RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 GAREM2Q75VX8 874 aa20.24■□□□□ 0.83
USP39-218ENST00000493829 PDZD4Q76G19 769 aaPredicted RBP20.24■□□□□ 0.83
USP39-218ENST00000493829 TAC4Q86UU9 113 aa20.24■□□□□ 0.83
USP39-218ENST00000493829 SLC35F6Q8N357 371 aa20.24■□□□□ 0.83
USP39-218ENST00000493829 DQX1Q8TE96 717 aaKnown RBP20.24■□□□□ 0.83
USP39-218ENST00000493829 FAM172AQ8WUF8 416 aa20.24■□□□□ 0.83
USP39-218ENST00000493829 OVCA2Q8WZ82 227 aa20.24■□□□□ 0.83
USP39-218ENST00000493829 TCEAL4Q96EI5 215 aa20.24■□□□□ 0.83
USP39-218ENST00000493829 DDX23Q9BUQ8 820 aaKnown RBP20.24■□□□□ 0.83
USP39-218ENST00000493829 TRIM62Q9BVG3 475 aa20.24■□□□□ 0.83
USP39-218ENST00000493829 ATXN3LQ9H3M9 355 aa20.24■□□□□ 0.83
USP39-218ENST00000493829 MTPAPQ9NVV4 582 aaKnown RBP eCLIP20.24■□□□□ 0.83
USP39-218ENST00000493829 CALCOCO1Q9P1Z2 691 aa20.24■□□□□ 0.83
USP39-218ENST00000493829 STAP1Q9ULZ2 295 aa20.24■□□□□ 0.83
USP39-218ENST00000493829 C2orf16Q68DN1 1984 aa20.24■□□□□ 0.83
USP39-218ENST00000493829 ESPNB1AK53 854 aa20.23■□□□□ 0.83
USP39-218ENST00000493829 M0QYT0 321 aa20.23■□□□□ 0.83
USP39-218ENST00000493829 DPYSL4O14531 572 aa20.23■□□□□ 0.83
USP39-218ENST00000493829 MSI1O43347 362 aaKnown RBP20.23■□□□□ 0.83
USP39-218ENST00000493829 TLR5O60602 858 aa20.23■□□□□ 0.83
USP39-218ENST00000493829 F11P03951 625 aa20.23■□□□□ 0.83
USP39-218ENST00000493829 ZDHHC11BP0C7U3 371 aa20.23■□□□□ 0.83
USP39-218ENST00000493829 COMTP21964 271 aa20.23■□□□□ 0.83
USP39-218ENST00000493829 NOS2P35228 1153 aa20.23■□□□□ 0.83
USP39-218ENST00000493829 GJC1P36383 396 aa20.23■□□□□ 0.83
USP39-218ENST00000493829 DNA2P51530 1060 aa20.23■□□□□ 0.83
USP39-218ENST00000493829 ATXN1P54253 815 aaKnown RBP20.23■□□□□ 0.83
USP39-218ENST00000493829 DLX2Q07687 328 aaPredicted RBP20.23■□□□□ 0.83
USP39-218ENST00000493829 EFEMP1Q12805 493 aa20.23■□□□□ 0.83
USP39-218ENST00000493829 CCDC85BQ15834 202 aaPredicted RBP20.23■□□□□ 0.83
USP39-218ENST00000493829 SLC5A9Q2M3M2 681 aa20.23■□□□□ 0.83
USP39-218ENST00000493829 PABPC1LQ4VXU2 614 aaKnown RBP20.23■□□□□ 0.83
USP39-218ENST00000493829 STXBP5Q5T5C0 1151 aa20.23■□□□□ 0.83
USP39-218ENST00000493829 C11orf63Q6NUN7 778 aa20.23■□□□□ 0.83
USP39-218ENST00000493829 LRRC57Q8N9N7 239 aa20.23■□□□□ 0.83
USP39-218ENST00000493829 CDX2Q99626 313 aaPredicted RBP20.23■□□□□ 0.83
USP39-218ENST00000493829 CNPY3Q9BT09 278 aa20.23■□□□□ 0.83
USP39-218ENST00000493829 NACA2Q9H009 215 aa20.23■□□□□ 0.83
USP39-218ENST00000493829 SFMBT1Q9UHJ3 866 aa20.23■□□□□ 0.83
USP39-218ENST00000493829 RASAL2Q9UJF2 1139 aa20.23■□□□□ 0.83
USP39-218ENST00000493829 SPOPO43791 374 aa20.22■□□□□ 0.83
USP39-218ENST00000493829 TCF4P15884 667 aa20.22■□□□□ 0.83
USP39-218ENST00000493829 PSEN1P49768 467 aa20.22■□□□□ 0.83
USP39-218ENST00000493829 ADAM15Q13444 863 aa20.22■□□□□ 0.83
USP39-218ENST00000493829 CLUL1Q15846 466 aa20.22■□□□□ 0.83
USP39-218ENST00000493829 SLC25A52Q3SY17 297 aa20.22■□□□□ 0.83
USP39-218ENST00000493829 ARCQ7LC44 396 aa20.22■□□□□ 0.83
USP39-218ENST00000493829 MIB1Q86YT6 1006 aa20.22■□□□□ 0.83
USP39-218ENST00000493829 DEFB123Q8N688 67 aa20.22■□□□□ 0.83
USP39-218ENST00000493829 FNIP1Q8TF40 1166 aa20.22■□□□□ 0.83
USP39-218ENST00000493829 ING5Q8WYH8 240 aa20.22■□□□□ 0.83
USP39-218ENST00000493829 DDIT4Q9NX09 232 aa20.22■□□□□ 0.83
USP39-218ENST00000493829 CLIC5Q9NZA1 410 aa20.22■□□□□ 0.83
USP39-218ENST00000493829 PACSIN2Q9UNF0 486 aaPredicted RBP20.22■□□□□ 0.83
USP39-218ENST00000493829 NCK2O43639 380 aa20.22■□□□□ 0.83
USP39-218ENST00000493829 POU3F3P20264 500 aaPredicted RBP20.22■□□□□ 0.83
USP39-218ENST00000493829 CDC25CP30307 473 aa20.22■□□□□ 0.83
USP39-218ENST00000493829 PTPN9P43378 593 aa20.22■□□□□ 0.83
USP39-218ENST00000493829 PIGHQ14442 188 aaPredicted RBP20.22■□□□□ 0.83
USP39-218ENST00000493829 HECTD3Q5T447 861 aa20.22■□□□□ 0.83
USP39-218ENST00000493829 TXNDC8Q6A555 127 aa20.22■□□□□ 0.83
USP39-218ENST00000493829 SYCE2Q6PIF2 218 aa20.22■□□□□ 0.83
USP39-218ENST00000493829 TRIM58Q8NG06 486 aa20.22■□□□□ 0.83
USP39-218ENST00000493829 GADD45GIP1Q8TAE8 222 aaPredicted RBP20.22■□□□□ 0.83
USP39-218ENST00000493829 SHKBP1Q8TBC3 707 aa20.22■□□□□ 0.83
USP39-218ENST00000493829 PPM1EQ8WY54 764 aa20.22■□□□□ 0.83
USP39-218ENST00000493829 MRPS31Q92665 395 aaKnown RBP20.22■□□□□ 0.83
USP39-218ENST00000493829 NPY6RQ99463 290 aa20.22■□□□□ 0.83
USP39-218ENST00000493829 CLEC1BQ9P126 229 aa20.22■□□□□ 0.83
USP39-218ENST00000493829 DOCK6Q96HP0 2047 aa20.22■□□□□ 0.83
USP39-218ENST00000493829 COCHO43405 550 aa20.21■□□□□ 0.83
USP39-218ENST00000493829 TRUB2O95900 331 aaKnown RBP20.21■□□□□ 0.83
USP39-218ENST00000493829 DESP17661 470 aa20.21■□□□□ 0.83
USP39-218ENST00000493829 TEAD2Q15562 447 aa20.21■□□□□ 0.83
USP39-218ENST00000493829 SCYL2Q6P3W7 929 aa20.21■□□□□ 0.83
USP39-218ENST00000493829 TMEM184AQ6ZMB5 413 aa20.21■□□□□ 0.83
USP39-218ENST00000493829 GUCD1Q96NT3 240 aa20.21■□□□□ 0.83
USP39-218ENST00000493829 WDR24Q96S15 920 aa20.21■□□□□ 0.83
USP39-218ENST00000493829 SMOC2Q9H3U7 446 aa20.21■□□□□ 0.83
USP39-218ENST00000493829 ALG6Q9Y672 507 aa20.21■□□□□ 0.83
USP39-218ENST00000493829 ANAPC1Q9H1A4 1944 aa20.21■□□□□ 0.83
USP39-218ENST00000493829 LRCH4O75427 683 aa20.2■□□□□ 0.82
USP39-218ENST00000493829 RNF8O76064 485 aa20.2■□□□□ 0.82
USP39-218ENST00000493829 HMBSP08397 361 aa20.2■□□□□ 0.82
USP39-218ENST00000493829 FOSL2P15408 326 aa20.2■□□□□ 0.82
USP39-218ENST00000493829 DEUP1Q05D60 604 aa20.2■□□□□ 0.82
USP39-218ENST00000493829 CC2D1AQ6P1N0 951 aaPredicted RBP20.2■□□□□ 0.82
USP39-218ENST00000493829 PEX26Q7Z412 305 aa20.2■□□□□ 0.82
USP39-218ENST00000493829 SYCE1Q8N0S2 351 aa20.2■□□□□ 0.82
USP39-218ENST00000493829 ARFGAP1Q8N6T3 406 aa20.2■□□□□ 0.82
USP39-218ENST00000493829 NIPA2Q8N8Q9 360 aa20.2■□□□□ 0.82
USP39-218ENST00000493829 MAB21L3Q8N8X9 362 aa20.2■□□□□ 0.82
USP39-218ENST00000493829 TTC16Q8NEE8 873 aa20.2■□□□□ 0.82
USP39-218ENST00000493829 CMASQ8NFW8 434 aaPredicted RBP20.2■□□□□ 0.82
USP39-218ENST00000493829 SLC22A12Q96S37 553 aa20.2■□□□□ 0.82
USP39-218ENST00000493829 PIGVQ9NUD9 493 aa20.2■□□□□ 0.82
USP39-218ENST00000493829 PCSK1NQ9UHG2 260 aa20.2■□□□□ 0.82
USP39-218ENST00000493829 ENC1O14682 589 aa20.19■□□□□ 0.82
USP39-218ENST00000493829 POU2F2P09086 479 aa20.19■□□□□ 0.82
USP39-218ENST00000493829 CEBPBP17676 345 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms