RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 HDCP19113 662 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 RDXP35241 583 aaKnown RBP10.54□□□□□ -0.72
CD44-207ENST00000425428 PTPN9P43378 593 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 ATP11AP98196 1134 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 EFEMP1Q12805 493 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 NME3Q13232 169 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 ADGRE1Q14246 886 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 CCDC85BQ15834 202 aaPredicted RBP10.54□□□□□ -0.72
CD44-207ENST00000425428 GPR158Q5T848 1215 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 ACBD5Q5T8D3 534 aaPredicted RBP10.54□□□□□ -0.72
CD44-207ENST00000425428 SCYL2Q6P3W7 929 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 KLHDC10Q6PID8 442 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 STRADAQ7RTN6 431 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 PEX26Q7Z412 305 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 UNC45BQ8IWX7 931 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 C12orf76Q8N812 135 aaPredicted RBP10.54□□□□□ -0.72
CD44-207ENST00000425428 NDRG1Q92597 394 aaKnown RBP10.54□□□□□ -0.72
CD44-207ENST00000425428 SLC2A13Q96QE2 648 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 LACRTQ9GZZ8 138 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 OSGEPQ9NPF4 335 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.54□□□□□ -0.72
CD44-207ENST00000425428 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.54□□□□□ -0.72
CD44-207ENST00000425428 MARCH2Q9P0N8 246 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 COX16Q9P0S2 106 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 DNMT3BQ9UBC3 853 aaKnown RBP10.54□□□□□ -0.72
CD44-207ENST00000425428 CD207Q9UJ71 328 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 TMEM59LQ9UK28 342 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 NAALADL1Q9UQQ1 740 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 REXO2Q9Y3B8 237 aaKnown RBP10.54□□□□□ -0.72
CD44-207ENST00000425428 ANAPC1Q9H1A4 1944 aa10.53□□□□□ -0.72
CD44-207ENST00000425428 C2CD4BA6NLJ0 364 aa10.53□□□□□ -0.72
CD44-207ENST00000425428 PROSCO94903 275 aa10.53□□□□□ -0.72
CD44-207ENST00000425428 MOCS3O95396 460 aa10.53□□□□□ -0.72
CD44-207ENST00000425428 TRUB2O95900 331 aaKnown RBP10.53□□□□□ -0.72
CD44-207ENST00000425428 F11P03951 625 aa10.53□□□□□ -0.72
CD44-207ENST00000425428 KRT7P08729 469 aa10.53□□□□□ -0.72
CD44-207ENST00000425428 CCR1P32246 355 aa10.53□□□□□ -0.72
CD44-207ENST00000425428 MAN1A1P33908 653 aa10.53□□□□□ -0.72
CD44-207ENST00000425428 HARS2P49590 506 aaKnown RBP10.53□□□□□ -0.72
CD44-207ENST00000425428 EPHA5P54756 1037 aa10.53□□□□□ -0.72
CD44-207ENST00000425428 AIF1P55008 147 aa10.53□□□□□ -0.72
CD44-207ENST00000425428 RPL7AP62424 266 aaKnown RBP10.53□□□□□ -0.72
CD44-207ENST00000425428 KCNC3Q14003 757 aa10.53□□□□□ -0.72
CD44-207ENST00000425428 NUGGCQ68CJ6 796 aa10.53□□□□□ -0.72
CD44-207ENST00000425428 C11orf63Q6NUN7 778 aa10.53□□□□□ -0.72
CD44-207ENST00000425428 Q7L0L9 218 aa10.53□□□□□ -0.72
CD44-207ENST00000425428 HS6ST3Q8IZP7 471 aa10.53□□□□□ -0.72
CD44-207ENST00000425428 EMC1Q8N766 993 aa10.53□□□□□ -0.72
CD44-207ENST00000425428 MAB21L3Q8N8X9 362 aa10.53□□□□□ -0.72
CD44-207ENST00000425428 OLIG1Q8TAK6 271 aa10.53□□□□□ -0.72
CD44-207ENST00000425428 FAM172AQ8WUF8 416 aa10.53□□□□□ -0.72
CD44-207ENST00000425428 HLA-CQ95604 372 aa10.53□□□□□ -0.72
CD44-207ENST00000425428 ACSF2Q96CM8 615 aaPredicted RBP10.53□□□□□ -0.72
CD44-207ENST00000425428 CFAP57Q96MR6 1250 aa10.53□□□□□ -0.72
CD44-207ENST00000425428 DDX50Q9BQ39 737 aaKnown RBP10.53□□□□□ -0.72
CD44-207ENST00000425428 APOL5Q9BWW9 433 aa10.53□□□□□ -0.72
CD44-207ENST00000425428 DCLK3Q9C098 648 aa10.53□□□□□ -0.72
CD44-207ENST00000425428 SMOC2Q9H3U7 446 aa10.53□□□□□ -0.72
CD44-207ENST00000425428 TASP1Q9H6P5 420 aa10.53□□□□□ -0.72
CD44-207ENST00000425428 WDCPQ9H6R7 721 aa10.53□□□□□ -0.72
CD44-207ENST00000425428 KCND1Q9NSA2 647 aa10.53□□□□□ -0.72
CD44-207ENST00000425428 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.53□□□□□ -0.72
CD44-207ENST00000425428 COG5Q9UP83 839 aa10.53□□□□□ -0.72
CD44-207ENST00000425428 HBS1LQ9Y450 684 aaKnown RBP10.53□□□□□ -0.72
CD44-207ENST00000425428 ZFP37Q9Y6Q3 630 aaPredicted RBP10.53□□□□□ -0.72
CD44-207ENST00000425428 MIF4GDA9UHW6 222 aaKnown RBP10.52□□□□□ -0.72
CD44-207ENST00000425428 LINC01565O15544 149 aa10.52□□□□□ -0.72
CD44-207ENST00000425428 ZDHHC11BP0C7U3 371 aa10.52□□□□□ -0.72
CD44-207ENST00000425428 FLT3P36888 993 aa10.52□□□□□ -0.72
CD44-207ENST00000425428 TBX4P57082 545 aa10.52□□□□□ -0.72
CD44-207ENST00000425428 GNG11P61952 73 aa10.52□□□□□ -0.72
CD44-207ENST00000425428 NNTQ13423 1086 aa10.52□□□□□ -0.72
CD44-207ENST00000425428 TAF5Q15542 800 aa10.52□□□□□ -0.72
CD44-207ENST00000425428 PUS10Q3MIT2 529 aaKnown RBP10.52□□□□□ -0.72
CD44-207ENST00000425428 ZNF569Q5MCW4 686 aa10.52□□□□□ -0.72
CD44-207ENST00000425428 PPP1R15BQ5SWA1 713 aa10.52□□□□□ -0.72
CD44-207ENST00000425428 MSANTD2Q6P1R3 559 aa10.52□□□□□ -0.72
CD44-207ENST00000425428 MIB1Q86YT6 1006 aa10.52□□□□□ -0.72
CD44-207ENST00000425428 ATP6V0D2Q8N8Y2 350 aa10.52□□□□□ -0.72
CD44-207ENST00000425428 TPCN2Q8NHX9 752 aa10.52□□□□□ -0.72
CD44-207ENST00000425428 JOSD2Q8TAC2 188 aa10.52□□□□□ -0.72
CD44-207ENST00000425428 E2F7Q96AV8 911 aa10.52□□□□□ -0.72
CD44-207ENST00000425428 PLD4Q96BZ4 506 aa10.52□□□□□ -0.72
CD44-207ENST00000425428 ZNF334Q9HCZ1 680 aaPredicted RBP10.52□□□□□ -0.72
CD44-207ENST00000425428 WDR6Q9NNW5 1121 aaKnown RBP10.52□□□□□ -0.72
CD44-207ENST00000425428 HCFC1R1Q9NWW0 138 aa10.52□□□□□ -0.72
CD44-207ENST00000425428 TLR6Q9Y2C9 796 aa10.52□□□□□ -0.72
CD44-207ENST00000425428 ZNF510Q9Y2H8 683 aa10.52□□□□□ -0.72
CD44-207ENST00000425428 SH3BP1Q9Y3L3 701 aa10.52□□□□□ -0.72
CD44-207ENST00000425428 C2orf16Q68DN1 1984 aa10.52□□□□□ -0.73
CD44-207ENST00000425428 OBSL1O75147 1896 aa10.52□□□□□ -0.73
CD44-207ENST00000425428 SLC12A8A0AV02 714 aa10.52□□□□□ -0.73
CD44-207ENST00000425428 TYW5A2RUC4 315 aaKnown RBP10.52□□□□□ -0.73
CD44-207ENST00000425428 PALMO75781 387 aa10.52□□□□□ -0.73
CD44-207ENST00000425428 GABBR2O75899 941 aa10.52□□□□□ -0.73
CD44-207ENST00000425428 GLP2RO95838 553 aa10.52□□□□□ -0.73
CD44-207ENST00000425428 GBP2P32456 591 aaPredicted RBP10.52□□□□□ -0.73
CD44-207ENST00000425428 PCK1P35558 622 aa10.52□□□□□ -0.73
CD44-207ENST00000425428 SLC11A2P49281 568 aa10.52□□□□□ -0.73
CD44-207ENST00000425428 CYP4F8P98187 520 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms