RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 RLN3Q8WXF3 142 aa18.42■□□□□ 0.54
COL7A1-208ENST00000470076 BBS2Q9BXC9 721 aa18.42■□□□□ 0.54
COL7A1-208ENST00000470076 DUSP16Q9BY84 665 aa18.42■□□□□ 0.54
COL7A1-208ENST00000470076 GOLPH3LQ9H4A5 285 aa18.42■□□□□ 0.54
COL7A1-208ENST00000470076 DNAJC17Q9NVM6 304 aaKnown RBP18.42■□□□□ 0.54
COL7A1-208ENST00000470076 PI4KAP42356 2102 aa18.41■□□□□ 0.54
COL7A1-208ENST00000470076 C4orf47A7E2U8 309 aa18.41■□□□□ 0.54
COL7A1-208ENST00000470076 NEDD8-MDP1E9PL57 170 aa18.41■□□□□ 0.54
COL7A1-208ENST00000470076 STX10O60499 249 aa18.41■□□□□ 0.54
COL7A1-208ENST00000470076 HOXB2P14652 356 aa18.41■□□□□ 0.54
COL7A1-208ENST00000470076 TYRP14679 529 aa18.41■□□□□ 0.54
COL7A1-208ENST00000470076 PMLP29590 882 aa18.41■□□□□ 0.54
COL7A1-208ENST00000470076 NTSR1P30989 418 aa18.41■□□□□ 0.54
COL7A1-208ENST00000470076 MAP7D1Q3KQU3 841 aa18.41■□□□□ 0.54
COL7A1-208ENST00000470076 C10orf120Q5SQS8 335 aa18.41■□□□□ 0.54
COL7A1-208ENST00000470076 PPP1R26Q5T8A7 1209 aaPredicted RBP18.41■□□□□ 0.54
COL7A1-208ENST00000470076 FBXL13Q8NEE6 735 aa18.41■□□□□ 0.54
COL7A1-208ENST00000470076 PIGKQ92643 395 aa18.41■□□□□ 0.54
COL7A1-208ENST00000470076 CDK5RAP1Q96SZ6 601 aaKnown RBP18.41■□□□□ 0.54
COL7A1-208ENST00000470076 FAM124BQ9H5Z6 455 aaPredicted RBP18.41■□□□□ 0.54
COL7A1-208ENST00000470076 TMEM9BQ9NQ34 198 aa18.41■□□□□ 0.54
COL7A1-208ENST00000470076 CLIC5Q9NZA1 410 aa18.41■□□□□ 0.54
COL7A1-208ENST00000470076 EVLQ9UI08 416 aaPredicted RBP18.41■□□□□ 0.54
COL7A1-208ENST00000470076 NAGPAQ9UK23 515 aa18.41■□□□□ 0.54
COL7A1-208ENST00000470076 ANGPTL2Q9UKU9 493 aa18.41■□□□□ 0.54
COL7A1-208ENST00000470076 USP3Q9Y6I4 520 aa18.41■□□□□ 0.54
COL7A1-208ENST00000470076 TNRC6BQ9UPQ9 1833 aaKnown RBP18.41■□□□□ 0.54
COL7A1-208ENST00000470076 TRIM24O15164 1050 aa18.4■□□□□ 0.54
COL7A1-208ENST00000470076 RALAP11233 206 aa18.4■□□□□ 0.54
COL7A1-208ENST00000470076 DPP6P42658 865 aa18.4■□□□□ 0.54
COL7A1-208ENST00000470076 MXI1P50539 228 aa18.4■□□□□ 0.54
COL7A1-208ENST00000470076 SDE2Q6IQ49 451 aa18.4■□□□□ 0.54
COL7A1-208ENST00000470076 TPGS1Q6ZTW0 290 aa18.4■□□□□ 0.54
COL7A1-208ENST00000470076 HEXIM2Q96MH2 286 aaKnown RBP18.4■□□□□ 0.54
COL7A1-208ENST00000470076 RAB20Q9NX57 234 aa18.4■□□□□ 0.54
COL7A1-208ENST00000470076 MBD1Q9UIS9 605 aaPredicted RBP18.4■□□□□ 0.54
COL7A1-208ENST00000470076 NUDT5Q9UKK9 219 aa18.4■□□□□ 0.54
COL7A1-208ENST00000470076 HCN2Q9UL51 889 aa18.4■□□□□ 0.54
COL7A1-208ENST00000470076 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa18.39■□□□□ 0.53
COL7A1-208ENST00000470076 PATE3B3GLJ2 98 aa18.39■□□□□ 0.53
COL7A1-208ENST00000470076 MDM4O15151 490 aa18.39■□□□□ 0.53
COL7A1-208ENST00000470076 CETN3O15182 167 aa18.39■□□□□ 0.53
COL7A1-208ENST00000470076 ZBTB24O43167 697 aaPredicted RBP18.39■□□□□ 0.53
COL7A1-208ENST00000470076 EPB41P11171 864 aaKnown RBP18.39■□□□□ 0.53
COL7A1-208ENST00000470076 ZNF394Q53GI3 561 aa18.39■□□□□ 0.53
COL7A1-208ENST00000470076 Q6ZNB5 142 aa18.39■□□□□ 0.53
COL7A1-208ENST00000470076 SCD5Q86SK9 330 aa18.39■□□□□ 0.53
COL7A1-208ENST00000470076 SYT12Q8IV01 421 aa18.39■□□□□ 0.53
COL7A1-208ENST00000470076 TMEFF1Q8IYR6 380 aa18.39■□□□□ 0.53
COL7A1-208ENST00000470076 CHPFQ8IZ52 775 aa18.39■□□□□ 0.53
COL7A1-208ENST00000470076 FRMD1Q8N878 549 aa18.39■□□□□ 0.53
COL7A1-208ENST00000470076 SEMA4DQ92854 862 aa18.39■□□□□ 0.53
COL7A1-208ENST00000470076 UBXN6Q9BZV1 441 aa18.39■□□□□ 0.53
COL7A1-208ENST00000470076 CISHQ9NSE2 258 aa18.39■□□□□ 0.53
COL7A1-208ENST00000470076 RMND1Q9NWS8 449 aa18.39■□□□□ 0.53
COL7A1-208ENST00000470076 ZNF510Q9Y2H8 683 aa18.39■□□□□ 0.53
COL7A1-208ENST00000470076 CEP192Q8TEP8 1941 aa18.39■□□□□ 0.53
COL7A1-208ENST00000470076 STC2O76061 302 aa18.38■□□□□ 0.53
COL7A1-208ENST00000470076 GABRG2P18507 467 aa18.38■□□□□ 0.53
COL7A1-208ENST00000470076 PTGER3P43115 390 aa18.38■□□□□ 0.53
COL7A1-208ENST00000470076 DGKGP49619 791 aa18.38■□□□□ 0.53
COL7A1-208ENST00000470076 IRX4P78413 519 aa18.38■□□□□ 0.53
COL7A1-208ENST00000470076 COG7P83436 770 aa18.38■□□□□ 0.53
COL7A1-208ENST00000470076 SHC2P98077 582 aa18.38■□□□□ 0.53
COL7A1-208ENST00000470076 LMAN2Q12907 356 aa18.38■□□□□ 0.53
COL7A1-208ENST00000470076 LYSMD4Q5XG99 296 aa18.38■□□□□ 0.53
COL7A1-208ENST00000470076 EGFLAMQ63HQ2 1017 aa18.38■□□□□ 0.53
COL7A1-208ENST00000470076 PSAPL1Q6NUJ1 521 aa18.38■□□□□ 0.53
COL7A1-208ENST00000470076 SLC36A4Q6YBV0 504 aa18.38■□□□□ 0.53
COL7A1-208ENST00000470076 ARMCX6Q7L4S7 300 aa18.38■□□□□ 0.53
COL7A1-208ENST00000470076 MIB1Q86YT6 1006 aa18.38■□□□□ 0.53
COL7A1-208ENST00000470076 SMYD4Q8IYR2 804 aaPredicted RBP18.38■□□□□ 0.53
COL7A1-208ENST00000470076 ARHGAP18Q8N392 663 aa18.38■□□□□ 0.53
COL7A1-208ENST00000470076 SLC4A11Q8NBS3 891 aa18.38■□□□□ 0.53
COL7A1-208ENST00000470076 EEF2KMTQ96G04 330 aa18.38■□□□□ 0.53
COL7A1-208ENST00000470076 TMEM176AQ96HP8 235 aa18.38■□□□□ 0.53
COL7A1-208ENST00000470076 NUSAP1Q9BXS6 441 aaKnown RBP18.38■□□□□ 0.53
COL7A1-208ENST00000470076 USP24Q9UPU5 2620 aa18.38■□□□□ 0.53
COL7A1-208ENST00000470076 ASCC3Q8N3C0 2202 aaKnown RBP18.37■□□□□ 0.53
COL7A1-208ENST00000470076 A0A1W2PQF6 199 aa18.37■□□□□ 0.53
COL7A1-208ENST00000470076 PRRT4C9JH25 899 aa18.37■□□□□ 0.53
COL7A1-208ENST00000470076 CDX4O14627 284 aaPredicted RBP18.37■□□□□ 0.53
COL7A1-208ENST00000470076 AP5Z1O43299 807 aa18.37■□□□□ 0.53
COL7A1-208ENST00000470076 HOXD12P35452 270 aa18.37■□□□□ 0.53
COL7A1-208ENST00000470076 CHKAP35790 457 aa18.37■□□□□ 0.53
COL7A1-208ENST00000470076 WASP42768 502 aa18.37■□□□□ 0.53
COL7A1-208ENST00000470076 NOVA1P51513 510 aaKnown RBP18.37■□□□□ 0.53
COL7A1-208ENST00000470076 RAD23BP54727 409 aa18.37■□□□□ 0.53
COL7A1-208ENST00000470076 SLC8A3P57103 927 aa18.37■□□□□ 0.53
COL7A1-208ENST00000470076 TRIM61Q5EBN2 209 aa18.37■□□□□ 0.53
COL7A1-208ENST00000470076 ARHGAP17Q68EM7 881 aa18.37■□□□□ 0.53
COL7A1-208ENST00000470076 TOGARAM2Q6ZUX3 1019 aa18.37■□□□□ 0.53
COL7A1-208ENST00000470076 GABRG3Q99928 467 aa18.37■□□□□ 0.53
COL7A1-208ENST00000470076 DCLK3Q9C098 648 aa18.37■□□□□ 0.53
COL7A1-208ENST00000470076 GDPD2Q9HCC8 539 aa18.37■□□□□ 0.53
COL7A1-208ENST00000470076 CALCOCO1Q9P1Z2 691 aa18.37■□□□□ 0.53
COL7A1-208ENST00000470076 GFRA2O00451 464 aa18.36■□□□□ 0.53
COL7A1-208ENST00000470076 ZNF217O75362 1048 aa18.36■□□□□ 0.53
COL7A1-208ENST00000470076 CISD3P0C7P0 127 aa18.36■□□□□ 0.53
COL7A1-208ENST00000470076 RPL6Q02878 288 aaKnown RBP18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms