aa16.84■□□□□ 0.29
SHMT2-231ENST00000557433 STILQ15468 1287 aa16.84■□□□□ 0.29
SHMT2-231ENST00000557433 PDSS2Q86YH6 399 aa16.84■□□□□ 0.29
SHMT2-231ENST00000557433 CCNJLQ8IV13 435 aa16.84■□□□□ 0.29
SHMT2-231ENST00000557433 NME8Q8N427 588 aa16.84■□□□□ 0.29
SHMT2-231ENST00000557433 OR6Y1Q8NGX8 325 aa16.84■□□□□ 0.29
SHMT2-231ENST00000557433 FBXO27Q8NI29 283 aa16.84■□□□□ 0.29
SHMT2-231ENST00000557433 SIGLEC10Q96LC7 697 aa16.84■□□□□ 0.29
SHMT2-231ENST00000557433 TTC1Q99614 292 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms