RNA–Protein interactions for RNA: ENST00000485550.5

HMGN1-215, Transcript of high mobility group nucleosome binding domain 1, human

TSL 5

Gene HMGN1, Length 745 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGN1-215	ENST00000485550	EIF4E1B	A6NMX2	242 aa	Known RBP	11.19	□□□□□ -0.62
HMGN1-215	ENST00000485550		H0Y626	953 aa		11.19	□□□□□ -0.62
HMGN1-215	ENST00000485550	TNFRSF10B	O14763	440 aa		11.19	□□□□□ -0.62
HMGN1-215	ENST00000485550	COCH	O43405	550 aa		11.19	□□□□□ -0.62
HMGN1-215	ENST00000485550	CALU	O43852	315 aa	Predicted RBP	11.19	□□□□□ -0.62
HMGN1-215	ENST00000485550	OPHN1	O60890	802 aa		11.19	□□□□□ -0.62
HMGN1-215	ENST00000485550	RTN3	O95197	1032 aa	Predicted RBP	11.19	□□□□□ -0.62
HMGN1-215	ENST00000485550	TRIM16	O95361	564 aa		11.19	□□□□□ -0.62
HMGN1-215	ENST00000485550	OLFM2	O95897	454 aa		11.19	□□□□□ -0.62
HMGN1-215	ENST00000485550	HLA-DRA	P01903	254 aa		11.19	□□□□□ -0.62
HMGN1-215	ENST00000485550	TRIM49	P0CI25	452 aa		11.19	□□□□□ -0.62
HMGN1-215	ENST00000485550	TRIM49C	P0CI26	452 aa		11.19	□□□□□ -0.62
HMGN1-215	ENST00000485550	IRF1	P10914	325 aa		11.19	□□□□□ -0.62
HMGN1-215	ENST00000485550	P4HA1	P13674	534 aa		11.19	□□□□□ -0.62
HMGN1-215	ENST00000485550	PFKL	P17858	780 aa		11.19	□□□□□ -0.62
HMGN1-215	ENST00000485550	ITPKA	P23677	461 aa		11.19	□□□□□ -0.62
HMGN1-215	ENST00000485550	ADORA2B	P29275	332 aa		11.19	□□□□□ -0.62
HMGN1-215	ENST00000485550	P2RY2	P41231	377 aa		11.19	□□□□□ -0.62
HMGN1-215	ENST00000485550	PIK3CA	P42336	1068 aa		11.19	□□□□□ -0.62
HMGN1-215	ENST00000485550	GCLM	P48507	274 aa		11.19	□□□□□ -0.62
HMGN1-215	ENST00000485550	PGF	P49763	221 aa		11.19	□□□□□ -0.62
HMGN1-215	ENST00000485550	MAP3K7CL	P57077	242 aa		11.19	□□□□□ -0.62
HMGN1-215	ENST00000485550	ZACN	Q401N2	412 aa		11.19	□□□□□ -0.62
HMGN1-215	ENST00000485550	C1orf220	Q5T0J3	134 aa		11.19	□□□□□ -0.62
HMGN1-215	ENST00000485550	HECTD3	Q5T447	861 aa		11.19	□□□□□ -0.62
HMGN1-215	ENST00000485550	EMC10	Q5UCC4	262 aa		11.19	□□□□□ -0.62
HMGN1-215	ENST00000485550	SLC23A3	Q6PIS1	610 aa		11.19	□□□□□ -0.62
HMGN1-215	ENST00000485550	RAB44	Q7Z6P3	723 aa	Predicted RBP	11.19	□□□□□ -0.62
HMGN1-215	ENST00000485550	DEFB119	Q8N690	84 aa		11.19	□□□□□ -0.62
HMGN1-215	ENST00000485550	NAT16	Q8N8M0	369 aa		11.19	□□□□□ -0.62
HMGN1-215	ENST00000485550	ZMIZ2	Q8NF64	920 aa		11.19	□□□□□ -0.62
HMGN1-215	ENST00000485550	OLIG1	Q8TAK6	271 aa		11.19	□□□□□ -0.62
HMGN1-215	ENST00000485550	WBP2	Q969T9	261 aa		11.19	□□□□□ -0.62
HMGN1-215	ENST00000485550	SMARCD1	Q96GM5	515 aa		11.19	□□□□□ -0.62
HMGN1-215	ENST00000485550	SMO	Q99835	787 aa		11.19	□□□□□ -0.62
HMGN1-215	ENST00000485550	GDPD2	Q9HCC8	539 aa		11.19	□□□□□ -0.62
HMGN1-215	ENST00000485550	DMAP1	Q9NPF5	467 aa	Predicted RBP	11.19	□□□□□ -0.62
HMGN1-215	ENST00000485550	USP25	Q9UHP3	1055 aa		11.19	□□□□□ -0.62
HMGN1-215	ENST00000485550	KNTC1	P50748	2209 aa		11.19	□□□□□ -0.62
HMGN1-215	ENST00000485550	ASH1L	Q9NR48	2969 aa	Known RBP	11.18	□□□□□ -0.62
HMGN1-215	ENST00000485550	UPK3BL1	B0FP48	263 aa		11.18	□□□□□ -0.62
HMGN1-215	ENST00000485550	UPK3BL2	E5RIL1	263 aa		11.18	□□□□□ -0.62
HMGN1-215	ENST00000485550	SLC9A3R1	O14745	358 aa	Predicted RBP	11.18	□□□□□ -0.62
HMGN1-215	ENST00000485550	NR2F2	P24468	414 aa		11.18	□□□□□ -0.62
HMGN1-215	ENST00000485550	ASPA	P45381	313 aa		11.18	□□□□□ -0.62
HMGN1-215	ENST00000485550	VAMP7	P51809	220 aa		11.18	□□□□□ -0.62
HMGN1-215	ENST00000485550	KDSR	Q06136	332 aa		11.18	□□□□□ -0.62
HMGN1-215	ENST00000485550	DPYD	Q12882	1025 aa		11.18	□□□□□ -0.62
HMGN1-215	ENST00000485550	ZNF423	Q2M1K9	1284 aa		11.18	□□□□□ -0.62
HMGN1-215	ENST00000485550	LYSMD4	Q5XG99	296 aa		11.18	□□□□□ -0.62
HMGN1-215	ENST00000485550	C12orf40	Q86WS4	652 aa		11.18	□□□□□ -0.62
HMGN1-215	ENST00000485550	PDZD8	Q8NEN9	1154 aa		11.18	□□□□□ -0.62
HMGN1-215	ENST00000485550	MDM1	Q8TC05	714 aa		11.18	□□□□□ -0.62
HMGN1-215	ENST00000485550	TAS1R2	Q8TE23	839 aa		11.18	□□□□□ -0.62
HMGN1-215	ENST00000485550	CCDC47	Q96A33	483 aa	Known RBP	11.18	□□□□□ -0.62
HMGN1-215	ENST00000485550	EEF2KMT	Q96G04	330 aa		11.18	□□□□□ -0.62
HMGN1-215	ENST00000485550	ZFR	Q96KR1	1074 aa	Known RBP	11.18	□□□□□ -0.62
HMGN1-215	ENST00000485550	SPACA7	Q96KW9	195 aa		11.18	□□□□□ -0.62
HMGN1-215	ENST00000485550	CAMK1G	Q96NX5	476 aa		11.18	□□□□□ -0.62
HMGN1-215	ENST00000485550	TWNK	Q96RR1	684 aa		11.18	□□□□□ -0.62
HMGN1-215	ENST00000485550	PNKP	Q96T60	521 aa		11.18	□□□□□ -0.62
HMGN1-215	ENST00000485550	NACA2	Q9H009	215 aa		11.18	□□□□□ -0.62
HMGN1-215	ENST00000485550	GOLPH3L	Q9H4A5	285 aa		11.18	□□□□□ -0.62
HMGN1-215	ENST00000485550	CCDC86	Q9H6F5	360 aa	Known RBP	11.18	□□□□□ -0.62
HMGN1-215	ENST00000485550	BCCIP	Q9P287	314 aa	Known RBP eCLIP	11.18	□□□□□ -0.62
HMGN1-215	ENST00000485550	PILRB	Q9UKJ0	227 aa		11.18	□□□□□ -0.62
HMGN1-215	ENST00000485550	TRAF3IP3	Q9Y228	551 aa		11.18	□□□□□ -0.62
HMGN1-215	ENST00000485550	SH3BP1	Q9Y3L3	701 aa		11.18	□□□□□ -0.62
HMGN1-215	ENST00000485550	TMEM131	Q92545	1883 aa		11.17	□□□□□ -0.62
HMGN1-215	ENST00000485550	E2F8	A0AVK6	867 aa		11.17	□□□□□ -0.62
HMGN1-215	ENST00000485550	SGK1	O00141	431 aa		11.17	□□□□□ -0.62
HMGN1-215	ENST00000485550	IKBKB	O14920	756 aa		11.17	□□□□□ -0.62
HMGN1-215	ENST00000485550	ALDH1A2	O94788	518 aa		11.17	□□□□□ -0.62
HMGN1-215	ENST00000485550	RHOBTB3	O94955	611 aa		11.17	□□□□□ -0.62
HMGN1-215	ENST00000485550	KIF20A	O95235	890 aa		11.17	□□□□□ -0.62
HMGN1-215	ENST00000485550	KLF8	O95600	359 aa	Predicted RBP	11.17	□□□□□ -0.62
HMGN1-215	ENST00000485550	TBX18	O95935	607 aa		11.17	□□□□□ -0.62
HMGN1-215	ENST00000485550	ASS1	P00966	412 aa	Known RBP	11.17	□□□□□ -0.62
HMGN1-215	ENST00000485550	MYL1	P05976	194 aa		11.17	□□□□□ -0.62
HMGN1-215	ENST00000485550	ADH5	P11766	374 aa		11.17	□□□□□ -0.62
HMGN1-215	ENST00000485550	CD59	P13987	128 aa		11.17	□□□□□ -0.62
HMGN1-215	ENST00000485550	CD58	P19256	250 aa		11.17	□□□□□ -0.62
HMGN1-215	ENST00000485550	GFPT1	Q06210	699 aa	Predicted RBP	11.17	□□□□□ -0.62
HMGN1-215	ENST00000485550	PPP3CA	Q08209	521 aa		11.17	□□□□□ -0.62
HMGN1-215	ENST00000485550	ADAM9	Q13443	819 aa		11.17	□□□□□ -0.62
HMGN1-215	ENST00000485550	LY6G5C	Q5SRR4	150 aa		11.17	□□□□□ -0.62
HMGN1-215	ENST00000485550	KRBA2	Q6ZNG9	492 aa		11.17	□□□□□ -0.62
HMGN1-215	ENST00000485550	GPRIN1	Q7Z2K8	1008 aa		11.17	□□□□□ -0.62
HMGN1-215	ENST00000485550	DDX42	Q86XP3	938 aa	Known RBP eCLIP	11.17	□□□□□ -0.62	2e-7	■□□□□ 9.2
HMGN1-215	ENST00000485550	BBS7	Q8IWZ6	715 aa		11.17	□□□□□ -0.62
HMGN1-215	ENST00000485550	CRYBG2	Q8N1P7	616 aa		11.17	□□□□□ -0.62
HMGN1-215	ENST00000485550	PGBD3	Q8N328	593 aa		11.17	□□□□□ -0.62
HMGN1-215	ENST00000485550	MINDY1	Q8N5J2	469 aa		11.17	□□□□□ -0.62
HMGN1-215	ENST00000485550	ALLC	Q8N6M5	410 aa		11.17	□□□□□ -0.62
HMGN1-215	ENST00000485550	PNPLA1	Q8N8W4	532 aa		11.17	□□□□□ -0.62
HMGN1-215	ENST00000485550	TXNDC5	Q8NBS9	432 aa	Known RBP	11.17	□□□□□ -0.62
HMGN1-215	ENST00000485550	CCDC26	Q8TAB7	109 aa		11.17	□□□□□ -0.62
HMGN1-215	ENST00000485550	WHAMM	Q8TF30	809 aa		11.17	□□□□□ -0.62
HMGN1-215	ENST00000485550	HMGB4	Q8WW32	186 aa		11.17	□□□□□ -0.62
HMGN1-215	ENST00000485550	OVCA2	Q8WZ82	227 aa		11.17	□□□□□ -0.62

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