RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 DUSP16Q9BY84 665 aa20.8■□□□□ 0.92
COL9A3-210ENST00000472880 MARK1Q9P0L2 795 aa20.8■□□□□ 0.92
COL9A3-210ENST00000472880 NUDT5Q9UKK9 219 aa20.8■□□□□ 0.92
COL9A3-210ENST00000472880 PLXND1Q9Y4D7 1925 aa20.79■□□□□ 0.92
COL9A3-210ENST00000472880 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa20.79■□□□□ 0.92
COL9A3-210ENST00000472880 PATE3B3GLJ2 98 aa20.79■□□□□ 0.92
COL9A3-210ENST00000472880 KCNK5O95279 499 aa20.79■□□□□ 0.92
COL9A3-210ENST00000472880 RALAP11233 206 aa20.79■□□□□ 0.92
COL9A3-210ENST00000472880 NTSR1P30989 418 aa20.79■□□□□ 0.92
COL9A3-210ENST00000472880 MAP7D1Q3KQU3 841 aa20.79■□□□□ 0.92
COL9A3-210ENST00000472880 SDE2Q6IQ49 451 aa20.79■□□□□ 0.92
COL9A3-210ENST00000472880 SMYD4Q8IYR2 804 aaPredicted RBP20.79■□□□□ 0.92
COL9A3-210ENST00000472880 TMEFF1Q8IYR6 380 aa20.79■□□□□ 0.92
COL9A3-210ENST00000472880 ABCA7Q8IZY2 2146 aa20.79■□□□□ 0.92
COL9A3-210ENST00000472880 FBXL13Q8NEE6 735 aa20.79■□□□□ 0.92
COL9A3-210ENST00000472880 EEF2KMTQ96G04 330 aa20.79■□□□□ 0.92
COL9A3-210ENST00000472880 FAXDC2Q96IV6 333 aa20.79■□□□□ 0.92
COL9A3-210ENST00000472880 HEXIM2Q96MH2 286 aaKnown RBP20.79■□□□□ 0.92
COL9A3-210ENST00000472880 CDK5RAP1Q96SZ6 601 aaKnown RBP20.79■□□□□ 0.92
COL9A3-210ENST00000472880 GDPD2Q9HCC8 539 aa20.79■□□□□ 0.92
COL9A3-210ENST00000472880 TMEM9BQ9NQ34 198 aa20.79■□□□□ 0.92
COL9A3-210ENST00000472880 RMND1Q9NWS8 449 aa20.79■□□□□ 0.92
COL9A3-210ENST00000472880 ANGPTL2Q9UKU9 493 aa20.79■□□□□ 0.92
COL9A3-210ENST00000472880 STARD13Q9Y3M8 1113 aa20.79■□□□□ 0.92
COL9A3-210ENST00000472880 CETN3O15182 167 aa20.78■□□□□ 0.92
COL9A3-210ENST00000472880 ZBTB24O43167 697 aaPredicted RBP20.78■□□□□ 0.92
COL9A3-210ENST00000472880 PMLP29590 882 aa20.78■□□□□ 0.92
COL9A3-210ENST00000472880 WASP42768 502 aa20.78■□□□□ 0.92
COL9A3-210ENST00000472880 DGKGP49619 791 aa20.78■□□□□ 0.92
COL9A3-210ENST00000472880 EGFLAMQ63HQ2 1017 aa20.78■□□□□ 0.92
COL9A3-210ENST00000472880 PSAPL1Q6NUJ1 521 aa20.78■□□□□ 0.92
COL9A3-210ENST00000472880 MIB1Q86YT6 1006 aa20.78■□□□□ 0.92
COL9A3-210ENST00000472880 CHPFQ8IZ52 775 aa20.78■□□□□ 0.92
COL9A3-210ENST00000472880 FRMD1Q8N878 549 aa20.78■□□□□ 0.92
COL9A3-210ENST00000472880 SEMA4DQ92854 862 aa20.78■□□□□ 0.92
COL9A3-210ENST00000472880 BHMTQ93088 406 aa20.78■□□□□ 0.92
COL9A3-210ENST00000472880 CISHQ9NSE2 258 aa20.78■□□□□ 0.92
COL9A3-210ENST00000472880 RAB20Q9NX57 234 aa20.78■□□□□ 0.92
COL9A3-210ENST00000472880 CLIC5Q9NZA1 410 aa20.78■□□□□ 0.92
COL9A3-210ENST00000472880 MBD1Q9UIS9 605 aaPredicted RBP20.78■□□□□ 0.92
COL9A3-210ENST00000472880 RASAL2Q9UJF2 1139 aa20.78■□□□□ 0.92
COL9A3-210ENST00000472880 TNRC6BQ9UPQ9 1833 aaKnown RBP20.77■□□□□ 0.92
COL9A3-210ENST00000472880 GABRG2P18507 467 aa20.77■□□□□ 0.92
COL9A3-210ENST00000472880 DPP6P42658 865 aa20.77■□□□□ 0.92
COL9A3-210ENST00000472880 PTGER3P43115 390 aa20.77■□□□□ 0.92
COL9A3-210ENST00000472880 NOVA1P51513 510 aaKnown RBP20.77■□□□□ 0.92
COL9A3-210ENST00000472880 PNOCQ13519 176 aa20.77■□□□□ 0.92
COL9A3-210ENST00000472880 TRIM61Q5EBN2 209 aa20.77■□□□□ 0.92
COL9A3-210ENST00000472880 SPDYCQ5MJ68 293 aa20.77■□□□□ 0.92
COL9A3-210ENST00000472880 TCERG1LQ5VWI1 586 aa20.77■□□□□ 0.92
COL9A3-210ENST00000472880 LYSMD4Q5XG99 296 aa20.77■□□□□ 0.92
COL9A3-210ENST00000472880 Q6ZNB5 142 aa20.77■□□□□ 0.92
COL9A3-210ENST00000472880 SCD5Q86SK9 330 aa20.77■□□□□ 0.92
COL9A3-210ENST00000472880 TMEM176AQ96HP8 235 aa20.77■□□□□ 0.92
COL9A3-210ENST00000472880 TSG101Q99816 390 aa20.77■□□□□ 0.92
COL9A3-210ENST00000472880 NUSAP1Q9BXS6 441 aaKnown RBP20.77■□□□□ 0.92
COL9A3-210ENST00000472880 CALCOCO1Q9P1Z2 691 aa20.77■□□□□ 0.92
COL9A3-210ENST00000472880 EVLQ9UI08 416 aaPredicted RBP20.77■□□□□ 0.92
COL9A3-210ENST00000472880 USP3Q9Y6I4 520 aa20.77■□□□□ 0.92
COL9A3-210ENST00000472880 AP5Z1O43299 807 aa20.76■□□□□ 0.91
COL9A3-210ENST00000472880 STC2O76061 302 aa20.76■□□□□ 0.91
COL9A3-210ENST00000472880 SLC8A3P57103 927 aa20.76■□□□□ 0.91
COL9A3-210ENST00000472880 IRX4P78413 519 aa20.76■□□□□ 0.91
COL9A3-210ENST00000472880 LMAN2Q12907 356 aa20.76■□□□□ 0.91
COL9A3-210ENST00000472880 DCAF17Q5H9S7 520 aaPredicted RBP20.76■□□□□ 0.91
COL9A3-210ENST00000472880 TOGARAM2Q6ZUX3 1019 aa20.76■□□□□ 0.91
COL9A3-210ENST00000472880 SYT12Q8IV01 421 aa20.76■□□□□ 0.91
COL9A3-210ENST00000472880 ARHGAP18Q8N392 663 aa20.76■□□□□ 0.91
COL9A3-210ENST00000472880 ZNF276Q8N554 614 aa20.76■□□□□ 0.91
COL9A3-210ENST00000472880 SLC4A11Q8NBS3 891 aa20.76■□□□□ 0.91
COL9A3-210ENST00000472880 ARID3AQ99856 593 aa20.76■□□□□ 0.91
COL9A3-210ENST00000472880 FAM124BQ9H5Z6 455 aaPredicted RBP20.76■□□□□ 0.91
COL9A3-210ENST00000472880 HCN2Q9UL51 889 aa20.76■□□□□ 0.91
COL9A3-210ENST00000472880 ZNF510Q9Y2H8 683 aa20.76■□□□□ 0.91
COL9A3-210ENST00000472880 ATXN2Q99700 1313 aaKnown RBP20.76■□□□□ 0.91
COL9A3-210ENST00000472880 ACACBO00763 2458 aa20.75■□□□□ 0.91
COL9A3-210ENST00000472880 A0A1W2PQF6 199 aa20.75■□□□□ 0.91
COL9A3-210ENST00000472880 RAD23BP54727 409 aa20.75■□□□□ 0.91
COL9A3-210ENST00000472880 MCCD1P59942 119 aaPredicted RBP20.75■□□□□ 0.91
COL9A3-210ENST00000472880 COG7P83436 770 aa20.75■□□□□ 0.91
COL9A3-210ENST00000472880 RPL6Q02878 288 aaKnown RBP20.75■□□□□ 0.91
COL9A3-210ENST00000472880 EFEMP1Q12805 493 aa20.75■□□□□ 0.91
COL9A3-210ENST00000472880 ST3GAL2Q16842 350 aa20.75■□□□□ 0.91
COL9A3-210ENST00000472880 SLC36A4Q6YBV0 504 aa20.75■□□□□ 0.91
COL9A3-210ENST00000472880 IPO4Q8TEX9 1081 aaKnown RBP20.75■□□□□ 0.91
COL9A3-210ENST00000472880 ACOX2Q99424 681 aa20.75■□□□□ 0.91
COL9A3-210ENST00000472880 DCLK3Q9C098 648 aa20.75■□□□□ 0.91
COL9A3-210ENST00000472880 PLK2Q9NYY3 685 aa20.75■□□□□ 0.91
COL9A3-210ENST00000472880 GOLGA6L4A6NEF3 574 aa20.74■□□□□ 0.91
COL9A3-210ENST00000472880 PRRT4C9JH25 899 aa20.74■□□□□ 0.91
COL9A3-210ENST00000472880 SLC16A3O15427 465 aaKnown RBP20.74■□□□□ 0.91
COL9A3-210ENST00000472880 HMBSP08397 361 aa20.74■□□□□ 0.91
COL9A3-210ENST00000472880 PRCPP42785 496 aa20.74■□□□□ 0.91
COL9A3-210ENST00000472880 ARHGAP17Q68EM7 881 aa20.74■□□□□ 0.91
COL9A3-210ENST00000472880 RSRC2Q7L4I2 434 aaKnown RBP20.74■□□□□ 0.91
COL9A3-210ENST00000472880 PIGZQ86VD9 579 aa20.74■□□□□ 0.91
COL9A3-210ENST00000472880 GABRG3Q99928 467 aa20.74■□□□□ 0.91
COL9A3-210ENST00000472880 STRIP2Q9ULQ0 834 aa20.74■□□□□ 0.91
COL9A3-210ENST00000472880 CNOT1A5YKK6 2376 aaKnown RBP20.74■□□□□ 0.91
COL9A3-210ENST00000472880 TPRP12270 2363 aaKnown RBP20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms