RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 SAE1Q9UBE0 346 aaPredicted RBP13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 TMCO1Q9UM00 188 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 MYL9P24844 172 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 SLC26A3P40879 764 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 PTGER2P43116 358 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 OTUD3Q5T2D3 398 aaPredicted RBP13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 ZNF341Q9BYN7 854 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 BTG4Q9NY30 223 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 MAP10Q9P2G4 905 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 ITGA9Q13797 1035 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 MYO1HQ8N1T3 1032 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 ZNF615Q8N8J6 731 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 MYDGFQ969H8 173 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 DGCR6LQ9BY27 220 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 ATF6P18850 670 aa13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 EZH2Q15910 746 aaKnown RBP13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 NEUROD4Q9HD90 331 aa13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 CKLFQ9UBR5 152 aa13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 BCS1LQ9Y276 419 aa13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 INO80DQ53TQ3 878 aaPredicted RBP13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 RNF44Q7L0R7 432 aa13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 DSG4Q86SJ6 1040 aa13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 TRPV1Q8NER1 839 aa13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 SUN5Q8TC36 379 aa13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 OSBPL5Q9H0X9 879 aaPredicted RBP13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 STOX2Q9P2F5 926 aaPredicted RBP13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 A0A1W2PQ72 361 aa13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 MPOP05164 745 aa13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 CENPCQ03188 943 aa13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 CDH18Q13634 790 aa13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 IP6K1Q92551 441 aa13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 RXFP1Q9HBX9 757 aa13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 L1RE1Q9UN81 338 aa13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 TRIM17Q9Y577 477 aa13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 GLRA3O75311 464 aa13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 SUPT7LO94864 414 aa13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 SEC24AO95486 1093 aa13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 GRB14Q14449 540 aa13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 USP17L2Q6R6M4 530 aa13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 KBTBD8Q8NFY9 601 aa13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 SEPHS2Q99611 448 aa13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 TRIM10Q9UDY6 481 aa13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 AGO2Q9UKV8 859 aaKnown RBP13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 MROH7Q68CQ1 1323 aa13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 A0A0G2JPF8 293 aa13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 HNRNPCL3B7ZW38 293 aa13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 HNRNPCL4P0DMR1 293 aa13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 TTC27Q6P3X3 843 aa13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 LRRC69Q6ZNQ3 347 aa13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 ZDHHC13Q8IUH4 622 aa13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 AKAP1Q92667 903 aaKnown RBP eCLIP13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 FAM111AQ96PZ2 611 aa13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 WDR12Q9GZL7 423 aaKnown RBP13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 CLN6Q9NWW5 311 aa13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 MYO9BQ13459 2157 aa13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 MYCP01106 439 aaPredicted RBP13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 TTKP33981 857 aa13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 PACS2Q86VP3 889 aa13.69□□□□□ -0.22
CCDC88A-204ENST00000413716 ZNF185O15231 689 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 SLC16A3O15427 465 aaKnown RBP13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 STIP1P31948 543 aaKnown RBP13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 CHRNDQ07001 517 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 PRR5LQ6MZQ0 368 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 ABCB10Q9NRK6 738 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 POLR1AO95602 1720 aaPredicted RBP13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 INPP4BO15327 924 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 IRF1P10914 325 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 HOXC9P31274 260 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 HLA-DQA1Q5Y7H0 255 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 SNRNP48Q6IEG0 339 aaKnown RBP13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 CLEC4GQ6UXB4 293 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 NEK7Q8TDX7 302 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 REPS1Q96D71 796 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 ABI2Q9NYB9 513 aaPredicted RBP13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 ARHGAP28Q9P2N2 729 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 TNRQ92752 1358 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 METTL21EPA6NDL7 271 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 FARP2O94887 1054 aaPredicted RBP13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 NR3C2P08235 984 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 CNTFP26441 200 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 ALDH9A1P49189 494 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 TMEM132DQ14C87 1099 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 MIIPQ5JXC2 388 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 FLAD1Q8NFF5 587 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 SPPL2AQ8TCT8 520 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 YME1L1Q96TA2 773 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 ZBTB22O15209 634 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 ACADSBP45954 432 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 TOMM20Q15388 145 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 RNF19BQ6ZMZ0 732 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 GAS2L3Q86XJ1 694 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 CLPBQ9H078 707 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 ZNF224Q9NZL3 707 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 TMCC2O75069 709 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 LDLRP01130 860 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 MYL4P12829 197 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 ITIH1P19827 911 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 PSMA8Q8TAA3 256 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 MAGEB10Q96LZ2 347 aaPredicted RBP13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 TMEM237Q96Q45 408 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms