RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 LRRTM3Q86VH5 581 aa15.11■□□□□ 0.01
CLIP1-216ENST00000541410 TMEM86AQ8N2M4 240 aa15.11■□□□□ 0.01
CLIP1-216ENST00000541410 STKLD1Q8NE28 680 aa15.11■□□□□ 0.01
CLIP1-216ENST00000541410 OR10T2Q8NGX3 314 aa15.11■□□□□ 0.01
CLIP1-216ENST00000541410 TEKT4Q8WW24 435 aa15.11■□□□□ 0.01
CLIP1-216ENST00000541410 ZMYND15Q9H091 742 aa15.11■□□□□ 0.01
CLIP1-216ENST00000541410 CWC15Q9P013 229 aaKnown RBP15.11■□□□□ 0.01
CLIP1-216ENST00000541410 NUP205Q92621 2012 aa15.11■□□□□ 0.01
CLIP1-216ENST00000541410 CREB3O43889 395 aa15.1■□□□□ 0.01
CLIP1-216ENST00000541410 DDHD2O94830 711 aa15.1■□□□□ 0.01
CLIP1-216ENST00000541410 FYNP06241 537 aa15.1■□□□□ 0.01
CLIP1-216ENST00000541410 RPL9P32969 192 aaKnown RBP15.1■□□□□ 0.01
CLIP1-216ENST00000541410 SLC25A52Q3SY17 297 aa15.1■□□□□ 0.01
CLIP1-216ENST00000541410 TRAF7Q6Q0C0 670 aa15.1■□□□□ 0.01
CLIP1-216ENST00000541410 CYP4X1Q8N118 509 aa15.1■□□□□ 0.01
CLIP1-216ENST00000541410 SLC7A14Q8TBB6 771 aa15.1■□□□□ 0.01
CLIP1-216ENST00000541410 MYCBPAPQ8TBZ2 947 aa15.1■□□□□ 0.01
CLIP1-216ENST00000541410 LINC01599Q8WXQ3 324 aa15.1■□□□□ 0.01
CLIP1-216ENST00000541410 PGM2Q96G03 612 aa15.1■□□□□ 0.01
CLIP1-216ENST00000541410 VPS37BQ9H9H4 285 aa15.1■□□□□ 0.01
CLIP1-216ENST00000541410 PIGVQ9NUD9 493 aa15.1■□□□□ 0.01
CLIP1-216ENST00000541410 FARP1Q9Y4F1 1045 aaPredicted RBP15.1■□□□□ 0.01
CLIP1-216ENST00000541410 CAPN9O14815 690 aa15.1■□□□□ 0.01
CLIP1-216ENST00000541410 ODC1P11926 461 aa15.1■□□□□ 0.01
CLIP1-216ENST00000541410 VEGFBP49765 207 aa15.1■□□□□ 0.01
CLIP1-216ENST00000541410 GRIK3Q13003 919 aa15.1■□□□□ 0.01
CLIP1-216ENST00000541410 TUSC3Q13454 348 aa15.1■□□□□ 0.01
CLIP1-216ENST00000541410 PGBD4Q96DM1 585 aa15.1■□□□□ 0.01
CLIP1-216ENST00000541410 CSPG4P5Q96PW8 444 aa15.1■□□□□ 0.01
CLIP1-216ENST00000541410 HMX1Q9NP08 348 aaPredicted RBP15.1■□□□□ 0.01
CLIP1-216ENST00000541410 ANLNQ9NQW6 1124 aa15.1■□□□□ 0.01
CLIP1-216ENST00000541410 RSPH14Q9UHP6 348 aa15.1■□□□□ 0.01
CLIP1-216ENST00000541410 PRDM4Q9UKN5 801 aa15.1■□□□□ 0.01
CLIP1-216ENST00000541410 CDH9Q9ULB4 789 aa15.1■□□□□ 0.01
CLIP1-216ENST00000541410 TSC2P49815 1807 aa15.1■□□□□ 0.01
CLIP1-216ENST00000541410 NCAM1P13591 858 aa15.09■□□□□ 0.01
CLIP1-216ENST00000541410 CCT5P48643 541 aa15.09■□□□□ 0.01
CLIP1-216ENST00000541410 SF3A3Q12874 501 aaKnown RBP eCLIP15.09■□□□□ 0.01
CLIP1-216ENST00000541410 DPYSL2Q16555 572 aa15.09■□□□□ 0.01
CLIP1-216ENST00000541410 HIF1AQ16665 826 aa15.09■□□□□ 0.01
CLIP1-216ENST00000541410 CLLU1OSQ5K130 101 aa15.09■□□□□ 0.01
CLIP1-216ENST00000541410 SLC9A4Q6AI14 798 aa15.09■□□□□ 0.01
CLIP1-216ENST00000541410 ZNF598Q86UK7 904 aaKnown RBP15.09■□□□□ 0.01
CLIP1-216ENST00000541410 PPIL6Q8IXY8 311 aa15.09■□□□□ 0.01
CLIP1-216ENST00000541410 CCDC110Q8TBZ0 833 aa15.09■□□□□ 0.01
CLIP1-216ENST00000541410 ZNF296Q8WUU4 475 aaPredicted RBP15.09■□□□□ 0.01
CLIP1-216ENST00000541410 TSPYL1Q9H0U9 437 aa15.09■□□□□ 0.01
CLIP1-216ENST00000541410 USP29Q9HBJ7 922 aa15.09■□□□□ 0.01
CLIP1-216ENST00000541410 CYLDQ9NQC7 956 aa15.09■□□□□ 0.01
CLIP1-216ENST00000541410 XPO7Q9UIA9 1087 aaKnown RBP15.09■□□□□ 0.01
CLIP1-216ENST00000541410 PRG3Q9Y2Y8 225 aaPredicted RBP15.09■□□□□ 0.01
CLIP1-216ENST00000541410 E7EVH7 732 aa15.09■□□□□ 0.01
CLIP1-216ENST00000541410 POC1B-GALNT4F8VUJ3 575 aa15.09■□□□□ 0.01
CLIP1-216ENST00000541410 AVILO75366 819 aa15.09■□□□□ 0.01
CLIP1-216ENST00000541410 DAB1O75553 588 aa15.09■□□□□ 0.01
CLIP1-216ENST00000541410 CABYRO75952 493 aa15.09■□□□□ 0.01
CLIP1-216ENST00000541410 ZBED1O96006 694 aa15.09■□□□□ 0.01
CLIP1-216ENST00000541410 CHN1P15882 459 aa15.09■□□□□ 0.01
CLIP1-216ENST00000541410 SSTR1P30872 391 aa15.09■□□□□ 0.01
CLIP1-216ENST00000541410 FAM26DQ5JW98 314 aa15.09■□□□□ 0.01
CLIP1-216ENST00000541410 EXOC3L1Q86VI1 746 aa15.09■□□□□ 0.01
CLIP1-216ENST00000541410 ARFGAP2Q8N6H7 521 aa15.09■□□□□ 0.01
CLIP1-216ENST00000541410 NAT8LQ8N9F0 302 aa15.09■□□□□ 0.01
CLIP1-216ENST00000541410 SCAMP5Q8TAC9 235 aa15.09■□□□□ 0.01
CLIP1-216ENST00000541410 RSPH1Q8WYR4 309 aa15.09■□□□□ 0.01
CLIP1-216ENST00000541410 KCTD13Q8WZ19 329 aa15.09■□□□□ 0.01
CLIP1-216ENST00000541410 ZNF670Q9BS34 389 aa15.09■□□□□ 0.01
CLIP1-216ENST00000541410 POPDC2Q9HBU9 364 aa15.09■□□□□ 0.01
CLIP1-216ENST00000541410 MLXIPLQ9NP71 852 aa15.09■□□□□ 0.01
CLIP1-216ENST00000541410 DNAJB4Q9UDY4 337 aa15.09■□□□□ 0.01
CLIP1-216ENST00000541410 FZD10Q9ULW2 581 aa15.09■□□□□ 0.01
CLIP1-216ENST00000541410 MRPL42Q9Y6G3 142 aaKnown RBP15.09■□□□□ 0.01
CLIP1-216ENST00000541410 PCSK1P29120 753 aa15.08■□□□□ 0
CLIP1-216ENST00000541410 NOS2P35228 1153 aa15.08■□□□□ 0
CLIP1-216ENST00000541410 DAOAP59103 153 aa15.08■□□□□ 0
CLIP1-216ENST00000541410 DEUP1Q05D60 604 aa15.08■□□□□ 0
CLIP1-216ENST00000541410 BBS9Q3SYG4 887 aa15.08■□□□□ 0
CLIP1-216ENST00000541410 EMC10Q5UCC4 262 aa15.08■□□□□ 0
CLIP1-216ENST00000541410 OVOS1Q6IE37 1185 aa15.08■□□□□ 0
CLIP1-216ENST00000541410 STRADAQ7RTN6 431 aa15.08■□□□□ 0
CLIP1-216ENST00000541410 METTL23Q86XA0 190 aa15.08■□□□□ 0
CLIP1-216ENST00000541410 TP53INP2Q8IXH6 220 aa15.08■□□□□ 0
CLIP1-216ENST00000541410 SMARCD1Q96GM5 515 aa15.08■□□□□ 0
CLIP1-216ENST00000541410 NPY6RQ99463 290 aa15.08■□□□□ 0
CLIP1-216ENST00000541410 WDR83Q9BRX9 315 aaKnown RBP15.08■□□□□ 0
CLIP1-216ENST00000541410 RAB6BQ9NRW1 208 aa15.08■□□□□ 0
CLIP1-216ENST00000541410 HCSTQ9UBK5 93 aa15.08■□□□□ 0
CLIP1-216ENST00000541410 SHOC2Q9UQ13 582 aa15.08■□□□□ 0
CLIP1-216ENST00000541410 PTCH2Q9Y6C5 1203 aa15.08■□□□□ 0
CLIP1-216ENST00000541410 C9IYK1 514 aa15.07■□□□□ 0
CLIP1-216ENST00000541410 HHLA1C9JL84 531 aa15.07■□□□□ 0
CLIP1-216ENST00000541410 ANKRD65E5RJM6 399 aa15.07■□□□□ 0
CLIP1-216ENST00000541410 FAM72CH0Y354 149 aa15.07■□□□□ 0
CLIP1-216ENST00000541410 I6L893 689 aaPredicted RBP15.07■□□□□ 0
CLIP1-216ENST00000541410 GRK4P32298 578 aa15.07■□□□□ 0
CLIP1-216ENST00000541410 GATMP50440 423 aa15.07■□□□□ 0
CLIP1-216ENST00000541410 EFTUD2Q15029 972 aaKnown RBP eCLIP15.07■□□□□ 0
CLIP1-216ENST00000541410 INTS6LQ5JSJ4 861 aaKnown RBP15.07■□□□□ 0
CLIP1-216ENST00000541410 FAM72AQ5TYM5 149 aa15.07■□□□□ 0
CLIP1-216ENST00000541410 FAM72DQ6L9T8 149 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms