RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 SMOC1Q9H4F8 434 aa14.26□□□□□ -0.13
CHD3-209ENST00000473376 APOBEC3GQ9HC16 384 aaKnown RBP14.26□□□□□ -0.13
CHD3-209ENST00000473376 FAM49BQ9NUQ9 324 aa14.26□□□□□ -0.13
CHD3-209ENST00000473376 DNAJC17Q9NVM6 304 aaKnown RBP14.26□□□□□ -0.13
CHD3-209ENST00000473376 HMGXB4Q9UGU5 601 aa14.26□□□□□ -0.13
CHD3-209ENST00000473376 MBD1Q9UIS9 605 aaPredicted RBP14.26□□□□□ -0.13
CHD3-209ENST00000473376 NFE2L3Q9Y4A8 694 aa14.26□□□□□ -0.13
CHD3-209ENST00000473376 PLXND1Q9Y4D7 1925 aa14.25□□□□□ -0.13
CHD3-209ENST00000473376 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.25□□□□□ -0.13
CHD3-209ENST00000473376 A0A1W2PQF6 199 aa14.25□□□□□ -0.13
CHD3-209ENST00000473376 TBX18O95935 607 aa14.25□□□□□ -0.13
CHD3-209ENST00000473376 PENKP01210 267 aaPredicted RBP14.25□□□□□ -0.13
CHD3-209ENST00000473376 CISD3P0C7P0 127 aa14.25□□□□□ -0.13
CHD3-209ENST00000473376 C7P10643 843 aa14.25□□□□□ -0.13
CHD3-209ENST00000473376 RARGP13631 454 aa14.25□□□□□ -0.13
CHD3-209ENST00000473376 HOXB2P14652 356 aa14.25□□□□□ -0.13
CHD3-209ENST00000473376 GABRG2P18507 467 aa14.25□□□□□ -0.13
CHD3-209ENST00000473376 GCLMP48507 274 aa14.25□□□□□ -0.13
CHD3-209ENST00000473376 DGKGP49619 791 aa14.25□□□□□ -0.13
CHD3-209ENST00000473376 PGFP49763 221 aa14.25□□□□□ -0.13
CHD3-209ENST00000473376 NOVA1P51513 510 aaKnown RBP14.25□□□□□ -0.13
CHD3-209ENST00000473376 NDUFA8P51970 172 aa14.25□□□□□ -0.13
CHD3-209ENST00000473376 SLC8A3P57103 927 aa14.25□□□□□ -0.13
CHD3-209ENST00000473376 KDSRQ06136 332 aa14.25□□□□□ -0.13
CHD3-209ENST00000473376 PPP3CAQ08209 521 aa14.25□□□□□ -0.13
CHD3-209ENST00000473376 ENPP2Q13822 863 aa14.25□□□□□ -0.13
CHD3-209ENST00000473376 HNRNPDQ14103 355 aaKnown RBP14.25□□□□□ -0.13
CHD3-209ENST00000473376 DUOXA1Q1HG43 343 aa14.25□□□□□ -0.13
CHD3-209ENST00000473376 TRIM61Q5EBN2 209 aa14.25□□□□□ -0.13
CHD3-209ENST00000473376 ARHGAP17Q68EM7 881 aa14.25□□□□□ -0.13
CHD3-209ENST00000473376 SPOPLQ6IQ16 392 aa14.25□□□□□ -0.13
CHD3-209ENST00000473376 PSAPL1Q6NUJ1 521 aa14.25□□□□□ -0.13
CHD3-209ENST00000473376 KRBA2Q6ZNG9 492 aa14.25□□□□□ -0.13
CHD3-209ENST00000473376 NAT16Q8N8M0 369 aa14.25□□□□□ -0.13
CHD3-209ENST00000473376 FBXL13Q8NEE6 735 aa14.25□□□□□ -0.13
CHD3-209ENST00000473376 HMGB4Q8WW32 186 aa14.25□□□□□ -0.13
CHD3-209ENST00000473376 PIGKQ92643 395 aa14.25□□□□□ -0.13
CHD3-209ENST00000473376 CHAMP1Q96JM3 812 aa14.25□□□□□ -0.13
CHD3-209ENST00000473376 TWNKQ96RR1 684 aa14.25□□□□□ -0.13
CHD3-209ENST00000473376 OSER1Q9NX31 292 aa14.25□□□□□ -0.13
CHD3-209ENST00000473376 INVSQ9Y283 1065 aa14.25□□□□□ -0.13
CHD3-209ENST00000473376 CHD8Q9HCK8 2581 aa14.25□□□□□ -0.13
CHD3-209ENST00000473376 ABCA7Q8IZY2 2146 aa14.24□□□□□ -0.13
CHD3-209ENST00000473376 ANTXRLA6NF34 631 aa14.24□□□□□ -0.13
CHD3-209ENST00000473376 NEDD8-MDP1E9PL57 170 aa14.24□□□□□ -0.13
CHD3-209ENST00000473376 SCAMP3O14828 347 aaKnown RBP14.24□□□□□ -0.13
CHD3-209ENST00000473376 CYP26A1O43174 497 aa14.24□□□□□ -0.13
CHD3-209ENST00000473376 SERPINF2P08697 491 aa14.24□□□□□ -0.13
CHD3-209ENST00000473376 ADORA2BP29275 332 aa14.24□□□□□ -0.13
CHD3-209ENST00000473376 PTGER3P43115 390 aa14.24□□□□□ -0.13
CHD3-209ENST00000473376 ZNF445P59923 1031 aa14.24□□□□□ -0.13
CHD3-209ENST00000473376 EIF4HQ15056 248 aaKnown RBP14.24□□□□□ -0.13
CHD3-209ENST00000473376 RAB41Q5JT25 222 aa14.24□□□□□ -0.13
CHD3-209ENST00000473376 C10orf120Q5SQS8 335 aa14.24□□□□□ -0.13
CHD3-209ENST00000473376 GPRIN1Q7Z2K8 1008 aa14.24□□□□□ -0.13
CHD3-209ENST00000473376 PGBD3Q8N328 593 aa14.24□□□□□ -0.13
CHD3-209ENST00000473376 CPXM2Q8N436 756 aa14.24□□□□□ -0.13
CHD3-209ENST00000473376 ANKRD52Q8NB46 1076 aa14.24□□□□□ -0.13
CHD3-209ENST00000473376 IPO4Q8TEX9 1081 aaKnown RBP14.24□□□□□ -0.13
CHD3-209ENST00000473376 FOXJ1Q92949 421 aa14.24□□□□□ -0.13
CHD3-209ENST00000473376 WBP2Q969T9 261 aa14.24□□□□□ -0.13
CHD3-209ENST00000473376 TMEM176AQ96HP8 235 aa14.24□□□□□ -0.13
CHD3-209ENST00000473376 SLC2A11Q9BYW1 496 aa14.24□□□□□ -0.13
CHD3-209ENST00000473376 IRX2Q9BZI1 471 aaPredicted RBP14.24□□□□□ -0.13
CHD3-209ENST00000473376 SLC32A1Q9H598 525 aa14.24□□□□□ -0.13
CHD3-209ENST00000473376 NMUR1Q9HB89 426 aa14.24□□□□□ -0.13
CHD3-209ENST00000473376 RMND1Q9NWS8 449 aa14.24□□□□□ -0.13
CHD3-209ENST00000473376 RAB20Q9NX57 234 aa14.24□□□□□ -0.13
CHD3-209ENST00000473376 HCN2Q9UL51 889 aa14.24□□□□□ -0.13
CHD3-209ENST00000473376 SLC6A14Q9UN76 642 aa14.24□□□□□ -0.13
CHD3-209ENST00000473376 WASF3Q9UPY6 502 aa14.24□□□□□ -0.13
CHD3-209ENST00000473376 COQ4Q9Y3A0 265 aa14.24□□□□□ -0.13
CHD3-209ENST00000473376 LAMA1P25391 3075 aa14.23□□□□□ -0.13
CHD3-209ENST00000473376 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa14.23□□□□□ -0.13
CHD3-209ENST00000473376 A0A1W2PQH9 124 aa14.23□□□□□ -0.13
CHD3-209ENST00000473376 TMEM8BA6NDV4 472 aa14.23□□□□□ -0.13
CHD3-209ENST00000473376 CETN3O15182 167 aa14.23□□□□□ -0.13
CHD3-209ENST00000473376 TIMM44O43615 452 aa14.23□□□□□ -0.13
CHD3-209ENST00000473376 STC2O76061 302 aa14.23□□□□□ -0.13
CHD3-209ENST00000473376 ZNF202O95125 648 aa14.23□□□□□ -0.13
CHD3-209ENST00000473376 PDE4CQ08493 712 aa14.23□□□□□ -0.13
CHD3-209ENST00000473376 SLC14A1Q13336 389 aa14.23□□□□□ -0.13
CHD3-209ENST00000473376 PPP1R26Q5T8A7 1209 aaPredicted RBP14.23□□□□□ -0.13
CHD3-209ENST00000473376 SH3PXD2AQ5TCZ1 1133 aa14.23□□□□□ -0.13
CHD3-209ENST00000473376 PM20D1Q6GTS8 502 aa14.23□□□□□ -0.13
CHD3-209ENST00000473376 SCD5Q86SK9 330 aa14.23□□□□□ -0.13
CHD3-209ENST00000473376 FAM217AQ8IXS0 508 aa14.23□□□□□ -0.13
CHD3-209ENST00000473376 TMEFF1Q8IYR6 380 aa14.23□□□□□ -0.13
CHD3-209ENST00000473376 CHPFQ8IZ52 775 aa14.23□□□□□ -0.13
CHD3-209ENST00000473376 SCML4Q8N228 414 aa14.23□□□□□ -0.13
CHD3-209ENST00000473376 RLN3Q8WXF3 142 aa14.23□□□□□ -0.13
CHD3-209ENST00000473376 ZNF419Q96HQ0 510 aaPredicted RBP14.23□□□□□ -0.13
CHD3-209ENST00000473376 GSDMAQ96QA5 445 aa14.23□□□□□ -0.13
CHD3-209ENST00000473376 CAPN10Q9HC96 672 aa14.23□□□□□ -0.13
CHD3-209ENST00000473376 TMEM74BQ9NUR3 256 aa14.23□□□□□ -0.13
CHD3-209ENST00000473376 CALCOCO1Q9P1Z2 691 aa14.23□□□□□ -0.13
CHD3-209ENST00000473376 SUSD2Q9UGT4 822 aa14.23□□□□□ -0.13
CHD3-209ENST00000473376 NAGPAQ9UK23 515 aa14.23□□□□□ -0.13
CHD3-209ENST00000473376 KIAA1257Q9ULG3 409 aa14.23□□□□□ -0.13
CHD3-209ENST00000473376 ZDHHC9Q9Y397 364 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms