RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 RMND1Q9NWS8 449 aa14.36□□□□□ -0.11
COL6A3-211ENST00000491233 RAB20Q9NX57 234 aa14.36□□□□□ -0.11
COL6A3-211ENST00000491233 MARK1Q9P0L2 795 aa14.36□□□□□ -0.11
COL6A3-211ENST00000491233 DNMT3LQ9UJW3 386 aa14.36□□□□□ -0.11
COL6A3-211ENST00000491233 LNP1A1A4G5 178 aa14.35□□□□□ -0.11
COL6A3-211ENST00000491233 PATE3B3GLJ2 98 aa14.35□□□□□ -0.11
COL6A3-211ENST00000491233 STX10O60499 249 aa14.35□□□□□ -0.11
COL6A3-211ENST00000491233 RALAP11233 206 aa14.35□□□□□ -0.11
COL6A3-211ENST00000491233 HOXB2P14652 356 aa14.35□□□□□ -0.11
COL6A3-211ENST00000491233 WASP42768 502 aa14.35□□□□□ -0.11
COL6A3-211ENST00000491233 PRCPP42785 496 aa14.35□□□□□ -0.11
COL6A3-211ENST00000491233 PSEN1P49768 467 aa14.35□□□□□ -0.11
COL6A3-211ENST00000491233 RAD23BP54727 409 aa14.35□□□□□ -0.11
COL6A3-211ENST00000491233 MCCD1P59942 119 aaPredicted RBP14.35□□□□□ -0.11
COL6A3-211ENST00000491233 CBWD6Q4V339 395 aa14.35□□□□□ -0.11
COL6A3-211ENST00000491233 CBWD3Q5JTY5 395 aa14.35□□□□□ -0.11
COL6A3-211ENST00000491233 CBWD5Q5RIA9 395 aa14.35□□□□□ -0.11
COL6A3-211ENST00000491233 Q6ZNB5 142 aa14.35□□□□□ -0.11
COL6A3-211ENST00000491233 NUDT18Q6ZVK8 323 aa14.35□□□□□ -0.11
COL6A3-211ENST00000491233 ARMCX6Q7L4S7 300 aa14.35□□□□□ -0.11
COL6A3-211ENST00000491233 LPCAT2Q7L5N7 544 aa14.35□□□□□ -0.11
COL6A3-211ENST00000491233 MIB1Q86YT6 1006 aa14.35□□□□□ -0.11
COL6A3-211ENST00000491233 FMR1NBQ8N0W7 255 aaPredicted RBP14.35□□□□□ -0.11
COL6A3-211ENST00000491233 TTC39CQ8N584 583 aa14.35□□□□□ -0.11
COL6A3-211ENST00000491233 FRMD1Q8N878 549 aa14.35□□□□□ -0.11
COL6A3-211ENST00000491233 SLC4A11Q8NBS3 891 aa14.35□□□□□ -0.11
COL6A3-211ENST00000491233 TMEM176AQ96HP8 235 aa14.35□□□□□ -0.11
COL6A3-211ENST00000491233 FAXDC2Q96IV6 333 aa14.35□□□□□ -0.11
COL6A3-211ENST00000491233 XPO6Q96QU8 1125 aaKnown RBP14.35□□□□□ -0.11
COL6A3-211ENST00000491233 TSG101Q99816 390 aa14.35□□□□□ -0.11
COL6A3-211ENST00000491233 WDR35Q9P2L0 1181 aa14.35□□□□□ -0.11
COL6A3-211ENST00000491233 RASAL2Q9UJF2 1139 aa14.35□□□□□ -0.11
COL6A3-211ENST00000491233 HCN2Q9UL51 889 aa14.35□□□□□ -0.11
COL6A3-211ENST00000491233 GTF3C3Q9Y5Q9 886 aa14.35□□□□□ -0.11
COL6A3-211ENST00000491233 USP3Q9Y6I4 520 aa14.35□□□□□ -0.11
COL6A3-211ENST00000491233 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa14.34□□□□□ -0.11
COL6A3-211ENST00000491233 KHNYNO15037 678 aaKnown RBP14.34□□□□□ -0.11
COL6A3-211ENST00000491233 MAP3K13O43283 966 aa14.34□□□□□ -0.11
COL6A3-211ENST00000491233 STC2O76061 302 aa14.34□□□□□ -0.11
COL6A3-211ENST00000491233 NTSR1P30989 418 aa14.34□□□□□ -0.11
COL6A3-211ENST00000491233 PLA2G4AP47712 749 aa14.34□□□□□ -0.11
COL6A3-211ENST00000491233 MAP7D1Q3KQU3 841 aa14.34□□□□□ -0.11
COL6A3-211ENST00000491233 ZNF658Q5TYW1 1059 aaPredicted RBP14.34□□□□□ -0.11
COL6A3-211ENST00000491233 ARHGAP17Q68EM7 881 aa14.34□□□□□ -0.11
COL6A3-211ENST00000491233 TOGARAM2Q6ZUX3 1019 aa14.34□□□□□ -0.11
COL6A3-211ENST00000491233 TADA2BQ86TJ2 420 aa14.34□□□□□ -0.11
COL6A3-211ENST00000491233 PIGZQ86VD9 579 aa14.34□□□□□ -0.11
COL6A3-211ENST00000491233 ZC3H3Q8IXZ2 948 aaKnown RBP14.34□□□□□ -0.11
COL6A3-211ENST00000491233 TMEFF1Q8IYR6 380 aa14.34□□□□□ -0.11
COL6A3-211ENST00000491233 KCNV2Q8TDN2 545 aa14.34□□□□□ -0.11
COL6A3-211ENST00000491233 PIGKQ92643 395 aa14.34□□□□□ -0.11
COL6A3-211ENST00000491233 TATDN2Q93075 761 aa14.34□□□□□ -0.11
COL6A3-211ENST00000491233 BHMTQ93088 406 aa14.34□□□□□ -0.11
COL6A3-211ENST00000491233 ACOX2Q99424 681 aa14.34□□□□□ -0.11
COL6A3-211ENST00000491233 CLIC5Q9NZA1 410 aa14.34□□□□□ -0.11
COL6A3-211ENST00000491233 MBD1Q9UIS9 605 aaPredicted RBP14.34□□□□□ -0.11
COL6A3-211ENST00000491233 STARD13Q9Y3M8 1113 aa14.34□□□□□ -0.11
COL6A3-211ENST00000491233 ADAMTS9Q9P2N4 1935 aa14.33□□□□□ -0.11
COL6A3-211ENST00000491233 TRIM49BA6NDI0 452 aa14.33□□□□□ -0.12
COL6A3-211ENST00000491233 C4orf47A7E2U8 309 aa14.33□□□□□ -0.12
COL6A3-211ENST00000491233 PRRT4C9JH25 899 aa14.33□□□□□ -0.12
COL6A3-211ENST00000491233 SLC16A3O15427 465 aaKnown RBP14.33□□□□□ -0.12
COL6A3-211ENST00000491233 GABRG2P18507 467 aa14.33□□□□□ -0.12
COL6A3-211ENST00000491233 PTGER3P43115 390 aa14.33□□□□□ -0.12
COL6A3-211ENST00000491233 DGKGP49619 791 aa14.33□□□□□ -0.12
COL6A3-211ENST00000491233 PMS1P54277 932 aaKnown RBP14.33□□□□□ -0.12
COL6A3-211ENST00000491233 EFEMP1Q12805 493 aa14.33□□□□□ -0.12
COL6A3-211ENST00000491233 GOLGA7BQ2TAP0 167 aa14.33□□□□□ -0.12
COL6A3-211ENST00000491233 COBLL1Q53SF7 1204 aa14.33□□□□□ -0.12
COL6A3-211ENST00000491233 N4BP2L1Q5TBK1 243 aaPredicted RBP14.33□□□□□ -0.12
COL6A3-211ENST00000491233 CHPFQ8IZ52 775 aa14.33□□□□□ -0.12
COL6A3-211ENST00000491233 ZNF276Q8N554 614 aa14.33□□□□□ -0.12
COL6A3-211ENST00000491233 ERCC4Q92889 916 aaPredicted RBP14.33□□□□□ -0.12
COL6A3-211ENST00000491233 ERLEC1Q96DZ1 483 aa14.33□□□□□ -0.12
COL6A3-211ENST00000491233 GSDMAQ96QA5 445 aa14.33□□□□□ -0.12
COL6A3-211ENST00000491233 CDK5RAP1Q96SZ6 601 aaKnown RBP14.33□□□□□ -0.12
COL6A3-211ENST00000491233 LSM14BQ9BX40 385 aaKnown RBP14.33□□□□□ -0.12
COL6A3-211ENST00000491233 PLK2Q9NYY3 685 aa14.33□□□□□ -0.12
COL6A3-211ENST00000491233 CALCOCO1Q9P1Z2 691 aa14.33□□□□□ -0.12
COL6A3-211ENST00000491233 ATXN2Q99700 1313 aaKnown RBP14.33□□□□□ -0.12
COL6A3-211ENST00000491233 CNOT1A5YKK6 2376 aaKnown RBP14.32□□□□□ -0.12
COL6A3-211ENST00000491233 A0A1W2PQF6 199 aa14.32□□□□□ -0.12
COL6A3-211ENST00000491233 GOLGA6L4A6NEF3 574 aa14.32□□□□□ -0.12
COL6A3-211ENST00000491233 KCNK5O95279 499 aa14.32□□□□□ -0.12
COL6A3-211ENST00000491233 SMC2O95347 1197 aa14.32□□□□□ -0.12
COL6A3-211ENST00000491233 KLKB1P03952 638 aa14.32□□□□□ -0.12
COL6A3-211ENST00000491233 HMBSP08397 361 aa14.32□□□□□ -0.12
COL6A3-211ENST00000491233 FKBP3Q00688 224 aaKnown RBP14.32□□□□□ -0.12
COL6A3-211ENST00000491233 CUL2Q13617 745 aa14.32□□□□□ -0.12
COL6A3-211ENST00000491233 BYSLQ13895 437 aaKnown RBP14.32□□□□□ -0.12
COL6A3-211ENST00000491233 ANKRD40Q6AI12 368 aa14.32□□□□□ -0.12
COL6A3-211ENST00000491233 RSRC2Q7L4I2 434 aaKnown RBP14.32□□□□□ -0.12
COL6A3-211ENST00000491233 SMARCE1Q969G3 411 aa14.32□□□□□ -0.12
COL6A3-211ENST00000491233 P2RY11Q96G91 374 aa14.32□□□□□ -0.12
COL6A3-211ENST00000491233 FAM124BQ9H5Z6 455 aaPredicted RBP14.32□□□□□ -0.12
COL6A3-211ENST00000491233 TMEM9BQ9NQ34 198 aa14.32□□□□□ -0.12
COL6A3-211ENST00000491233 TSPAN16Q9UKR8 245 aa14.32□□□□□ -0.12
COL6A3-211ENST00000491233 COQ4Q9Y3A0 265 aa14.32□□□□□ -0.12
COL6A3-211ENST00000491233 RAD54BQ9Y620 910 aa14.32□□□□□ -0.12
COL6A3-211ENST00000491233 PI4KAP42356 2102 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms