RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 LRRC43Q8N309 656 aa16.19■□□□□ 0.18
CUX1-211ENST00000546411 PDZD8Q8NEN9 1154 aa16.19■□□□□ 0.18
CUX1-211ENST00000546411 NDRG1Q92597 394 aaKnown RBP16.19■□□□□ 0.18
CUX1-211ENST00000546411 GPR20Q99678 358 aa16.19■□□□□ 0.18
CUX1-211ENST00000546411 CYP4F12Q9HCS2 524 aa16.19■□□□□ 0.18
CUX1-211ENST00000546411 IARS2Q9NSE4 1012 aaKnown RBP16.19■□□□□ 0.18
CUX1-211ENST00000546411 SOWAHBA6NEL2 793 aa16.18■□□□□ 0.18
CUX1-211ENST00000546411 NFKBIEO00221 500 aa16.18■□□□□ 0.18
CUX1-211ENST00000546411 RNF103O00237 685 aa16.18■□□□□ 0.18
CUX1-211ENST00000546411 SHOX2O60902 331 aaPredicted RBP16.18■□□□□ 0.18
CUX1-211ENST00000546411 POU6F1Q14863 301 aa16.18■□□□□ 0.18
CUX1-211ENST00000546411 MGAT5BQ3V5L5 792 aa16.18■□□□□ 0.18
CUX1-211ENST00000546411 NLGN2Q8NFZ4 835 aa16.18■□□□□ 0.18
CUX1-211ENST00000546411 HTR3CQ8WXA8 447 aa16.18■□□□□ 0.18
CUX1-211ENST00000546411 C18orf25Q96B23 403 aaPredicted RBP16.18■□□□□ 0.18
CUX1-211ENST00000546411 E9PBE3 544 aa16.18■□□□□ 0.18
CUX1-211ENST00000546411 NVLO15381 856 aaKnown RBP16.18■□□□□ 0.18
CUX1-211ENST00000546411 KLHL41O60662 606 aa16.18■□□□□ 0.18
CUX1-211ENST00000546411 THP07101 528 aa16.18■□□□□ 0.18
CUX1-211ENST00000546411 GFAPP14136 432 aa16.18■□□□□ 0.18
CUX1-211ENST00000546411 ITGA9Q13797 1035 aa16.18■□□□□ 0.18
CUX1-211ENST00000546411 POTEAQ6S8J7 498 aa16.18■□□□□ 0.18
CUX1-211ENST00000546411 BBS12Q6ZW61 710 aa16.18■□□□□ 0.18
CUX1-211ENST00000546411 IFNEQ86WN2 208 aa16.18■□□□□ 0.18
CUX1-211ENST00000546411 C1orf127Q8N9H9 656 aa16.18■□□□□ 0.18
CUX1-211ENST00000546411 DNAJC9Q8WXX5 260 aa16.18■□□□□ 0.18
CUX1-211ENST00000546411 LGMNQ99538 433 aa16.18■□□□□ 0.18
CUX1-211ENST00000546411 KATNAL1Q9BW62 490 aa16.18■□□□□ 0.18
CUX1-211ENST00000546411 SLC38A7Q9NVC3 462 aa16.18■□□□□ 0.18
CUX1-211ENST00000546411 KAT6AQ92794 2004 aa16.18■□□□□ 0.18
CUX1-211ENST00000546411 ACVR2BQ13705 512 aa16.18■□□□□ 0.18
CUX1-211ENST00000546411 EFHBQ8N7U6 833 aa16.18■□□□□ 0.18
CUX1-211ENST00000546411 PPHLN1Q8NEY8 458 aaKnown RBP16.18■□□□□ 0.18
CUX1-211ENST00000546411 ABHD16BQ9H3Z7 469 aa16.18■□□□□ 0.18
CUX1-211ENST00000546411 ARHGEF38Q9NXL2 777 aa16.18■□□□□ 0.18
CUX1-211ENST00000546411 LAMB4A4D0S4 1761 aa16.18■□□□□ 0.18
CUX1-211ENST00000546411 CLDN5O00501 218 aa16.18■□□□□ 0.18
CUX1-211ENST00000546411 VNN1O95497 513 aa16.18■□□□□ 0.18
CUX1-211ENST00000546411 ZNF143P52747 638 aaPredicted RBP16.18■□□□□ 0.18
CUX1-211ENST00000546411 TRIP10Q15642 601 aa16.18■□□□□ 0.18
CUX1-211ENST00000546411 NTPCRQ9BSD7 190 aaKnown RBP16.18■□□□□ 0.18
CUX1-211ENST00000546411 TRUB2O95900 331 aaKnown RBP16.17■□□□□ 0.18
CUX1-211ENST00000546411 CPT1AP50416 773 aa16.17■□□□□ 0.18
CUX1-211ENST00000546411 ELF3P78545 371 aaPredicted RBP16.17■□□□□ 0.18
CUX1-211ENST00000546411 N4BP2L1Q5TBK1 243 aaPredicted RBP16.17■□□□□ 0.18
CUX1-211ENST00000546411 ZNF572Q7Z3I7 529 aaPredicted RBP16.17■□□□□ 0.18
CUX1-211ENST00000546411 RNF157Q96PX1 679 aa16.17■□□□□ 0.18
CUX1-211ENST00000546411 FRMD8Q9BZ67 464 aaPredicted RBP16.17■□□□□ 0.18
CUX1-211ENST00000546411 TRPV6Q9H1D0 765 aa16.17■□□□□ 0.18
CUX1-211ENST00000546411 NXF3Q9H4D5 531 aaKnown RBP16.17■□□□□ 0.18
CUX1-211ENST00000546411 GBA2Q9HCG7 927 aaPredicted RBP16.17■□□□□ 0.18
CUX1-211ENST00000546411 ENO4A6NNW6 628 aa16.17■□□□□ 0.18
CUX1-211ENST00000546411 USP2O75604 605 aaPredicted RBP16.17■□□□□ 0.18
CUX1-211ENST00000546411 GHRP10912 638 aa16.17■□□□□ 0.18
CUX1-211ENST00000546411 ARL2P36404 184 aa16.17■□□□□ 0.18
CUX1-211ENST00000546411 SERPINB5P36952 375 aa16.17■□□□□ 0.18
CUX1-211ENST00000546411 WSCD1Q658N2 575 aa16.17■□□□□ 0.18
CUX1-211ENST00000546411 GLB1LQ6UWU2 654 aa16.17■□□□□ 0.18
CUX1-211ENST00000546411 TLK2Q86UE8 772 aa16.17■□□□□ 0.18
CUX1-211ENST00000546411 OSBPL7Q9BZF2 842 aa16.17■□□□□ 0.18
CUX1-211ENST00000546411 COQ4Q9Y3A0 265 aa16.17■□□□□ 0.18
CUX1-211ENST00000546411 FCHO1O14526 889 aa16.17■□□□□ 0.18
CUX1-211ENST00000546411 USP17L7P0C7H9 530 aa16.17■□□□□ 0.18
CUX1-211ENST00000546411 UBTFL6P0CB48 400 aaPredicted RBP16.17■□□□□ 0.18
CUX1-211ENST00000546411 ERVK-10P10266 1014 aa16.17■□□□□ 0.18
CUX1-211ENST00000546411 MTFR1Q15390 333 aa16.17■□□□□ 0.18
CUX1-211ENST00000546411 LRRC38Q5VT99 294 aa16.17■□□□□ 0.18
CUX1-211ENST00000546411 URGCPQ8TCY9 931 aa16.17■□□□□ 0.18
CUX1-211ENST00000546411 TSC22D3Q99576 134 aa16.17■□□□□ 0.18
CUX1-211ENST00000546411 SYT15Q9BQS2 421 aa16.17■□□□□ 0.18
CUX1-211ENST00000546411 FRMD8P1Q9BZ68 369 aaPredicted RBP16.17■□□□□ 0.18
CUX1-211ENST00000546411 GRIN2DO15399 1336 aa16.17■□□□□ 0.18
CUX1-211ENST00000546411 MYPNQ86TC9 1320 aa16.17■□□□□ 0.18
CUX1-211ENST00000546411 DNM1LO00429 736 aa16.16■□□□□ 0.18
CUX1-211ENST00000546411 UNGP13051 313 aaPredicted RBP16.16■□□□□ 0.18
CUX1-211ENST00000546411 ANKRD22Q5VYY1 191 aa16.16■□□□□ 0.18
CUX1-211ENST00000546411 TFAP2DQ7Z6R9 452 aa16.16■□□□□ 0.18
CUX1-211ENST00000546411 PIGZQ86VD9 579 aa16.16■□□□□ 0.18
CUX1-211ENST00000546411 CYP4X1Q8N118 509 aa16.16■□□□□ 0.18
CUX1-211ENST00000546411 TEX9Q8N6V9 391 aa16.16■□□□□ 0.18
CUX1-211ENST00000546411 MECRQ9BV79 373 aa16.16■□□□□ 0.18
CUX1-211ENST00000546411 ULBP1Q9BZM6 244 aa16.16■□□□□ 0.18
CUX1-211ENST00000546411 FDFT1P37268 417 aa16.16■□□□□ 0.18
CUX1-211ENST00000546411 PRRC2BQ5JSZ5 2229 aaKnown RBP16.16■□□□□ 0.18
CUX1-211ENST00000546411 SPDYCQ5MJ68 293 aa16.16■□□□□ 0.18
CUX1-211ENST00000546411 SH3PXD2AQ5TCZ1 1133 aa16.16■□□□□ 0.18
CUX1-211ENST00000546411 TAS2R42Q7RTR8 314 aa16.16■□□□□ 0.18
CUX1-211ENST00000546411 CENPTQ96BT3 561 aa16.16■□□□□ 0.18
CUX1-211ENST00000546411 PGLYRP2Q96PD5 576 aa16.16■□□□□ 0.18
CUX1-211ENST00000546411 MRPL45Q9BRJ2 306 aaKnown RBP16.16■□□□□ 0.18
CUX1-211ENST00000546411 EFHD1Q9BUP0 239 aa16.16■□□□□ 0.18
CUX1-211ENST00000546411 ELOVL4Q9GZR5 314 aa16.16■□□□□ 0.18
CUX1-211ENST00000546411 FAM96AQ9H5X1 160 aa16.16■□□□□ 0.18
CUX1-211ENST00000546411 IL1RL2Q9HB29 575 aa16.16■□□□□ 0.18
CUX1-211ENST00000546411 ZDHHC18Q9NUE0 388 aa16.16■□□□□ 0.18
CUX1-211ENST00000546411 MAFBQ9Y5Q3 323 aaPredicted RBP16.16■□□□□ 0.18
CUX1-211ENST00000546411 CNTNAP1P78357 1384 aa16.16■□□□□ 0.18
CUX1-211ENST00000546411 C2CD2LO14523 706 aa16.16■□□□□ 0.18
CUX1-211ENST00000546411 FAM155BO75949 473 aa16.16■□□□□ 0.18
CUX1-211ENST00000546411 S100BP04271 92 aaPredicted RBP16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms