RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 NME5P56597 212 aa16.92■□□□□ 0.3
COL7A1-210ENST00000487017 SNX30Q5VWJ9 437 aa16.92■□□□□ 0.3
COL7A1-210ENST00000487017 MFSD7Q6UXD7 560 aa16.92■□□□□ 0.3
COL7A1-210ENST00000487017 RINLQ6ZS11 566 aa16.92■□□□□ 0.3
COL7A1-210ENST00000487017 KCNK18Q7Z418 384 aa16.92■□□□□ 0.3
COL7A1-210ENST00000487017 ZNF75CPQ92670 426 aaPredicted RBP16.92■□□□□ 0.3
COL7A1-210ENST00000487017 TBCBQ99426 244 aa16.92■□□□□ 0.3
COL7A1-210ENST00000487017 MAGEB16A2A368 324 aa16.91■□□□□ 0.3
COL7A1-210ENST00000487017 NR5A2O00482 541 aa16.91■□□□□ 0.3
COL7A1-210ENST00000487017 PRKCIP41743 596 aa16.91■□□□□ 0.3
COL7A1-210ENST00000487017 LAMTOR4Q0VGL1 99 aa16.91■□□□□ 0.3
COL7A1-210ENST00000487017 TRIM16LQ309B1 348 aa16.91■□□□□ 0.3
COL7A1-210ENST00000487017 ZCCHC9Q8N567 271 aaKnown RBP16.91■□□□□ 0.3
COL7A1-210ENST00000487017 SRPK1Q96SB4 655 aaKnown RBP16.91■□□□□ 0.3
COL7A1-210ENST00000487017 SH3BP1Q9Y3L3 701 aa16.91■□□□□ 0.3
COL7A1-210ENST00000487017 PRRG1O14668 218 aa16.91■□□□□ 0.3
COL7A1-210ENST00000487017 NCAM2O15394 837 aa16.91■□□□□ 0.3
COL7A1-210ENST00000487017 IMPDH2P12268 514 aa16.91■□□□□ 0.3
COL7A1-210ENST00000487017 CSTF3Q12996 717 aaKnown RBP16.91■□□□□ 0.3
COL7A1-210ENST00000487017 CBWD6Q4V339 395 aa16.91■□□□□ 0.3
COL7A1-210ENST00000487017 CBWD3Q5JTY5 395 aa16.91■□□□□ 0.3
COL7A1-210ENST00000487017 CBWD5Q5RIA9 395 aa16.91■□□□□ 0.3
COL7A1-210ENST00000487017 GRTP1Q5TC63 336 aa16.91■□□□□ 0.3
COL7A1-210ENST00000487017 RHBDL2Q9NX52 303 aa16.91■□□□□ 0.3
COL7A1-210ENST00000487017 ITGA11Q9UKX5 1188 aa16.91■□□□□ 0.3
COL7A1-210ENST00000487017 DNPEPQ9ULA0 475 aa16.91■□□□□ 0.3
COL7A1-210ENST00000487017 JCHAINP01591 159 aa16.91■□□□□ 0.3
COL7A1-210ENST00000487017 CXCL8P10145 99 aa16.91■□□□□ 0.3
COL7A1-210ENST00000487017 ALADP13716 330 aa16.91■□□□□ 0.3
COL7A1-210ENST00000487017 SLC26A2P50443 739 aa16.91■□□□□ 0.3
COL7A1-210ENST00000487017 CSHL1Q14406 222 aa16.91■□□□□ 0.3
COL7A1-210ENST00000487017 HS6ST3Q8IZP7 471 aa16.91■□□□□ 0.3
COL7A1-210ENST00000487017 CENPLQ8N0S6 344 aaPredicted RBP16.91■□□□□ 0.3
COL7A1-210ENST00000487017 SNRNP27Q8WVK2 155 aaKnown RBP16.91■□□□□ 0.3
COL7A1-210ENST00000487017 GPAMQ9HCL2 828 aa16.91■□□□□ 0.3
COL7A1-210ENST00000487017 NCF1BA6NI72 391 aaPredicted RBP16.91■□□□□ 0.3
COL7A1-210ENST00000487017 NCF1CA8MVU1 366 aaPredicted RBP16.91■□□□□ 0.3
COL7A1-210ENST00000487017 NCF1P14598 390 aaPredicted RBP16.91■□□□□ 0.3
COL7A1-210ENST00000487017 TAL1P17542 331 aaPredicted RBP16.91■□□□□ 0.3
COL7A1-210ENST00000487017 IYDQ6PHW0 289 aa16.91■□□□□ 0.3
COL7A1-210ENST00000487017 C10orf88Q9H8K7 445 aa16.91■□□□□ 0.3
COL7A1-210ENST00000487017 H2AFY2Q9P0M6 372 aaPredicted RBP16.91■□□□□ 0.3
COL7A1-210ENST00000487017 PDE5AO76074 875 aa16.9■□□□□ 0.3
COL7A1-210ENST00000487017 VTNP04004 478 aa16.9■□□□□ 0.3
COL7A1-210ENST00000487017 BMP6P22004 513 aa16.9■□□□□ 0.3
COL7A1-210ENST00000487017 MIIPQ5JXC2 388 aa16.9■□□□□ 0.3
COL7A1-210ENST00000487017 ANKRD13AQ8IZ07 590 aa16.9■□□□□ 0.3
COL7A1-210ENST00000487017 PPP2R3CQ969Q6 453 aa16.9■□□□□ 0.3
COL7A1-210ENST00000487017 RMND5AQ9H871 391 aa16.9■□□□□ 0.3
COL7A1-210ENST00000487017 SAR1AQ9NR31 198 aa16.9■□□□□ 0.3
COL7A1-210ENST00000487017 KCNH4Q9UQ05 1017 aa16.9■□□□□ 0.3
COL7A1-210ENST00000487017 PRR23D1E9PI22 279 aaPredicted RBP16.9■□□□□ 0.3
COL7A1-210ENST00000487017 UBDO15205 165 aa16.9■□□□□ 0.3
COL7A1-210ENST00000487017 PRR23D2P0DMB1 279 aaPredicted RBP16.9■□□□□ 0.3
COL7A1-210ENST00000487017 GYS1P13807 737 aa16.9■□□□□ 0.3
COL7A1-210ENST00000487017 MMRN1Q13201 1228 aa16.9■□□□□ 0.3
COL7A1-210ENST00000487017 NFIL3Q16649 462 aa16.9■□□□□ 0.3
COL7A1-210ENST00000487017 ZNF662Q6ZS27 426 aa16.9■□□□□ 0.3
COL7A1-210ENST00000487017 ZBTB49Q6ZSB9 765 aa16.9■□□□□ 0.3
COL7A1-210ENST00000487017 SLC22A9Q8IVM8 553 aa16.9■□□□□ 0.3
COL7A1-210ENST00000487017 FUKQ8N0W3 1084 aa16.9■□□□□ 0.3
COL7A1-210ENST00000487017 SYTL2Q9HCH5 934 aa16.9■□□□□ 0.3
COL7A1-210ENST00000487017 BARX2Q9UMQ3 279 aaPredicted RBP16.9■□□□□ 0.3
COL7A1-210ENST00000487017 LRCH1Q9Y2L9 728 aa16.9■□□□□ 0.3
COL7A1-210ENST00000487017 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.9■□□□□ 0.3
COL7A1-210ENST00000487017 CYTH3O43739 400 aa16.9■□□□□ 0.3
COL7A1-210ENST00000487017 ATP5BP06576 529 aaKnown RBP16.9■□□□□ 0.3
COL7A1-210ENST00000487017 SLC44A4Q53GD3 710 aa16.9■□□□□ 0.3
COL7A1-210ENST00000487017 NIPA1Q7RTP0 329 aa16.9■□□□□ 0.3
COL7A1-210ENST00000487017 RIN3Q8TB24 985 aa16.9■□□□□ 0.3
COL7A1-210ENST00000487017 USP13Q92995 863 aaPredicted RBP16.9■□□□□ 0.3
COL7A1-210ENST00000487017 L3MBTL3Q96JM7 780 aaPredicted RBP16.9■□□□□ 0.3
COL7A1-210ENST00000487017 CHST7Q9NS84 486 aa16.9■□□□□ 0.3
COL7A1-210ENST00000487017 MPP6Q9NZW5 540 aa16.9■□□□□ 0.3
COL7A1-210ENST00000487017 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.9■□□□□ 0.3
COL7A1-210ENST00000487017 TOMM70O94826 608 aa16.9■□□□□ 0.3
COL7A1-210ENST00000487017 UPP2O95045 317 aa16.9■□□□□ 0.3
COL7A1-210ENST00000487017 CETPP11597 493 aa16.9■□□□□ 0.3
COL7A1-210ENST00000487017 FCGR1AP12314 374 aa16.9■□□□□ 0.3
COL7A1-210ENST00000487017 PGAM1P18669 254 aa16.9■□□□□ 0.3
COL7A1-210ENST00000487017 GP5P40197 560 aa16.9■□□□□ 0.3
COL7A1-210ENST00000487017 SLC11A2P49281 568 aa16.9■□□□□ 0.3
COL7A1-210ENST00000487017 ZNF177Q13360 481 aaPredicted RBP16.9■□□□□ 0.3
COL7A1-210ENST00000487017 YTHDF3Q7Z739 585 aaKnown RBP16.9■□□□□ 0.3
COL7A1-210ENST00000487017 PGBD3Q8N328 593 aa16.9■□□□□ 0.3
COL7A1-210ENST00000487017 NMD3Q96D46 503 aaKnown RBP16.9■□□□□ 0.3
COL7A1-210ENST00000487017 MROH2AA6NES4 1674 aa16.9■□□□□ 0.3
COL7A1-210ENST00000487017 PLIN5Q00G26 463 aa16.9■□□□□ 0.3
COL7A1-210ENST00000487017 PRKAA1Q13131 559 aa16.9■□□□□ 0.3
COL7A1-210ENST00000487017 ITGA9Q13797 1035 aa16.9■□□□□ 0.3
COL7A1-210ENST00000487017 KATNAL2Q8IYT4 538 aa16.9■□□□□ 0.3
COL7A1-210ENST00000487017 SMAD5Q99717 465 aaKnown RBP16.9■□□□□ 0.3
COL7A1-210ENST00000487017 ZSCAN32Q9NX65 697 aa16.9■□□□□ 0.3
COL7A1-210ENST00000487017 GPRC5DQ9NZD1 345 aa16.9■□□□□ 0.3
COL7A1-210ENST00000487017 PPLO60437 1756 aa16.89■□□□□ 0.3
COL7A1-210ENST00000487017 ALDH5A1P51649 535 aaPredicted RBP16.89■□□□□ 0.29
COL7A1-210ENST00000487017 MAP3K7CLP57077 242 aa16.89■□□□□ 0.29
COL7A1-210ENST00000487017 ELF3P78545 371 aaPredicted RBP16.89■□□□□ 0.29
COL7A1-210ENST00000487017 CDK16Q00536 496 aa16.89■□□□□ 0.29
COL7A1-210ENST00000487017 ITGB3BPQ13352 177 aaPredicted RBP16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms