RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 BIRC3Q13489 604 aa12.51□□□□□ -0.41
CKAP4-202ENST00000552828 DUOXA1Q1HG43 343 aa12.51□□□□□ -0.41
CKAP4-202ENST00000552828 SGSM1Q2NKQ1 1148 aa12.51□□□□□ -0.41
CKAP4-202ENST00000552828 ANO4Q32M45 955 aa12.51□□□□□ -0.41
CKAP4-202ENST00000552828 C10orf76Q5T2E6 689 aa12.51□□□□□ -0.41
CKAP4-202ENST00000552828 RABEPKQ7Z6M1 372 aa12.51□□□□□ -0.41
CKAP4-202ENST00000552828 ACOT1Q86TX2 421 aa12.51□□□□□ -0.41
CKAP4-202ENST00000552828 UNC93AQ86WB7 457 aa12.51□□□□□ -0.41
CKAP4-202ENST00000552828 SLC2A14Q8TDB8 520 aa12.51□□□□□ -0.41
CKAP4-202ENST00000552828 TAF4BQ92750 862 aa12.51□□□□□ -0.41
CKAP4-202ENST00000552828 GABRG3Q99928 467 aa12.51□□□□□ -0.41
CKAP4-202ENST00000552828 KLF16Q9BXK1 252 aaPredicted RBP12.51□□□□□ -0.41
CKAP4-202ENST00000552828 GTPBP4Q9BZE4 634 aaKnown RBP12.51□□□□□ -0.41
CKAP4-202ENST00000552828 CYLDQ9NQC7 956 aa12.51□□□□□ -0.41
CKAP4-202ENST00000552828 KRT82Q9NSB4 513 aa12.51□□□□□ -0.41
CKAP4-202ENST00000552828 CALCOCO1Q9P1Z2 691 aa12.51□□□□□ -0.41
CKAP4-202ENST00000552828 WDR35Q9P2L0 1181 aa12.51□□□□□ -0.41
CKAP4-202ENST00000552828 NEUROG3Q9Y4Z2 214 aa12.51□□□□□ -0.41
CKAP4-202ENST00000552828 PCDHA5Q9Y5H7 936 aa12.51□□□□□ -0.41
CKAP4-202ENST00000552828 ITPR1Q14643 2758 aa12.51□□□□□ -0.41
CKAP4-202ENST00000552828 FREM2Q5SZK8 3169 aa12.51□□□□□ -0.41
CKAP4-202ENST00000552828 FAM221BA6H8Z2 402 aa12.5□□□□□ -0.41
CKAP4-202ENST00000552828 ZNF217O75362 1048 aa12.5□□□□□ -0.41
CKAP4-202ENST00000552828 TBX18O95935 607 aa12.5□□□□□ -0.41
CKAP4-202ENST00000552828 P4HA1P13674 534 aa12.5□□□□□ -0.41
CKAP4-202ENST00000552828 HOXB2P14652 356 aa12.5□□□□□ -0.41
CKAP4-202ENST00000552828 GFPT1Q06210 699 aaPredicted RBP12.5□□□□□ -0.41
CKAP4-202ENST00000552828 ZNF33AQ06730 810 aa12.5□□□□□ -0.41
CKAP4-202ENST00000552828 ZACNQ401N2 412 aa12.5□□□□□ -0.41
CKAP4-202ENST00000552828 EGFLAMQ63HQ2 1017 aa12.5□□□□□ -0.41
CKAP4-202ENST00000552828 GRAMD4Q6IC98 578 aa12.5□□□□□ -0.41
CKAP4-202ENST00000552828 KLHDC10Q6PID8 442 aa12.5□□□□□ -0.41
CKAP4-202ENST00000552828 GUF1Q8N442 669 aaKnown RBP12.5□□□□□ -0.41
CKAP4-202ENST00000552828 SPATA20Q8TB22 786 aa12.5□□□□□ -0.41
CKAP4-202ENST00000552828 ERCC4Q92889 916 aaPredicted RBP12.5□□□□□ -0.41
CKAP4-202ENST00000552828 NACA2Q9H009 215 aa12.5□□□□□ -0.41
CKAP4-202ENST00000552828 TLR8Q9NR97 1041 aaKnown RBP12.5□□□□□ -0.41
CKAP4-202ENST00000552828 RALYQ9UKM9 306 aaKnown RBP12.5□□□□□ -0.41
CKAP4-202ENST00000552828 SCML2Q9UQR0 700 aa12.5□□□□□ -0.41
CKAP4-202ENST00000552828 MSRB2Q9Y3D2 182 aa12.5□□□□□ -0.41
CKAP4-202ENST00000552828 PLXND1Q9Y4D7 1925 aa12.5□□□□□ -0.41
CKAP4-202ENST00000552828 CACNA1EQ15878 2313 aa12.49□□□□□ -0.41
CKAP4-202ENST00000552828 ASCC3Q8N3C0 2202 aaKnown RBP12.49□□□□□ -0.41
CKAP4-202ENST00000552828 TNRC6BQ9UPQ9 1833 aaKnown RBP12.49□□□□□ -0.41
CKAP4-202ENST00000552828 ATXN2Q99700 1313 aaKnown RBP12.49□□□□□ -0.41
CKAP4-202ENST00000552828 IGHV1OR15-9A0A0B4J2B8 117 aa12.49□□□□□ -0.41
CKAP4-202ENST00000552828 PRRT4C9JH25 899 aa12.49□□□□□ -0.41
CKAP4-202ENST00000552828 HHLA1C9JL84 531 aa12.49□□□□□ -0.41
CKAP4-202ENST00000552828 GFRA2O00451 464 aa12.49□□□□□ -0.41
CKAP4-202ENST00000552828 PDXKO00764 312 aa12.49□□□□□ -0.41
CKAP4-202ENST00000552828 ARHGAP33O14559 1287 aa12.49□□□□□ -0.41
CKAP4-202ENST00000552828 IKBKBO14920 756 aa12.49□□□□□ -0.41
CKAP4-202ENST00000552828 CALUO43852 315 aaPredicted RBP12.49□□□□□ -0.41
CKAP4-202ENST00000552828 ASS1P00966 412 aaKnown RBP12.49□□□□□ -0.41
CKAP4-202ENST00000552828 CFIP05156 583 aa12.49□□□□□ -0.41
CKAP4-202ENST00000552828 CISD3P0C7P0 127 aa12.49□□□□□ -0.41
CKAP4-202ENST00000552828 CCDC130P13994 396 aa12.49□□□□□ -0.41
CKAP4-202ENST00000552828 TYRP14679 529 aa12.49□□□□□ -0.41
CKAP4-202ENST00000552828 NDUFV2P19404 249 aa12.49□□□□□ -0.41
CKAP4-202ENST00000552828 ATP5C1P36542 298 aaKnown RBP12.49□□□□□ -0.41
CKAP4-202ENST00000552828 NDST1P52848 882 aa12.49□□□□□ -0.41
CKAP4-202ENST00000552828 MAP3K7CLP57077 242 aa12.49□□□□□ -0.41
CKAP4-202ENST00000552828 ZNF658Q5TYW1 1059 aaPredicted RBP12.49□□□□□ -0.41
CKAP4-202ENST00000552828 SDE2Q6IQ49 451 aa12.49□□□□□ -0.41
CKAP4-202ENST00000552828 SCARA5Q6ZMJ2 495 aa12.49□□□□□ -0.41
CKAP4-202ENST00000552828 SLC41A1Q8IVJ1 513 aa12.49□□□□□ -0.41
CKAP4-202ENST00000552828 ZNF276Q8N554 614 aa12.49□□□□□ -0.41
CKAP4-202ENST00000552828 C12orf29Q8N999 325 aa12.49□□□□□ -0.41
CKAP4-202ENST00000552828 TMC2Q8TDI7 906 aa12.49□□□□□ -0.41
CKAP4-202ENST00000552828 IPO4Q8TEX9 1081 aaKnown RBP12.49□□□□□ -0.41
CKAP4-202ENST00000552828 ELMO3Q96BJ8 720 aa12.49□□□□□ -0.41
CKAP4-202ENST00000552828 ZNF419Q96HQ0 510 aaPredicted RBP12.49□□□□□ -0.41
CKAP4-202ENST00000552828 XPO6Q96QU8 1125 aaKnown RBP12.49□□□□□ -0.41
CKAP4-202ENST00000552828 ACOX2Q99424 681 aa12.49□□□□□ -0.41
CKAP4-202ENST00000552828 HNRNPABQ99729 332 aaKnown RBP12.49□□□□□ -0.41
CKAP4-202ENST00000552828 BBS2Q9BXC9 721 aa12.49□□□□□ -0.41
CKAP4-202ENST00000552828 KCTD10Q9H3F6 313 aa12.49□□□□□ -0.41
CKAP4-202ENST00000552828 PNPLA8Q9NP80 782 aa12.49□□□□□ -0.41
CKAP4-202ENST00000552828 LMBRD1Q9NUN5 540 aa12.49□□□□□ -0.41
CKAP4-202ENST00000552828 DNAJC17Q9NVM6 304 aaKnown RBP12.49□□□□□ -0.41
CKAP4-202ENST00000552828 DNAAF2Q9NVR5 837 aaKnown RBP12.49□□□□□ -0.41
CKAP4-202ENST00000552828 OSER1Q9NX31 292 aa12.49□□□□□ -0.41
CKAP4-202ENST00000552828 HMGXB4Q9UGU5 601 aa12.49□□□□□ -0.41
CKAP4-202ENST00000552828 FBXO10Q9UK96 956 aa12.49□□□□□ -0.41
CKAP4-202ENST00000552828 MAPK8IP1Q9UQF2 711 aa12.49□□□□□ -0.41
CKAP4-202ENST00000552828 GON4LQ3T8J9 2241 aa12.49□□□□□ -0.41
CKAP4-202ENST00000552828 ANKRD11Q6UB99 2663 aaPredicted RBP12.48□□□□□ -0.41
CKAP4-202ENST00000552828 SPAARA0A1B0GVQ0 90 aa12.48□□□□□ -0.41
CKAP4-202ENST00000552828 SRRM3A6NNA2 597 aaPredicted RBP12.48□□□□□ -0.41
CKAP4-202ENST00000552828 NEDD8-MDP1E9PL57 170 aa12.48□□□□□ -0.41
CKAP4-202ENST00000552828 H0Y626 953 aa12.48□□□□□ -0.41
CKAP4-202ENST00000552828 ZBTB24O43167 697 aaPredicted RBP12.48□□□□□ -0.41
CKAP4-202ENST00000552828 HYAL3O43820 417 aaPredicted RBP12.48□□□□□ -0.41
CKAP4-202ENST00000552828 OPHN1O60890 802 aa12.48□□□□□ -0.41
CKAP4-202ENST00000552828 TRIM16O95361 564 aa12.48□□□□□ -0.41
CKAP4-202ENST00000552828 IRF1P10914 325 aa12.48□□□□□ -0.41
CKAP4-202ENST00000552828 CD59P13987 128 aa12.48□□□□□ -0.41
CKAP4-202ENST00000552828 WASP42768 502 aa12.48□□□□□ -0.41
CKAP4-202ENST00000552828 ASPAP45381 313 aa12.48□□□□□ -0.41
CKAP4-202ENST00000552828 ATXN3P54252 364 aaPredicted RBP12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms