RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 UBE2TQ9NPD8 197 aaPredicted RBP10.15□□□□□ -0.78
USP54-205ENST00000424265 CNOT8Q9UFF9 292 aaKnown RBP10.15□□□□□ -0.78
USP54-205ENST00000424265 COBLO75128 1261 aa10.15□□□□□ -0.78
USP54-205ENST00000424265 TRMUO75648 421 aaKnown RBP10.15□□□□□ -0.78
USP54-205ENST00000424265 CTNNA2P26232 953 aa10.15□□□□□ -0.78
USP54-205ENST00000424265 MYLK3Q32MK0 819 aa10.15□□□□□ -0.78
USP54-205ENST00000424265 TRPC4APQ8TEL6 797 aa10.15□□□□□ -0.78
USP54-205ENST00000424265 KIF12Q96FN5 646 aa10.15□□□□□ -0.78
USP54-205ENST00000424265 MED30Q96HR3 178 aa10.15□□□□□ -0.78
USP54-205ENST00000424265 PBKQ96KB5 322 aa10.15□□□□□ -0.78
USP54-205ENST00000424265 FTHL17Q9BXU8 183 aa10.15□□□□□ -0.78
USP54-205ENST00000424265 INTS2Q9H0H0 1204 aaKnown RBP10.15□□□□□ -0.78
USP54-205ENST00000424265 SETD4Q9NVD3 440 aa10.15□□□□□ -0.78
USP54-205ENST00000424265 PCSK1NQ9UHG2 260 aa10.15□□□□□ -0.78
USP54-205ENST00000424265 LTBP1Q14766 1721 aa10.15□□□□□ -0.78
USP54-205ENST00000424265 GTPBP10A4D1E9 387 aaKnown RBP10.15□□□□□ -0.78
USP54-205ENST00000424265 PSMC6P62333 389 aa10.15□□□□□ -0.78
USP54-205ENST00000424265 GTF2BQ00403 316 aa10.15□□□□□ -0.78
USP54-205ENST00000424265 IL9RQ01113 521 aa10.15□□□□□ -0.78
USP54-205ENST00000424265 ENPEPQ07075 957 aa10.15□□□□□ -0.78
USP54-205ENST00000424265 ESX1Q8N693 406 aa10.15□□□□□ -0.78
USP54-205ENST00000424265 HPS1Q92902 700 aa10.15□□□□□ -0.78
USP54-205ENST00000424265 MRPL1Q9BYD6 325 aaKnown RBP10.15□□□□□ -0.78
USP54-205ENST00000424265 KANSL3Q9P2N6 904 aa10.15□□□□□ -0.78
USP54-205ENST00000424265 EPS15L1Q9UBC2 864 aa10.15□□□□□ -0.78
USP54-205ENST00000424265 SCN9AQ15858 1988 aa10.15□□□□□ -0.79
USP54-205ENST00000424265 AOC2O75106 756 aa10.15□□□□□ -0.79
USP54-205ENST00000424265 AGTP01019 485 aa10.15□□□□□ -0.79
USP54-205ENST00000424265 GLI1P08151 1106 aa10.15□□□□□ -0.79
USP54-205ENST00000424265 PRKCZQ05513 592 aa10.15□□□□□ -0.79
USP54-205ENST00000424265 THOC5Q13769 683 aaKnown RBP10.15□□□□□ -0.79
USP54-205ENST00000424265 NFIL3Q16649 462 aa10.15□□□□□ -0.79
USP54-205ENST00000424265 RGS21Q2M5E4 152 aa10.15□□□□□ -0.79
USP54-205ENST00000424265 FAM209AQ5JX71 171 aa10.15□□□□□ -0.79
USP54-205ENST00000424265 CST9Q5W186 159 aa10.15□□□□□ -0.79
USP54-205ENST00000424265 DCUN1D2Q6PH85 259 aa10.15□□□□□ -0.79
USP54-205ENST00000424265 ARHGEF18Q6ZSZ5 1173 aa10.15□□□□□ -0.79
USP54-205ENST00000424265 PEX26Q7Z412 305 aa10.15□□□□□ -0.79
USP54-205ENST00000424265 CCDC117Q8IWD4 279 aaPredicted RBP10.15□□□□□ -0.79
USP54-205ENST00000424265 ANKRD49Q8WVL7 239 aa10.15□□□□□ -0.79
USP54-205ENST00000424265 PHF12Q96QT6 1004 aa10.15□□□□□ -0.79
USP54-205ENST00000424265 KMOO15229 486 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 EFCAB14O75071 495 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 PABPC4LP0CB38 370 aaKnown RBP10.14□□□□□ -0.79
USP54-205ENST00000424265 UBL4AP11441 157 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 OSTNP61366 133 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 MDM2Q00987 491 aaPredicted RBP10.14□□□□□ -0.79
USP54-205ENST00000424265 IL17AQ16552 155 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 SMU1Q2TAY7 513 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 SV2CQ496J9 727 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 PPP6R3Q5H9R7 873 aaPredicted RBP10.14□□□□□ -0.79
USP54-205ENST00000424265 KIAA1841Q6NSI8 718 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 CTU1Q7Z7A3 348 aaKnown RBP10.14□□□□□ -0.79
USP54-205ENST00000424265 ZNF784Q8NCA9 323 aaPredicted RBP10.14□□□□□ -0.79
USP54-205ENST00000424265 ECSITQ9BQ95 431 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 ASB7Q9H672 318 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 NHEJ1Q9H9Q4 299 aaPredicted RBP10.14□□□□□ -0.79
USP54-205ENST00000424265 INTS13Q9NVM9 706 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 UMODL1Q5DID0 1318 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 DDX60LQ5H9U9 1706 aaKnown RBP10.14□□□□□ -0.79
USP54-205ENST00000424265 KPNA4O00629 521 aaPredicted RBP10.14□□□□□ -0.79
USP54-205ENST00000424265 CCDC22O60826 627 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 GAS8O95995 478 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 CCNE2O96020 404 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 GYPCP04921 128 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 GJA5P36382 358 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 SLCO1A2P46721 670 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 FMO5P49326 533 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 SLC9A9Q8IVB4 645 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 GALNT4Q8N4A0 578 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 SCFD1Q8WVM8 642 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 ATP2A3Q93084 1043 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 TRIM63Q969Q1 353 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 LENG9Q96B70 501 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 TRIM62Q9BVG3 475 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 TARS2Q9BW92 718 aaKnown RBP10.14□□□□□ -0.79
USP54-205ENST00000424265 ISCUQ9H1K1 167 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 LRMDAQ9H2I8 198 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 CHST12Q9NRB3 414 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 AAASQ9NRG9 546 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 IP6K2Q9UHH9 426 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 SH3PXD2BA1X283 911 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 GRID2IPA4D2P6 1211 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 BUB1O43683 1085 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 GRAMD1BQ3KR37 738 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 TTI2Q6NXR4 508 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 SLC27A1Q6PCB7 646 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 TTC23LQ6PF05 361 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 C12orf56Q8IXR9 622 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 EFHD2Q96C19 240 aaPredicted RBP10.14□□□□□ -0.79
USP54-205ENST00000424265 TNIP3Q96KP6 325 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 GRIP2Q9C0E4 1043 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 EMC3Q9P0I2 261 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 DNAJC12Q9UKB3 198 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 MAD1L1Q9Y6D9 718 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 A0A1W2PQJ5 194 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 E9PBE3 544 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 CNMDO75829 334 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 KRT36O76013 467 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 ZWINTO95229 277 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms