RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 ZIM3Q96PE6 472 aa12.35□□□□□ -0.43
PTPRF-205ENST00000414879 CYLDQ9NQC7 956 aa12.35□□□□□ -0.43
PTPRF-205ENST00000414879 RAD18Q9NS91 495 aa12.35□□□□□ -0.43
PTPRF-205ENST00000414879 TRMT6Q9UJA5 497 aaKnown RBP12.35□□□□□ -0.43
PTPRF-205ENST00000414879 COL1A1P02452 1464 aaPredicted RBP12.35□□□□□ -0.43
PTPRF-205ENST00000414879 SYCE1LA8MT33 242 aa12.35□□□□□ -0.43
PTPRF-205ENST00000414879 SUPT3HO75486 399 aa12.35□□□□□ -0.43
PTPRF-205ENST00000414879 CHN1P15882 459 aa12.35□□□□□ -0.43
PTPRF-205ENST00000414879 HSD17B3P37058 310 aa12.35□□□□□ -0.43
PTPRF-205ENST00000414879 AP2B1P63010 937 aa12.35□□□□□ -0.43
PTPRF-205ENST00000414879 LONRF1Q17RB8 773 aa12.35□□□□□ -0.43
PTPRF-205ENST00000414879 CXCL17Q6UXB2 119 aa12.35□□□□□ -0.43
PTPRF-205ENST00000414879 AGGF1Q8N302 714 aaeCLIP12.35□□□□□ -0.43
PTPRF-205ENST00000414879 CDC26Q8NHZ8 85 aa12.35□□□□□ -0.43
PTPRF-205ENST00000414879 SLC2A14Q8TDB8 520 aa12.35□□□□□ -0.43
PTPRF-205ENST00000414879 ZBTB45Q96K62 511 aaPredicted RBP12.35□□□□□ -0.43
PTPRF-205ENST00000414879 GAD1Q99259 594 aa12.35□□□□□ -0.43
PTPRF-205ENST00000414879 LHX5Q9H2C1 402 aa12.35□□□□□ -0.43
PTPRF-205ENST00000414879 OSGEPQ9NPF4 335 aa12.35□□□□□ -0.43
PTPRF-205ENST00000414879 C2CD2LO14523 706 aa12.35□□□□□ -0.43
PTPRF-205ENST00000414879 PRKAR2AP13861 404 aaKnown RBP12.35□□□□□ -0.43
PTPRF-205ENST00000414879 VCLP18206 1134 aa12.35□□□□□ -0.43
PTPRF-205ENST00000414879 MAGEA9P43362 315 aa12.35□□□□□ -0.43
PTPRF-205ENST00000414879 PCSK7Q16549 785 aa12.35□□□□□ -0.43
PTPRF-205ENST00000414879 MIIPQ5JXC2 388 aa12.35□□□□□ -0.43
PTPRF-205ENST00000414879 DDIASQ8IXT1 998 aa12.35□□□□□ -0.43
PTPRF-205ENST00000414879 CASKIN2Q8WXE0 1202 aa12.35□□□□□ -0.43
PTPRF-205ENST00000414879 CPSF2Q9P2I0 782 aaKnown RBP12.35□□□□□ -0.43
PTPRF-205ENST00000414879 HEATR9A2RTY3 570 aa12.35□□□□□ -0.43
PTPRF-205ENST00000414879 PPP1R11O60927 126 aaPredicted RBP12.35□□□□□ -0.43
PTPRF-205ENST00000414879 RHOBTB1O94844 696 aa12.35□□□□□ -0.43
PTPRF-205ENST00000414879 CSH1P0DML2 217 aa12.35□□□□□ -0.43
PTPRF-205ENST00000414879 CSH2P0DML3 217 aa12.35□□□□□ -0.43
PTPRF-205ENST00000414879 DARSP14868 501 aaKnown RBP12.35□□□□□ -0.43
PTPRF-205ENST00000414879 TAL1P17542 331 aaPredicted RBP12.35□□□□□ -0.43
PTPRF-205ENST00000414879 ZNF143P52747 638 aaPredicted RBP12.35□□□□□ -0.43
PTPRF-205ENST00000414879 SESN3P58005 492 aa12.35□□□□□ -0.43
PTPRF-205ENST00000414879 MGAT5Q09328 741 aa12.35□□□□□ -0.43
PTPRF-205ENST00000414879 EIF2B5Q13144 721 aaKnown RBP12.35□□□□□ -0.43
PTPRF-205ENST00000414879 PTK2BQ14289 1009 aa12.35□□□□□ -0.43
PTPRF-205ENST00000414879 E2F7Q96AV8 911 aa12.35□□□□□ -0.43
PTPRF-205ENST00000414879 HTATIP2Q9BUP3 242 aa12.35□□□□□ -0.43
PTPRF-205ENST00000414879 DHX33Q9H6R0 707 aaKnown RBP12.35□□□□□ -0.43
PTPRF-205ENST00000414879 GRK2P25098 689 aa12.34□□□□□ -0.43
PTPRF-205ENST00000414879 BEX3Q00994 111 aa12.34□□□□□ -0.43
PTPRF-205ENST00000414879 LBRQ14739 615 aaKnown RBP12.34□□□□□ -0.43
PTPRF-205ENST00000414879 HIST2H2ACQ16777 129 aaPredicted RBP12.34□□□□□ -0.43
PTPRF-205ENST00000414879 PAN2Q504Q3 1202 aaKnown RBP12.34□□□□□ -0.43
PTPRF-205ENST00000414879 HIST2H2AA3Q6FI13 130 aa12.34□□□□□ -0.43
PTPRF-205ENST00000414879 KRT80Q6KB66 452 aa12.34□□□□□ -0.43
PTPRF-205ENST00000414879 KDM7AQ6ZMT4 941 aa12.34□□□□□ -0.43
PTPRF-205ENST00000414879 RNF135Q8IUD6 432 aa12.34□□□□□ -0.43
PTPRF-205ENST00000414879 SPDL1Q96EA4 605 aa12.34□□□□□ -0.43
PTPRF-205ENST00000414879 KCNK16Q96T55 309 aa12.34□□□□□ -0.43
PTPRF-205ENST00000414879 ARHGAP28Q9P2N2 729 aa12.34□□□□□ -0.43
PTPRF-205ENST00000414879 VPS28Q9UK41 221 aa12.34□□□□□ -0.43
PTPRF-205ENST00000414879 TCP11X1B4DZS4 312 aa12.34□□□□□ -0.43
PTPRF-205ENST00000414879 DNALI1O14645 258 aaPredicted RBP12.34□□□□□ -0.43
PTPRF-205ENST00000414879 ANGPT2O15123 496 aa12.34□□□□□ -0.43
PTPRF-205ENST00000414879 TM9SF1O15321 606 aa12.34□□□□□ -0.43
PTPRF-205ENST00000414879 CLASP2O75122 1294 aaKnown RBP12.34□□□□□ -0.43
PTPRF-205ENST00000414879 ATN1P54259 1190 aaPredicted RBP12.34□□□□□ -0.43
PTPRF-205ENST00000414879 RHOAP61586 193 aa12.34□□□□□ -0.43
PTPRF-205ENST00000414879 ZNF284Q2VY69 593 aa12.34□□□□□ -0.43
PTPRF-205ENST00000414879 SCARA3Q6AZY7 606 aa12.34□□□□□ -0.43
PTPRF-205ENST00000414879 DSG4Q86SJ6 1040 aa12.34□□□□□ -0.43
PTPRF-205ENST00000414879 DDI1Q8WTU0 396 aa12.34□□□□□ -0.43
PTPRF-205ENST00000414879 PHACTR1Q9C0D0 580 aa12.34□□□□□ -0.43
PTPRF-205ENST00000414879 CLUHO75153 1309 aa12.34□□□□□ -0.43
PTPRF-205ENST00000414879 TMEM120BA0PK00 339 aa12.34□□□□□ -0.43
PTPRF-205ENST00000414879 MOXD2PA6NHM9 499 aa12.34□□□□□ -0.43
PTPRF-205ENST00000414879 DNAJC8O75937 253 aaPredicted RBP12.34□□□□□ -0.43
PTPRF-205ENST00000414879 ADRB2P07550 413 aa12.34□□□□□ -0.43
PTPRF-205ENST00000414879 CES1P23141 567 aa12.34□□□□□ -0.43
PTPRF-205ENST00000414879 HTR7P34969 479 aa12.34□□□□□ -0.43
PTPRF-205ENST00000414879 NAA20P61599 178 aa12.34□□□□□ -0.43
PTPRF-205ENST00000414879 ZRANB3Q5FWF4 1079 aa12.34□□□□□ -0.43
PTPRF-205ENST00000414879 SLC25A41Q8N5S1 370 aa12.34□□□□□ -0.43
PTPRF-205ENST00000414879 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.34□□□□□ -0.43
PTPRF-205ENST00000414879 CLEC4DQ8WXI8 215 aa12.34□□□□□ -0.43
PTPRF-205ENST00000414879 PRPF18Q99633 342 aaKnown RBP12.34□□□□□ -0.43
PTPRF-205ENST00000414879 MRPL17Q9NRX2 175 aaKnown RBP12.34□□□□□ -0.43
PTPRF-205ENST00000414879 DCTN4Q9UJW0 460 aa12.34□□□□□ -0.43
PTPRF-205ENST00000414879 G3BP2Q9UN86 482 aaKnown RBP12.34□□□□□ -0.43
PTPRF-205ENST00000414879 IGLV3-22A0A075B6J6 115 aa12.34□□□□□ -0.43
PTPRF-205ENST00000414879 TRDMT1O14717 391 aaKnown RBP12.34□□□□□ -0.43
PTPRF-205ENST00000414879 PMPCBO75439 489 aa12.34□□□□□ -0.43
PTPRF-205ENST00000414879 ARL2P36404 184 aa12.34□□□□□ -0.43
PTPRF-205ENST00000414879 PPP1R15BQ5SWA1 713 aa12.34□□□□□ -0.43
PTPRF-205ENST00000414879 C16orf89Q6UX73 402 aa12.34□□□□□ -0.43
PTPRF-205ENST00000414879 DEFB106AQ8N104 65 aa12.34□□□□□ -0.43
PTPRF-205ENST00000414879 VPS37AQ8NEZ2 397 aa12.34□□□□□ -0.43
PTPRF-205ENST00000414879 TNIP2Q8NFZ5 429 aa12.34□□□□□ -0.43
PTPRF-205ENST00000414879 HTR3CQ8WXA8 447 aa12.34□□□□□ -0.43
PTPRF-205ENST00000414879 SUDS3Q9H7L9 328 aaPredicted RBP12.34□□□□□ -0.43
PTPRF-205ENST00000414879 PCMTD2Q9NV79 361 aa12.34□□□□□ -0.43
PTPRF-205ENST00000414879 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.34□□□□□ -0.43
PTPRF-205ENST00000414879 F5H423 210 aaPredicted RBP12.33□□□□□ -0.44
PTPRF-205ENST00000414879 NFKBIEO00221 500 aa12.33□□□□□ -0.44
PTPRF-205ENST00000414879 ZBTB39O15060 712 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms