RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 FAM47CQ5HY64 1035 aa19.82■□□□□ 0.76
VIM-203ENST00000469543 SLC9A4Q6AI14 798 aa19.82■□□□□ 0.76
VIM-203ENST00000469543 CTU1Q7Z7A3 348 aaKnown RBP19.82■□□□□ 0.76
VIM-203ENST00000469543 MECRQ9BV79 373 aa19.82■□□□□ 0.76
VIM-203ENST00000469543 ZC3H7BQ9UGR2 993 aaKnown RBP19.82■□□□□ 0.76
VIM-203ENST00000469543 KIAA1257Q9ULG3 409 aa19.82■□□□□ 0.76
VIM-203ENST00000469543 IKBKGQ9Y6K9 419 aa19.82■□□□□ 0.76
VIM-203ENST00000469543 INHBAP08476 426 aa19.82■□□□□ 0.76
VIM-203ENST00000469543 T-ENOLP0DO92 83 aa19.82■□□□□ 0.76
VIM-203ENST00000469543 BEX3Q00994 111 aa19.82■□□□□ 0.76
VIM-203ENST00000469543 KCNT2Q6UVM3 1135 aa19.82■□□□□ 0.76
VIM-203ENST00000469543 MTDHQ86UE4 582 aaKnown RBP19.82■□□□□ 0.76
VIM-203ENST00000469543 AGAP11Q8TF27 550 aa19.82■□□□□ 0.76
VIM-203ENST00000469543 SLC13A1Q9BZW2 595 aa19.82■□□□□ 0.76
VIM-203ENST00000469543 ARHGEF3Q9NR81 526 aa19.82■□□□□ 0.76
VIM-203ENST00000469543 KANSL3Q9P2N6 904 aa19.82■□□□□ 0.76
VIM-203ENST00000469543 A0A0G2JND7 137 aa19.81■□□□□ 0.76
VIM-203ENST00000469543 UNC5CO95185 931 aa19.81■□□□□ 0.76
VIM-203ENST00000469543 CYP2C9P11712 490 aa19.81■□□□□ 0.76
VIM-203ENST00000469543 AFF1P51825 1210 aaKnown RBP19.81■□□□□ 0.76
VIM-203ENST00000469543 FBXO47Q5MNV8 452 aa19.81■□□□□ 0.76
VIM-203ENST00000469543 ALKAL1Q6UXT8 129 aa19.81■□□□□ 0.76
VIM-203ENST00000469543 SH2D5Q6ZV89 423 aa19.81■□□□□ 0.76
VIM-203ENST00000469543 C10orf82Q8WW14 230 aa19.81■□□□□ 0.76
VIM-203ENST00000469543 SLC44A1Q8WWI5 657 aa19.81■□□□□ 0.76
VIM-203ENST00000469543 PRR11Q96HE9 360 aaPredicted RBP19.81■□□□□ 0.76
VIM-203ENST00000469543 TBCBQ99426 244 aa19.81■□□□□ 0.76
VIM-203ENST00000469543 GCOM2Q9BZD3 368 aaPredicted RBP19.81■□□□□ 0.76
VIM-203ENST00000469543 KPNA7A9QM74 516 aa19.81■□□□□ 0.76
VIM-203ENST00000469543 CYB561D2O14569 222 aa19.81■□□□□ 0.76
VIM-203ENST00000469543 SLC18A1P54219 525 aa19.81■□□□□ 0.76
VIM-203ENST00000469543 PDK2Q15119 407 aa19.81■□□□□ 0.76
VIM-203ENST00000469543 SWT1Q5T5J6 900 aaKnown RBP19.81■□□□□ 0.76
VIM-203ENST00000469543 ZC3H15Q8WU90 426 aaKnown RBP19.81■□□□□ 0.76
VIM-203ENST00000469543 FAM149B1Q96BN6 582 aa19.81■□□□□ 0.76
VIM-203ENST00000469543 ZFP42Q96MM3 310 aa19.81■□□□□ 0.76
VIM-203ENST00000469543 MANSC1Q9H8J5 431 aa19.81■□□□□ 0.76
VIM-203ENST00000469543 SPON1Q9HCB6 807 aa19.81■□□□□ 0.76
VIM-203ENST00000469543 IL1RAPL1Q9NZN1 696 aa19.81■□□□□ 0.76
VIM-203ENST00000469543 FLRT1Q9NZU1 646 aa19.81■□□□□ 0.76
VIM-203ENST00000469543 TRIM49D1C9J1S8 452 aa19.8■□□□□ 0.76
VIM-203ENST00000469543 STRNO43815 780 aa19.8■□□□□ 0.76
VIM-203ENST00000469543 ZWINTO95229 277 aa19.8■□□□□ 0.76
VIM-203ENST00000469543 BGNP21810 368 aa19.8■□□□□ 0.76
VIM-203ENST00000469543 TAF1BQ53T94 588 aaPredicted RBP19.8■□□□□ 0.76
VIM-203ENST00000469543 ZNF410Q86VK4 478 aa19.8■□□□□ 0.76
VIM-203ENST00000469543 GRAMD1AQ96CP6 724 aa19.8■□□□□ 0.76
VIM-203ENST00000469543 KCTD15Q96SI1 283 aaPredicted RBP19.8■□□□□ 0.76
VIM-203ENST00000469543 ABHD16BQ9H3Z7 469 aa19.8■□□□□ 0.76
VIM-203ENST00000469543 POPDC2Q9HBU9 364 aa19.8■□□□□ 0.76
VIM-203ENST00000469543 AP4E1Q9UPM8 1137 aa19.8■□□□□ 0.76
VIM-203ENST00000469543 TTLL3Q9Y4R7 772 aa19.8■□□□□ 0.76
VIM-203ENST00000469543 COL1A2P08123 1366 aa19.8■□□□□ 0.76
VIM-203ENST00000469543 SLC15A5A6NIM6 579 aa19.8■□□□□ 0.76
VIM-203ENST00000469543 STAU1O95793 577 aaKnown RBP19.8■□□□□ 0.76
VIM-203ENST00000469543 F7P08709 466 aaPredicted RBP19.8■□□□□ 0.76
VIM-203ENST00000469543 RDXP35241 583 aaKnown RBP19.8■□□□□ 0.76
VIM-203ENST00000469543 RASA2Q15283 850 aa19.8■□□□□ 0.76
VIM-203ENST00000469543 ZNF534Q76KX8 674 aa19.8■□□□□ 0.76
VIM-203ENST00000469543 GBP7Q8N8V2 638 aaPredicted RBP19.8■□□□□ 0.76
VIM-203ENST00000469543 BEST2Q8NFU1 509 aa19.8■□□□□ 0.76
VIM-203ENST00000469543 STAMBPL1Q96FJ0 436 aa19.8■□□□□ 0.76
VIM-203ENST00000469543 PAK5Q9P286 719 aa19.8■□□□□ 0.76
VIM-203ENST00000469543 CPA4Q9UI42 421 aa19.8■□□□□ 0.76
VIM-203ENST00000469543 USH1CQ9Y6N9 552 aa19.8■□□□□ 0.76
VIM-203ENST00000469543 PLXNB2O15031 1838 aa19.8■□□□□ 0.76
VIM-203ENST00000469543 CHADO15335 359 aa19.79■□□□□ 0.76
VIM-203ENST00000469543 DARSP14868 501 aaKnown RBP19.79■□□□□ 0.76
VIM-203ENST00000469543 ATP2A2P16615 1042 aaKnown RBP19.79■□□□□ 0.76
VIM-203ENST00000469543 OLIG2Q13516 323 aa19.79■□□□□ 0.76
VIM-203ENST00000469543 OLFML2BQ68BL8 750 aa19.79■□□□□ 0.76
VIM-203ENST00000469543 NOTUMQ6P988 496 aa19.79■□□□□ 0.76
VIM-203ENST00000469543 RGS9BPQ6ZS82 235 aa19.79■□□□□ 0.76
VIM-203ENST00000469543 ADAM32Q8TC27 787 aa19.79■□□□□ 0.76
VIM-203ENST00000469543 CSPG4P5Q96PW8 444 aa19.79■□□□□ 0.76
VIM-203ENST00000469543 CYLDQ9NQC7 956 aa19.79■□□□□ 0.76
VIM-203ENST00000469543 A6NJR5 290 aa19.79■□□□□ 0.76
VIM-203ENST00000469543 CSH1P0DML2 217 aa19.79■□□□□ 0.76
VIM-203ENST00000469543 CSH2P0DML3 217 aa19.79■□□□□ 0.76
VIM-203ENST00000469543 GRB14Q14449 540 aa19.79■□□□□ 0.76
VIM-203ENST00000469543 CCL14Q16627 93 aa19.79■□□□□ 0.76
VIM-203ENST00000469543 MROH9Q5TGP6 573 aa19.79■□□□□ 0.76
VIM-203ENST00000469543 BSPRYQ5W0U4 402 aa19.79■□□□□ 0.76
VIM-203ENST00000469543 UNC5AQ6ZN44 842 aa19.79■□□□□ 0.76
VIM-203ENST00000469543 DENND5BQ6ZUT9 1274 aa19.79■□□□□ 0.76
VIM-203ENST00000469543 DTLQ9NZJ0 730 aa19.79■□□□□ 0.76
VIM-203ENST00000469543 CFAP73A6NFT4 308 aa19.79■□□□□ 0.76
VIM-203ENST00000469543 PIRO00625 290 aa19.79■□□□□ 0.76
VIM-203ENST00000469543 NEFHP12036 1026 aa19.79■□□□□ 0.76
VIM-203ENST00000469543 KYAT1Q16773 422 aa19.79■□□□□ 0.76
VIM-203ENST00000469543 DCAF4L1Q3SXM0 396 aa19.79■□□□□ 0.76
VIM-203ENST00000469543 DCAF6Q58WW2 860 aa19.79■□□□□ 0.76
VIM-203ENST00000469543 CES4AQ5XG92 561 aa19.79■□□□□ 0.76
VIM-203ENST00000469543 NLRP9Q7RTR0 991 aa19.79■□□□□ 0.76
VIM-203ENST00000469543 ANKRD52Q8NB46 1076 aa19.79■□□□□ 0.76
VIM-203ENST00000469543 C11orf84Q9BUA3 381 aaPredicted RBP19.79■□□□□ 0.76
VIM-203ENST00000469543 PLEKHA5Q9HAU0 1116 aa19.79■□□□□ 0.76
VIM-203ENST00000469543 FBXO6Q9NRD1 293 aaPredicted RBP19.79■□□□□ 0.76
VIM-203ENST00000469543 TIMM13Q9Y5L4 95 aaPredicted RBP19.79■□□□□ 0.76
VIM-203ENST00000469543 ZNF638Q14966 1978 aaKnown RBP19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms