RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 TWF2Q6IBS0 349 aaKnown RBP17.56■□□□□ 0.4
USP28-208ENST00000540438 DRICH1Q6PGQ1 229 aaPredicted RBP17.56■□□□□ 0.4
USP28-208ENST00000540438 MS4A4AQ96JQ5 239 aa17.56■□□□□ 0.4
USP28-208ENST00000540438 PAAF1Q9BRP4 392 aa17.56■□□□□ 0.4
USP28-208ENST00000540438 SMIM28A0A1B0GU29 152 aa17.56■□□□□ 0.4
USP28-208ENST00000540438 GOLGA8TH3BQL2 631 aa17.56■□□□□ 0.4
USP28-208ENST00000540438 MAGEB2O15479 319 aa17.56■□□□□ 0.4
USP28-208ENST00000540438 XRCC4Q13426 336 aa17.56■□□□□ 0.4
USP28-208ENST00000540438 DGKDQ16760 1214 aa17.56■□□□□ 0.4
USP28-208ENST00000540438 DEFB106AQ8N104 65 aa17.56■□□□□ 0.4
USP28-208ENST00000540438 ARMC2Q8NEN0 867 aa17.56■□□□□ 0.4
USP28-208ENST00000540438 EDEM1Q92611 657 aa17.56■□□□□ 0.4
USP28-208ENST00000540438 TTC25Q96NG3 672 aa17.56■□□□□ 0.4
USP28-208ENST00000540438 PCMTD2Q9NV79 361 aa17.56■□□□□ 0.4
USP28-208ENST00000540438 AP4E1Q9UPM8 1137 aa17.56■□□□□ 0.4
USP28-208ENST00000540438 NR1H3Q13133 447 aa17.56■□□□□ 0.4
USP28-208ENST00000540438 EFHC2Q5JST6 749 aa17.56■□□□□ 0.4
USP28-208ENST00000540438 C9orf57Q5W0N0 161 aa17.56■□□□□ 0.4
USP28-208ENST00000540438 CAND1Q86VP6 1230 aaKnown RBP17.56■□□□□ 0.4
USP28-208ENST00000540438 CCHCR1Q8TD31 782 aa17.56■□□□□ 0.4
USP28-208ENST00000540438 MED10Q9BTT4 135 aa17.56■□□□□ 0.4
USP28-208ENST00000540438 KATNBL1Q9H079 304 aa17.56■□□□□ 0.4
USP28-208ENST00000540438 WDR35Q9P2L0 1181 aa17.56■□□□□ 0.4
USP28-208ENST00000540438 NUDT5Q9UKK9 219 aa17.56■□□□□ 0.4
USP28-208ENST00000540438 A6NJR5 290 aa17.55■□□□□ 0.4
USP28-208ENST00000540438 CSH1P0DML2 217 aa17.55■□□□□ 0.4
USP28-208ENST00000540438 CSH2P0DML3 217 aa17.55■□□□□ 0.4
USP28-208ENST00000540438 MAP3K7CLP57077 242 aa17.55■□□□□ 0.4
USP28-208ENST00000540438 CCNA1P78396 465 aa17.55■□□□□ 0.4
USP28-208ENST00000540438 PDCD7Q8N8D1 485 aaKnown RBP17.55■□□□□ 0.4
USP28-208ENST00000540438 SLC35F5Q8WV83 523 aa17.55■□□□□ 0.4
USP28-208ENST00000540438 KCTD15Q96SI1 283 aaPredicted RBP17.55■□□□□ 0.4
USP28-208ENST00000540438 ACSS3Q9H6R3 686 aa17.55■□□□□ 0.4
USP28-208ENST00000540438 GGA2Q9UJY4 613 aa17.55■□□□□ 0.4
USP28-208ENST00000540438 ITGA11Q9UKX5 1188 aa17.55■□□□□ 0.4
USP28-208ENST00000540438 TTC3P53804 2025 aa17.55■□□□□ 0.4
USP28-208ENST00000540438 EPHB2P29323 1055 aa17.55■□□□□ 0.4
USP28-208ENST00000540438 PHBP35232 272 aa17.55■□□□□ 0.4
USP28-208ENST00000540438 FAM47CQ5HY64 1035 aa17.55■□□□□ 0.4
USP28-208ENST00000540438 WSCD1Q658N2 575 aa17.55■□□□□ 0.4
USP28-208ENST00000540438 OSTM1Q86WC4 334 aa17.55■□□□□ 0.4
USP28-208ENST00000540438 LINC01465Q8N7H1 131 aa17.55■□□□□ 0.4
USP28-208ENST00000540438 TTC13Q8NBP0 860 aa17.55■□□□□ 0.4
USP28-208ENST00000540438 KBTBD7Q8WVZ9 684 aa17.55■□□□□ 0.4
USP28-208ENST00000540438 LRRC37BQ96QE4 947 aa17.55■□□□□ 0.4
USP28-208ENST00000540438 SNX25Q9H3E2 840 aa17.55■□□□□ 0.4
USP28-208ENST00000540438 FAM237BA0A1B0GVD1 139 aa17.54■□□□□ 0.4
USP28-208ENST00000540438 TCEA3O75764 348 aa17.54■□□□□ 0.4
USP28-208ENST00000540438 KDELC2Q7Z4H8 507 aa17.54■□□□□ 0.4
USP28-208ENST00000540438 PIGZQ86VD9 579 aa17.54■□□□□ 0.4
USP28-208ENST00000540438 GCOM2Q9BZD3 368 aaPredicted RBP17.54■□□□□ 0.4
USP28-208ENST00000540438 NRDE2Q9H7Z3 1164 aa17.54■□□□□ 0.4
USP28-208ENST00000540438 PLAC1Q9HBJ0 212 aa17.54■□□□□ 0.4
USP28-208ENST00000540438 PRKAG3Q9UGI9 489 aa17.54■□□□□ 0.4
USP28-208ENST00000540438 WDR27A2RRH5 827 aa17.54■□□□□ 0.4
USP28-208ENST00000540438 KPNA7A9QM74 516 aa17.54■□□□□ 0.4
USP28-208ENST00000540438 BNIP1Q12981 228 aa17.54■□□□□ 0.4
USP28-208ENST00000540438 FBXO47Q5MNV8 452 aa17.54■□□□□ 0.4
USP28-208ENST00000540438 SLC27A1Q6PCB7 646 aa17.54■□□□□ 0.4
USP28-208ENST00000540438 PNPLA1Q8N8W4 532 aa17.54■□□□□ 0.4
USP28-208ENST00000540438 ADAMTS10Q9H324 1103 aa17.54■□□□□ 0.4
USP28-208ENST00000540438 FAM72CH0Y354 149 aa17.53■□□□□ 0.4
USP28-208ENST00000540438 GPR32O75388 356 aa17.53■□□□□ 0.4
USP28-208ENST00000540438 CELF2O95319 508 aaKnown RBP17.53■□□□□ 0.4
USP28-208ENST00000540438 ABHD2P08910 425 aa17.53■□□□□ 0.4
USP28-208ENST00000540438 SESN3P58005 492 aa17.53■□□□□ 0.4
USP28-208ENST00000540438 FAM72AQ5TYM5 149 aa17.53■□□□□ 0.4
USP28-208ENST00000540438 FAM72DQ6L9T8 149 aa17.53■□□□□ 0.4
USP28-208ENST00000540438 FAM72BQ86X60 149 aa17.53■□□□□ 0.4
USP28-208ENST00000540438 AGR3Q8TD06 166 aa17.53■□□□□ 0.4
USP28-208ENST00000540438 UTP4Q969X6 686 aaKnown RBP17.53■□□□□ 0.4
USP28-208ENST00000540438 SHCBP1LQ9BZQ2 653 aa17.53■□□□□ 0.4
USP28-208ENST00000540438 UNKQ9C0B0 810 aaKnown RBP17.53■□□□□ 0.4
USP28-208ENST00000540438 CYP3A43Q9HB55 503 aa17.53■□□□□ 0.4
USP28-208ENST00000540438 ATXN2Q99700 1313 aaKnown RBP17.53■□□□□ 0.4
USP28-208ENST00000540438 CASTOR2A6NHX0 329 aa17.53■□□□□ 0.4
USP28-208ENST00000540438 EDF1O60869 148 aaKnown RBP17.53■□□□□ 0.4
USP28-208ENST00000540438 DNAJC8O75937 253 aaPredicted RBP17.53■□□□□ 0.4
USP28-208ENST00000540438 L1CAMP32004 1257 aa17.53■□□□□ 0.4
USP28-208ENST00000540438 GABRB2P47870 512 aa17.53■□□□□ 0.4
USP28-208ENST00000540438 SULT1E1P49888 294 aa17.53■□□□□ 0.4
USP28-208ENST00000540438 CACNA2D1P54289 1103 aa17.53■□□□□ 0.4
USP28-208ENST00000540438 DUSP28Q4G0W2 176 aa17.53■□□□□ 0.4
USP28-208ENST00000540438 CES4AQ5XG92 561 aa17.53■□□□□ 0.4
USP28-208ENST00000540438 FNIP1Q8TF40 1166 aa17.53■□□□□ 0.4
USP28-208ENST00000540438 AZIN2Q96A70 460 aa17.53■□□□□ 0.4
USP28-208ENST00000540438 SNX27Q96L92 541 aa17.53■□□□□ 0.4
USP28-208ENST00000540438 CYTH2Q99418 400 aa17.53■□□□□ 0.4
USP28-208ENST00000540438 RXFP1Q9HBX9 757 aa17.53■□□□□ 0.4
USP28-208ENST00000540438 F8W810 466 aa17.53■□□□□ 0.4
USP28-208ENST00000540438 SAT1P21673 171 aa17.53■□□□□ 0.4
USP28-208ENST00000540438 ATICP31939 592 aa17.53■□□□□ 0.4
USP28-208ENST00000540438 GRM5P41594 1212 aa17.53■□□□□ 0.4
USP28-208ENST00000540438 ZBTB16Q05516 673 aa17.53■□□□□ 0.4
USP28-208ENST00000540438 INCA1Q0VD86 236 aa17.53■□□□□ 0.4
USP28-208ENST00000540438 KCNJ11Q14654 390 aa17.53■□□□□ 0.4
USP28-208ENST00000540438 PDK4Q16654 411 aa17.53■□□□□ 0.4
USP28-208ENST00000540438 NLRP9Q7RTR0 991 aa17.53■□□□□ 0.4
USP28-208ENST00000540438 APBB1IPQ7Z5R6 666 aaPredicted RBP17.53■□□□□ 0.4
USP28-208ENST00000540438 TLK2Q86UE8 772 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms