RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 FAM149B1Q96BN6 582 aa19.54■□□□□ 0.72
SHH-204ENST00000441114 PPP1R13BQ96KQ4 1090 aa19.54■□□□□ 0.72
SHH-204ENST00000441114 CPXM1Q96SM3 734 aa19.54■□□□□ 0.72
SHH-204ENST00000441114 NELL2Q99435 816 aa19.54■□□□□ 0.72
SHH-204ENST00000441114 LHX5Q9H2C1 402 aa19.54■□□□□ 0.72
SHH-204ENST00000441114 TBC1D14Q9P2M4 693 aa19.54■□□□□ 0.72
SHH-204ENST00000441114 SFMBT1Q9UHJ3 866 aa19.54■□□□□ 0.72
SHH-204ENST00000441114 LSM7Q9UK45 103 aaKnown RBP19.54■□□□□ 0.72
SHH-204ENST00000441114 STRIP2Q9ULQ0 834 aa19.54■□□□□ 0.72
SHH-204ENST00000441114 DAAM1Q9Y4D1 1078 aa19.54■□□□□ 0.72
SHH-204ENST00000441114 MMEP08473 750 aa19.53■□□□□ 0.72
SHH-204ENST00000441114 RPL34P49207 117 aaKnown RBP19.53■□□□□ 0.72
SHH-204ENST00000441114 MLLT6P55198 1093 aaPredicted RBP19.53■□□□□ 0.72
SHH-204ENST00000441114 UBASH3AP57075 661 aa19.53■□□□□ 0.72
SHH-204ENST00000441114 TMEM110Q86TL2 294 aa19.53■□□□□ 0.72
SHH-204ENST00000441114 CCDC105Q8IYK2 499 aa19.53■□□□□ 0.72
SHH-204ENST00000441114 SLC20A1Q8WUM9 679 aa19.53■□□□□ 0.72
SHH-204ENST00000441114 NOX5Q96PH1 765 aa19.53■□□□□ 0.72
SHH-204ENST00000441114 SYNCQ9H7C4 482 aa19.53■□□□□ 0.72
SHH-204ENST00000441114 OLA1Q9NTK5 396 aaKnown RBP19.53■□□□□ 0.72
SHH-204ENST00000441114 HCN4Q9Y3Q4 1203 aa19.53■□□□□ 0.72
SHH-204ENST00000441114 PAPSS1O43252 624 aaPredicted RBP19.52■□□□□ 0.72
SHH-204ENST00000441114 STC2O76061 302 aa19.52■□□□□ 0.72
SHH-204ENST00000441114 GJA4P35212 333 aa19.52■□□□□ 0.72
SHH-204ENST00000441114 COG7P83436 770 aa19.52■□□□□ 0.72
SHH-204ENST00000441114 NR1I3Q14994 352 aa19.52■□□□□ 0.72
SHH-204ENST00000441114 OR6B2Q6IFH4 312 aa19.52■□□□□ 0.72
SHH-204ENST00000441114 FMNL3Q8IVF7 1028 aa19.52■□□□□ 0.72
SHH-204ENST00000441114 ADGRG2Q8IZP9 1017 aa19.52■□□□□ 0.72
SHH-204ENST00000441114 TMEM35BQ8NCS4 154 aa19.52■□□□□ 0.72
SHH-204ENST00000441114 RNF214Q8ND24 703 aa19.52■□□□□ 0.72
SHH-204ENST00000441114 EPS8L1Q8TE68 723 aa19.52■□□□□ 0.72
SHH-204ENST00000441114 DDX1Q92499 740 aaKnown RBP19.52■□□□□ 0.72
SHH-204ENST00000441114 MSANTD3Q96H12 275 aa19.52■□□□□ 0.72
SHH-204ENST00000441114 LMAN1LQ9HAT1 526 aa19.52■□□□□ 0.72
SHH-204ENST00000441114 NCAM2O15394 837 aa19.51■□□□□ 0.71
SHH-204ENST00000441114 CYP17A1P05093 508 aa19.51■□□□□ 0.71
SHH-204ENST00000441114 NCAM1P13591 858 aa19.51■□□□□ 0.71
SHH-204ENST00000441114 AMPD2Q01433 879 aa19.51■□□□□ 0.71
SHH-204ENST00000441114 DHCR24Q15392 516 aa19.51■□□□□ 0.71
SHH-204ENST00000441114 NAIF1Q69YI7 327 aaPredicted RBP19.51■□□□□ 0.71
SHH-204ENST00000441114 HTR3DQ70Z44 454 aa19.51■□□□□ 0.71
SHH-204ENST00000441114 KIAA1958Q8N8K9 716 aa19.51■□□□□ 0.71
SHH-204ENST00000441114 IPO4Q8TEX9 1081 aaKnown RBP19.51■□□□□ 0.71
SHH-204ENST00000441114 CHFRQ96EP1 664 aa19.51■□□□□ 0.71
SHH-204ENST00000441114 OSBPL6Q9BZF3 934 aa19.51■□□□□ 0.71
SHH-204ENST00000441114 IFNKQ9P0W0 207 aa19.51■□□□□ 0.71
SHH-204ENST00000441114 NOCTQ9UK39 431 aaKnown RBP19.51■□□□□ 0.71
SHH-204ENST00000441114 NAALADL1Q9UQQ1 740 aa19.51■□□□□ 0.71
SHH-204ENST00000441114 A0A1W2PQC6 194 aa19.5■□□□□ 0.71
SHH-204ENST00000441114 CAPN9O14815 690 aa19.5■□□□□ 0.71
SHH-204ENST00000441114 SART1O43290 800 aaKnown RBP19.5■□□□□ 0.71
SHH-204ENST00000441114 MSI1O43347 362 aaKnown RBP19.5■□□□□ 0.71
SHH-204ENST00000441114 GREM1O60565 184 aa19.5■□□□□ 0.71
SHH-204ENST00000441114 ERBB2P04626 1255 aa19.5■□□□□ 0.71
SHH-204ENST00000441114 GALK1P51570 392 aa19.5■□□□□ 0.71
SHH-204ENST00000441114 CDR2Q01850 454 aa19.5■□□□□ 0.71
SHH-204ENST00000441114 PTPN20Q4JDL3 420 aa19.5■□□□□ 0.71
SHH-204ENST00000441114 LY6G5CQ5SRR4 150 aa19.5■□□□□ 0.71
SHH-204ENST00000441114 C1orf228Q6PIY5 440 aa19.5■□□□□ 0.71
SHH-204ENST00000441114 RHBDF2Q6PJF5 856 aa19.5■□□□□ 0.71
SHH-204ENST00000441114 FAM183BPQ6ZVS7 135 aa19.5■□□□□ 0.71
SHH-204ENST00000441114 DTWD2Q8NBA8 298 aa19.5■□□□□ 0.71
SHH-204ENST00000441114 CPA5Q8WXQ8 436 aa19.5■□□□□ 0.71
SHH-204ENST00000441114 OTUB2Q96DC9 234 aa19.5■□□□□ 0.71
SHH-204ENST00000441114 PIWIL1Q96J94 861 aaKnown RBP19.5■□□□□ 0.71
SHH-204ENST00000441114 RBM12Q9NTZ6 932 aaKnown RBP19.5■□□□□ 0.71
SHH-204ENST00000441114 GRAP2O75791 330 aa19.49■□□□□ 0.71
SHH-204ENST00000441114 KLKB1P03952 638 aa19.49■□□□□ 0.71
SHH-204ENST00000441114 FYNP06241 537 aa19.49■□□□□ 0.71
SHH-204ENST00000441114 CHRNB2P17787 502 aa19.49■□□□□ 0.71
SHH-204ENST00000441114 CORO1AP31146 461 aaKnown RBP19.49■□□□□ 0.71
SHH-204ENST00000441114 SNX16P57768 344 aa19.49■□□□□ 0.71
SHH-204ENST00000441114 TAF5Q15542 800 aa19.49■□□□□ 0.71
SHH-204ENST00000441114 ANO4Q32M45 955 aa19.49■□□□□ 0.71
SHH-204ENST00000441114 NAA35Q5VZE5 725 aa19.49■□□□□ 0.71
SHH-204ENST00000441114 TPGS1Q6ZTW0 290 aa19.49■□□□□ 0.71
SHH-204ENST00000441114 ERICH1Q86X53 443 aa19.49■□□□□ 0.71
SHH-204ENST00000441114 ZNF677Q86XU0 584 aa19.49■□□□□ 0.71
SHH-204ENST00000441114 TMEM25Q86YD3 366 aa19.49■□□□□ 0.71
SHH-204ENST00000441114 DENND1CQ8IV53 801 aa19.49■□□□□ 0.71
SHH-204ENST00000441114 P2RY13Q9BPV8 354 aa19.49■□□□□ 0.71
SHH-204ENST00000441114 SPHK2Q9NRA0 654 aa19.49■□□□□ 0.71
SHH-204ENST00000441114 SEPT11Q9NVA2 429 aaKnown RBP19.49■□□□□ 0.71
SHH-204ENST00000441114 DLGAP2Q9P1A6 1054 aa19.49■□□□□ 0.71
SHH-204ENST00000441114 ZNF318Q5VUA4 2279 aa19.49■□□□□ 0.71
SHH-204ENST00000441114 ADH1CP00326 375 aa19.48■□□□□ 0.71
SHH-204ENST00000441114 CHRNB1P11230 501 aa19.48■□□□□ 0.71
SHH-204ENST00000441114 ADH5P11766 374 aa19.48■□□□□ 0.71
SHH-204ENST00000441114 CDH5P33151 784 aaPredicted RBP19.48■□□□□ 0.71
SHH-204ENST00000441114 YWHAZP63104 245 aaKnown RBP19.48■□□□□ 0.71
SHH-204ENST00000441114 FMO1Q01740 532 aa19.48■□□□□ 0.71
SHH-204ENST00000441114 FZD5Q13467 585 aa19.48■□□□□ 0.71
SHH-204ENST00000441114 C2CD6Q53TS8 623 aa19.48■□□□□ 0.71
SHH-204ENST00000441114 SYPL2Q5VXT5 272 aa19.48■□□□□ 0.71
SHH-204ENST00000441114 MSANTD2Q6P1R3 559 aa19.48■□□□□ 0.71
SHH-204ENST00000441114 ZNF687Q8N1G0 1237 aa19.48■□□□□ 0.71
SHH-204ENST00000441114 NAT16Q8N8M0 369 aa19.48■□□□□ 0.71
SHH-204ENST00000441114 ADAM32Q8TC27 787 aa19.48■□□□□ 0.71
SHH-204ENST00000441114 CD101Q93033 1021 aa19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms